Forest Vegetation of Taiwan, Based on Species Composition
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Complete Chloroplast Genome of Fokienia Hodginsii (Dunn) Henry Et Thomas: Insights Into Repeat Regions Variation and Phylogenetic Relationships in Cupressophyta
Article Complete Chloroplast Genome of Fokienia hodginsii (Dunn) Henry et Thomas: Insights into Repeat Regions Variation and Phylogenetic Relationships in Cupressophyta Mingyue Zang 1 , Qian Su 1, Yuhao Weng 1, Lu Lu 1, Xueyan Zheng 2, Daiquan Ye 2, Renhua Zheng 3, Tielong Cheng 1,4, Jisen Shi 1 and Jinhui Chen 1,4,* 1 Key Laboratory of Forest Genetics & Biotechnology of Ministry of Education of China, Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing 210037, China; [email protected] (M.Z.); [email protected] (Q.S.); [email protected] (Y.W.); [email protected] (L.L.); [email protected] (T.C.); [email protected] (J.S.) 2 National Germplasm Bank of Chinese fir at Fujian Yangkou Forest Farm, Shunchang 353211, China; [email protected] (X.Z.); [email protected] (D.Y.) 3 The Key Laboratory of Timber Forest Breeding and Cultivation for Mountainous Areas in Southern China, State Forestry Administration Engineering Research Center of Chinese Fir, Fujian Academy of Forestry, Fuzhou 350012, China; [email protected] 4 College of Biology and the Environment, Nanjing Forestry University, Nanjing 210037, China * Correspondence: [email protected]; Tel./Fax: +86-25-85428948 Received: 24 May 2019; Accepted: 21 June 2019; Published: 26 June 2019 Abstract: Fokienia hodginsii (Dunn) Henry et Thomas is a relic gymnosperm with broad application value. It is a fit candidate when choosing species for the construction of artificial forests. We determined the complete chloroplast genome sequence of F. hodginsii, which is 129,534 bp in length and encodes 83 protein genes, 33 transfer RNA (tRNA) genes, as well as four ribosomal RNA genes. -
A Massively Parallel Pyrosequencing Analysi
How are plant and fungal communities linked to each other in belowground ecosystems? A massively parallel pyrosequencing analysis of the association specificity of root-associated fungi and their host plants Hirokazu Toju1,2, Hirotoshi Sato1,2, Satoshi Yamamoto1,2, Kohmei Kadowaki1,2, Akifumi S. Tanabe1, Shigenobu Yazawa3, Osamu Nishimura3 & Kiyokazu Agata3 1Graduate School of Global Environmental Studies, Kyoto University, Kyoto 606-8501, Japan 2Graduate School of Human and Environmental Studies, Kyoto University, Kyoto 606-8501, Japan 3Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan Keywords Abstract Common mycorrhizal network, endophytes, metagenomics, mycorrhizae, network theory, In natural forests, hundreds of fungal species colonize plant roots. The preference plant communities. or specificity for partners in these symbiotic relationships is a key to understand- ing how the community structures of root-associated fungi and their host plants Correspondence influence each other. In an oak-dominated forest in Japan, we investigated the Hirokazu Toju, Graduate School of Human root-associated fungal community based on a pyrosequencing analysis of the and Environmental Studies, Kyoto University, roots of 33 plant species. Of the 387 fungal taxa observed, 153 (39.5%) were iden- Sakyo, Kyoto 606-8501, Japan. tified on at least two plant species. Although many mycorrhizal and root-endo- Tel: +81-75-753-6766; Fax: +81-75-753- 6722; E-mail: [email protected] phytic fungi are shared between the plant species, the five most common plant species in the community had specificity in their association with fungal taxa. Funding Information Likewise, fungi displayed remarkable variation in their association specificity for This work was supported by the Funding plants even within the same phylogenetic or ecological groups. -
This Thesis Has Been Submitted in Fulfilment of the Requirements for a Postgraduate Degree (E.G
This thesis has been submitted in fulfilment of the requirements for a postgraduate degree (e.g. PhD, MPhil, DClinPsychol) at the University of Edinburgh. Please note the following terms and conditions of use: This work is protected by copyright and other intellectual property rights, which are retained by the thesis author, unless otherwise stated. A copy can be downloaded for personal non-commercial research or study, without prior permission or charge. This thesis cannot be reproduced or quoted extensively from without first obtaining permission in writing from the author. The content must not be changed in any way or sold commercially in any format or medium without the formal permission of the author. When referring to this work, full bibliographic details including the author, title, awarding institution and date of the thesis must be given. Trichome morphology and development in the genus Antirrhinum Ying Tan Doctor of Philosophy Institute of Molecular Plant Sciences School of Biological Sciences The University of Edinburgh 2018 Declaration I declare that this thesis has been composed solely by myself and that it has not been submitted, in whole or in part, in any previous application for a degree. Except where stated otherwise by reference or acknowledgment, the work presented is entirely my own. ___________________ ___________________ Ying Tan Date I Acknowledgments Many people helped and supported me during my study. First, I would like to express my deepest gratitude to my supervisor, Professor Andrew Hudson. He has supported me since my PhD application and always provides his valuable direction and advice. Other members of Prof. Hudson’s research group, especially Erica de Leau and Matthew Barnbrook, taught me lots of experiment skills. -
Chinese Herbal Medicine for Chronic Urticaria and Psoriasis Vulgaris: Clinical Evidence and Patient Experience
Chinese Herbal Medicine for Chronic Urticaria and Psoriasis Vulgaris: Clinical Evidence and Patient Experience A thesis submitted in fulfilment of the requirement for the degree of Doctor of Philosophy Jingjie Yu BMed, MMed School of Health & Biomedical Sciences College of Science, Engineering and Health RMIT University August 2017 Declaration I certify that except where due acknowledgement has been made, the work is that of the author alone; the work has not been submitted previously, in whole or in part, to qualify for any other academic award; the content of the thesis is the result of work which has been carried out since the official commencement date of the approved research program; and, any editorial work, paid or unpaid, carried out by a third party is acknowledged. Jingjie Yu __________________ Date 21 August 2017 i Acknowledgements First, I would like to express my deepest gratitude to my parents, Mr Mingzhong Yu and Mrs Fengqiong Lv, for your endless love, encouragement and support throughout these years. I would also like to express my sincere appreciation to my supervisors, Professor Charlie Changli Xue, Professor Chuanjian Lu, Associate Professor Anthony Lin Zhang and Dr Meaghan Coyle. To my joint senior supervisor, Professor Charlie Changli Xue, thank you for providing me the opportunity to undertake a PhD at RMIT University. To my joint senior supervisor, Professor Chuanjian Lu, thank you for teaching me the truth in life and for the guidance you have given me since I stepped into your consultation room in our hospital seven years ago. To my joint associate supervisor Associate Professor Anthony Lin Zhang, I thank you for your continuous guidance and support during my study at RMIT University. -
Sustainable Sourcing : Markets for Certified Chinese
SUSTAINABLE SOURCING: MARKETS FOR CERTIFIED CHINESE MEDICINAL AND AROMATIC PLANTS In collaboration with SUSTAINABLE SOURCING: MARKETS FOR CERTIFIED CHINESE MEDICINAL AND AROMATIC PLANTS SUSTAINABLE SOURCING: MARKETS FOR CERTIFIED CHINESE MEDICINAL AND AROMATIC PLANTS Abstract for trade information services ID=43163 2016 SITC-292.4 SUS International Trade Centre (ITC) Sustainable Sourcing: Markets for Certified Chinese Medicinal and Aromatic Plants. Geneva: ITC, 2016. xvi, 141 pages (Technical paper) Doc. No. SC-2016-5.E This study on the market potential of sustainably wild-collected botanical ingredients originating from the People’s Republic of China with fair and organic certifications provides an overview of current export trade in both wild-collected and cultivated botanical, algal and fungal ingredients from China, market segments such as the fair trade and organic sectors, and the market trends for certified ingredients. It also investigates which international standards would be the most appropriate and applicable to the special case of China in consideration of its biodiversity conservation efforts in traditional wild collection communities and regions, and includes bibliographical references (pp. 139–140). Descriptors: Medicinal Plants, Spices, Certification, Organic Products, Fair Trade, China, Market Research English For further information on this technical paper, contact Mr. Alexander Kasterine ([email protected]) The International Trade Centre (ITC) is the joint agency of the World Trade Organization and the United Nations. ITC, Palais des Nations, 1211 Geneva 10, Switzerland (www.intracen.org) Suggested citation: International Trade Centre (2016). Sustainable Sourcing: Markets for Certified Chinese Medicinal and Aromatic Plants, International Trade Centre, Geneva, Switzerland. This publication has been produced with the financial assistance of the European Union. -
Ecological and Evolutionary Significance of Genomic GC Content
Ecological and evolutionary significance of genomic GC PNAS PLUS content diversity in monocots a,1 a a b c,d e a a Petr Smarda , Petr Bures , Lucie Horová , Ilia J. Leitch , Ladislav Mucina , Ettore Pacini , Lubomír Tichý , Vít Grulich , and Olga Rotreklováa aDepartment of Botany and Zoology, Masaryk University, CZ-61137 Brno, Czech Republic; bJodrell Laboratory, Royal Botanic Gardens, Kew, Surrey TW93DS, United Kingdom; cSchool of Plant Biology, University of Western Australia, Perth, WA 6009, Australia; dCentre for Geographic Analysis, Department of Geography and Environmental Studies, Stellenbosch University, Stellenbosch 7600, South Africa; and eDepartment of Life Sciences, Siena University, 53100 Siena, Italy Edited by T. Ryan Gregory, University of Guelph, Guelph, Canada, and accepted by the Editorial Board August 5, 2014 (received for review November 11, 2013) Genomic DNA base composition (GC content) is predicted to signifi- arises from the stronger stacking interaction between GC bases cantly affect genome functioning and species ecology. Although and the presence of a triple compared with a double hydrogen several hypotheses have been put forward to address the biological bond between the paired bases (19). In turn, these interactions impact of GC content variation in microbial and vertebrate organ- seem to be important in conferring stability to higher order isms, the biological significance of GC content diversity in plants structures of DNA and RNA transcripts (11, 20). In bacteria, for remains unclear because of a lack of sufficiently robust genomic example, an increase in GC content correlates with a higher data. Using flow cytometry, we report genomic GC contents for temperature optimum and a broader tolerance range for a spe- 239 species representing 70 of 78 monocot families and compare cies (21, 22). -
Phylogeny of Hinterhubera, Novenia and Related
Louisiana State University LSU Digital Commons LSU Doctoral Dissertations Graduate School 2006 Phylogeny of Hinterhubera, Novenia and related genera based on the nuclear ribosomal (nr) DNA sequence data (Asteraceae: Astereae) Vesna Karaman Louisiana State University and Agricultural and Mechanical College, [email protected] Follow this and additional works at: https://digitalcommons.lsu.edu/gradschool_dissertations Recommended Citation Karaman, Vesna, "Phylogeny of Hinterhubera, Novenia and related genera based on the nuclear ribosomal (nr) DNA sequence data (Asteraceae: Astereae)" (2006). LSU Doctoral Dissertations. 2200. https://digitalcommons.lsu.edu/gradschool_dissertations/2200 This Dissertation is brought to you for free and open access by the Graduate School at LSU Digital Commons. It has been accepted for inclusion in LSU Doctoral Dissertations by an authorized graduate school editor of LSU Digital Commons. For more information, please [email protected]. PHYLOGENY OF HINTERHUBERA, NOVENIA AND RELATED GENERA BASED ON THE NUCLEAR RIBOSOMAL (nr) DNA SEQUENCE DATA (ASTERACEAE: ASTEREAE) A Dissertation Submitted to the Graduate Faculty of the Louisiana State University and Agricultural and Mechanical College in partial fulfillment of the requirements for the degree of Doctor of Philosophy in The Department of Biological Sciences by Vesna Karaman B.S., University of Kiril and Metodij, 1992 M.S., University of Belgrade, 1997 May 2006 "Treat the earth well: it was not given to you by your parents, it was loaned to you by your children. We do not inherit the Earth from our Ancestors, we borrow it from our Children." Ancient Indian Proverb ii ACKNOWLEDGMENTS I am indebted to many people who have contributed to the work of this dissertation. -
Distribution, Ecology, Chemistry and Toxicology of Plant Stinging Hairs
toxins Review Distribution, Ecology, Chemistry and Toxicology of Plant Stinging Hairs Hans-Jürgen Ensikat 1, Hannah Wessely 2, Marianne Engeser 2 and Maximilian Weigend 1,* 1 Nees-Institut für Biodiversität der Pflanzen, Universität Bonn, 53115 Bonn, Germany; [email protected] 2 Kekulé-Institut für Organische Chemie und Biochemie, Universität Bonn, Gerhard-Domagk-Str. 1, 53129 Bonn, Germany; [email protected] (H.W.); [email protected] (M.E.) * Correspondence: [email protected]; Tel.: +49-0228-732121 Abstract: Plant stinging hairs have fascinated humans for time immemorial. True stinging hairs are highly specialized plant structures that are able to inject a physiologically active liquid into the skin and can be differentiated from irritant hairs (causing mechanical damage only). Stinging hairs can be classified into two basic types: Urtica-type stinging hairs with the classical “hypodermic syringe” mechanism expelling only liquid, and Tragia-type stinging hairs expelling a liquid together with a sharp crystal. In total, there are some 650 plant species with stinging hairs across five remotely related plant families (i.e., belonging to different plant orders). The family Urticaceae (order Rosales) includes a total of ca. 150 stinging representatives, amongst them the well-known stinging nettles (genus Urtica). There are also some 200 stinging species in Loasaceae (order Cornales), ca. 250 stinging species in Euphorbiaceae (order Malphigiales), a handful of species in Namaceae (order Boraginales), and one in Caricaceae (order Brassicales). Stinging hairs are commonly found on most aerial parts of the plants, especially the stem and leaves, but sometimes also on flowers and fruits. The ecological role of stinging hairs in plants seems to be essentially defense against mammalian herbivores, while they appear to be essentially inefficient against invertebrate pests. -
Astereae, Asteraceae) Downloaded from by Guest on 04 September 2019 GISELA SANCHO1*, PETER J
bs_bs_banner Botanical Journal of the Linnean Society, 2015, 177, 78–95. With 5 figures Late Cenozoic diversification of the austral genus Lagenophora (Astereae, Asteraceae) Downloaded from https://academic.oup.com/botlinnean/article-abstract/177/1/78/2416348 by guest on 04 September 2019 GISELA SANCHO1*, PETER J. DE LANGE FLS2, MARIANO DONATO3, JOHN BARKLA4 and STEVE J. WAGSTAFF5 1División Plantas Vasculares, Museo de La Plata, FCNYM, UNLP, Paseo del Bosque s.n., La Plata, 1900, Buenos Aires, Argentina 2Ecosystems and Species Unit, Department of Conservation, Private Bag 68908, Newton 1145, Auckland, New Zealand 3ILPLA, Instituto de Limnología Dr. Raúl A. Ringuelet, FCNYM, UNLP and CONICET, 122 and 60, La Plata, 1900, Buenos Aires, Argentina 4Otago Conservancy, Department of Conservation, PO Box 5244, Dunedin 9058, New Zealand 5Allan Herbarium, Landcare Research, PO Box 69040, Lincoln 7640, New Zealand Received 14 March 2014; revised 23 May 2014; accepted for publication 30 August 2014 Lagenophora (Astereae, Asteraceae) has 14 species in New Zealand, Australia, Asia, southern South America, Gough Island and Tristan da Cunha. Phylogenetic relationships in Lagenophora were inferred using nuclear and plastid DNA regions. Reconstruction of spatio-temporal evolution was estimated using parsimony, Bayesian inference and likelihood methods, a Bayesian relaxed molecular clock and ancestral area and habitat reconstruc- tions. Our results support a narrow taxonomic concept of Lagenophora including only a core group of species with one clade diversifying in New Zealand and another in South America. The split between the New Zealand and South American Lagenophora dates from 11.2 Mya [6.1–17.4 95% highest posterior density (HPD)]. -
The Evolution of Cavitation Resistance in Conifers Maximilian Larter
The evolution of cavitation resistance in conifers Maximilian Larter To cite this version: Maximilian Larter. The evolution of cavitation resistance in conifers. Bioclimatology. Univer- sit´ede Bordeaux, 2016. English. <NNT : 2016BORD0103>. <tel-01375936> HAL Id: tel-01375936 https://tel.archives-ouvertes.fr/tel-01375936 Submitted on 3 Oct 2016 HAL is a multi-disciplinary open access L'archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destin´eeau d´ep^otet `ala diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publi´esou non, lished or not. The documents may come from ´emanant des ´etablissements d'enseignement et de teaching and research institutions in France or recherche fran¸caisou ´etrangers,des laboratoires abroad, or from public or private research centers. publics ou priv´es. THESE Pour obtenir le grade de DOCTEUR DE L’UNIVERSITE DE BORDEAUX Spécialité : Ecologie évolutive, fonctionnelle et des communautés Ecole doctorale: Sciences et Environnements Evolution de la résistance à la cavitation chez les conifères The evolution of cavitation resistance in conifers Maximilian LARTER Directeur : Sylvain DELZON (DR INRA) Co-Directeur : Jean-Christophe DOMEC (Professeur, BSA) Soutenue le 22/07/2016 Devant le jury composé de : Rapporteurs : Mme Amy ZANNE, Prof., George Washington University Mr Jordi MARTINEZ VILALTA, Prof., Universitat Autonoma de Barcelona Examinateurs : Mme Lisa WINGATE, CR INRA, UMR ISPA, Bordeaux Mr Jérôme CHAVE, DR CNRS, UMR EDB, Toulouse i ii Abstract Title: The evolution of cavitation resistance in conifers Abstract Forests worldwide are at increased risk of widespread mortality due to intense drought under current and future climate change. -
3 Conifer Quarterly Summer WPI.Indd
CConiferonifer QQuarterlyuarterly Vol. 29 No. 3 Summer 2012 Red Buttes Layers in the Klamath Mountains Photo by Michael Kauff mann In Pursuit of Pinsapos Brewer Spruce Photos by Tom Cox Photo by Michael Kauff mann The Conifer Quarterly is the publication of the American Conifer Society Contents 4 President’s Message 6 Editor’s Corner: My Addicted Conifer Syndrome 9 Developing A Dedicated Dwarf Conifer Garden in North Carolina 14 Come to California Wine Country! 18 In Pursuit of Pinsapos Vol. 29 No. 3 CONIFER QUARTERLY 1 Contents 24 Reprinted by courtesy of the British Conifer Society Journal A Workshop on Conifers in China and a Visit to the Mountain Tianmu Shan 32 Hoyt Arboretum 36 Conifer Country: A natural history and hiking guide to 35 Conifers of the Klamath Mountain region. 40 Our Dream 2 CONIFER QUARTERLY Vol. 29 No. 3 Larix decidua ‘Pendula’ spring cones. Photo by Ann and David Gunkel. The purposes of the American Conifer Society are the development, conservation, and propagation of conifers, with an emphasis on those that are dwarf or unusual, standardization of nomenclature, and education of the public. Vol. 29 No. 3 CONIFER QUARTERLY 3 arry Nau succeeded me at the end Conifer L of the July 12th ACS Board of Directors meeting. Other changes in the Quarterly Board included Colby Feller becoming the President of the Northeast Region, Summer 2012 Volume 29, No 3 and Jim Kelley the new President of The Conifer Quarterly (ISSN 8755-0490) the Central Region. Many thanks went is published quarterly by the American to Frank Goodhart and Chris Daeger Conifer Society. -
Community Patterns and Nitrogen Dynamics of Epiphytic Lichen in Jack
Ecological and Ethnoecological Classification of a Forested Landscape in the Tayal Mrqwang Territories, Taiwan (ROC) by Kevan James Berg A Thesis presented to The University of Guelph In partial fulfilment of requirements for the degree of Doctor of Philosophy in Integrative Biology Guelph, Ontario, Canada © Kevan J. Berg, May 2013 ABSTRACT ECOLOGICAL AND ETHNOECOLOGICAL CLASSIFICATION OF A FORESTED LANDSCAPE IN THE TAYAL MRQWANG TERRITORIES, TAIWAN (ROC) Kevan James Berg Advisor: University of Guelph, 2013 Dr. Steven G. Newmaster In landscape ecology, it is widely acknowledged that landscape is as much a social and cultural entity as it is biophysical, and that people and place must be jointly considered to fully understand the evolution of spatial pattern. This thesis explores the overlapping biophysical and human dimensions of landscape in the context of an (i) ecological and (ii) ethnoecological classification on the local landscape of the Tayal Mrqwang indigenous people in north central Taiwan. The goal of the ecological classification was to identify ecosystem types for a ~3000 acre landscape by relating vegetation patterns to gradients of physiography, soil, humidity, light, pixel brightness, and human modification across 76 transect sample plots. Using multivariate analyses, seven ecosystem types were identified, ranging from xeric through submesic pine, bamboo, alder, and laurel forests to mesic evergreen broadleaved and mixed coniferous forests. At the broad scale, ecosystems were distributed along gradients of elevation, soil, humidity and human modification, while factors related to local variability in physiography and soil development were more important at the fine scale (i.e., within elevational ecoregions). Within lower elevation sites in particular, patterns of forest variation and soil development were resonant of ancestral practices, including shifting cultivation, terrace farming, arboriculture, and selective extraction.