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A Molecular Phylogeny and Classification of the Largely Succulent and Mainly African Euphorbia Subg

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A Molecular Phylogeny and Classification of the Largely Succulent and Mainly African Euphorbia Subg Vol. 62 (6) • December 2013 International Journal of Taxonomy, Phylogeny and Evolution Electronic Supplement to A molecular phylogeny and classification of the largely succulent and mainly African Euphorbia subg. Athymalus (Euphorbiaceae) Jess A. Peirson, Peter V. Bruyns, Ricarda Riina, Jeffery J. Morawetz & Paul E. Berry Taxon : – TAXON 62 (6) • December 2013 Electr. Suppl. to: Peirson & al. • Phylogeny and classification of Euphorbia subg. Athymalus 92 E. schoenlandii 2 E. schoenlandii 1 E. fasciculata 1 E. esculenta 1 E. clavarioides 3 E. filiflora 4 1 E. hypogaea 2 E. esculenta 2 E. caput-medusae 4 E. procumbens 3 E. decepta 2 82 E. crassipes 4 E. brevirama E. crassipes 2 E. braunsii 2 E. multiceps 1 E. clavarioides 2 E. filiflora 1 60 E. filiflora 2 E. namibensis E. caput-medusae 2 96 E. caput-medusae 3 E. albipollinifera 1 E. albipollinifera 3 E. albipollinifera 4 E. caput-medusae 1 E. braunsii 5 E. arida 76 63 E. clavarioides 1 E. braunsii 1 63 E. decepta 1 1 60 E. hallii 1 E. hallii 2 62 E. namaquensis 1 E. procumbens 5 E. procumbens 1 E. flanaganii 1 86 E. pedemontana E. hamata 1 E. celata 1 99 55 E. quadrata E. celata 2 86 E. celata 4 E. lignosa 1 E. lignosa 4 100 E. dregeana 1 65 100 E. dregeana 2 E. dregeana 4 E. dregeana 3 97 E. platycephala E. omariana 89 E. monteiroi 3 100 E. monteiroi 2 E. monteiroi 1 88 E. gariepina 1 E. gariepina 3 72 E. globosa 3 E. globosa 1 E. bruynsii E. patula 1 90 E. wilmaniae 1 sect. Anthacanthae 62 E. wilmaniae 2 93 E. polycephala 1 77 E. polycephala 2 95 E. wilmaniae 3 E. trichadenia 1 E. trichadenia 3 56 E. pulvinata 3 E. ferox E. cumulata 56 E. meloformis 2 96 85 E. obesa subsp. symmetrica E. obesa subsp. obesa 3 68 E. obesa subsp. obesa 1 E. meloformis 4 E. mammillaris 1 68 E. jansenvillensis 3 98 E. meloformis 3 E. meloformis 1 92 E. jansenvillensis 1 E. bubalina 3 51 59 E. pulvinata 2 51 E. mammillaris 3 E. mammillaris 7 E. mammillaris 6 E. stellispina E. mammillaris 4 85 E. pentagona E. pulvinata 1 78 E. polygona 4 E. polygona 1 E. polygona 6 88 89 E. polygona 3 62 E. jansenvillensis 4 E. polygona 2 E. polygona 5 58 E. jansenvillensis 2 100 E. clava 2 E. clava 1 70 E. mammillaris 2 54 E. pseudoglobosa 1 65 E. pseudoglobosa 5 E. pseudoglobosa 3 92 76 E. mammillaris 5 87 E. pseudoglobosa 2 E. pillansii 55 E. jansenvillensis 5 E. pseudoglobosa 4 72 E. heptagona 2 100 E. susannae 2 84 E. heptagona 4 E. heptagona 1 69 62 E. susannae 1 62 E. heptagona 3 78 E. tuberosa 2 E. tuberosa 1 E. silenifolia 1 97 84 E. loricata 1 E. loricata 2 E. multifolia 1 E. bupleurifolia E. grantii 1 99 E. larica 7 99 E. larica 1 96 93 E. masirahensis 100 E. larica 2 E. rubriseminalis E. balsamifera subsp. adenensis 1 sect. Balsamis Euphorbia E. balsamifera subsp. adenensis 2 59 subg. E. balsamifera subsp. balsamifera 1 Athymalus E. balsamifera subsp. balsamifera 2 100 E. meuleniana 2 E. meuleniana 1 50 E. benthamii 100 E. crotonoides 2 sect. Crotonoides 98 100 E. crotonoides 1 92 E. smithii sect. Lyciopsis E. socotrana 1 100 sect. Somalica E. scheffleri 1 93 E. species 100 E. acalyphoides E. hadramautica 1 sect. Pseudacalypha 100 100 E. hadramautica 2 E. longituberculosa 100 E. antso 1 100 E. antso 3 sect. Antso E. antso 2 100 E. densa 100 E. nubica 87 E. cyparissioides 100 100 E. pterococca E. purpurea 70 E. guerichiana E. spinea E. phylloclada 78 E. colorata E. graminea 98 E. gymnonota 56 E. tirucalli 100 E. unispina 96 E. cooperi E. elodes 0.08 100 Calycopeplus casurinoides Neoguillauminia cleopatra Fig. S1. MaximumFig. likelihood S1. Maximum phylogram from likelihood RAxML analysis phylogram of the complete from ITS datasetRAxML of Euphorbia analysis subg. of Athymalus the complete and outgroups. ITS Sections dataset recognized of Euphorbia in our classification subg. are Athyma-indicated on the right. Maxi- mum likelihoodlus bootstrap and valuesoutgroups. (≥ 50%) are Sections indicated above recognized the branches. The in scaleour barclassification indicates the mean are number indicated of nucleotide on substitutions the right. per Maximum site. likelihood bootstrap values (≥ 50%) are indicated above the branches. The scale bar indicates the mean number of nucleotide substitutions per site. S1 TAXON 62 (6) • December 2013 Electr. Suppl. to: Peirson & al. • Phylogeny and classification of Euphorbia subg. Athymalus E. braunsii 4 85 64 E. braunsii 3 E. crassipes 1 61 E. decepta 3 E. braunsii 1 E. decepta 2 69 E. flanaganii 3 E. flanaganii 1 E. procumbens 2 E. flanaganii 2 E. procumbens 5 E. albipollinifera 1 E. procumbens 4 59 E. procumbens 3 E. albipollinifera 3 50 62 E. procumbens 1 E. hypogaea 1 E. friedrichiae E. brevirama 62 E. crassipes 3 E. crassipes 4 E. multiceps 2 E. filiflora 3 77 E. braunsii 2 E. braunsii 5 E. davyi 2 E. albipollinifera 2 E. albipollinifera 4 E. esculenta 1 60 E. crassipes 2 E. clavarioides 1 60 E. davyi 3 E. melanohydrata 60 E. davyi 1 E. decepta 1 E. pseudotuberosa E. wilmaniae 1 E. globosa 1 E. trichadenia 1 E. wilmaniae 2 E. trichadenia 2 60 E. wilmaniae 3 E. patula 2 55 90 E. patula 1 85 E. bruynsii E. globosa 2 50 E. polycephala 1 E. celata 1 100 83 E. celata 3 E. quadrata 70 E. dregeana 2 E. dregeana 1 E. namibensis 88 63 90 E. filiflora 2 E. namaquensis 2 E. filiflora 1 69 E. fasciculata 2 E. fasciculata 1 E. schoenlandii 1 60 E. caput-medusae 2 E. caput-medusae 1 sect. Anthacanthae E. restituta 82 E. gariepina 2 84 E. gariepina 1 64 E. indurescens E. lignosa 2 79 E. monteiroi 1 E. lignosa 1 72 E. lignosa 3 E. multiceps 1 E. hallii 1 E. hamata 2 94 55 E. celata 2 E. pedemontana E. grantii 1 85 98 E. grantii 3 85 E. grantii 2 76 E. omariana E. platycephala E. bubalina 3 60 63 E. clava 1 98 E. clava 2 E. bubalina 1 E. bubalina 2 E. silenifolia 2 E. heptagona 6 92 E. heptagona 3 E. heptagona 1 E. pseudoglobosa 2 E. multifolia 2 E. pillansii 98 59 E. mammillaris 5 66 E. clandestina E. pubiglans 97 E. pseudoglobosa 1 81 E. mammillaris 2 E. polygona 6 76 97 E. mammillaris 7 E. mammillaris 4 89 E. polygona 1 E. ferox E. obesa subsp. obesa 2 E. jansenvillensis 2 E. stellispina 58 E. obesa subsp. obesa 1 E. heptagona 5 E. polygona 3 E. jansenvillensis 5 E. pentagona 88 E. cumulata E. mammillaris 1 73 E. pulvinata 1 71 87 E. polygona 4 86 E. mammillaris 3 95 E. mammillaris 6 E. pulvinata 2 E. polygona 5 E. tuberosa 2 E. loricata 1 E. loricata 2 E. susannae 1 E. oxystegia E. larica 3 93 E. larica 4 E. larica 1 E. larica 8 55 E. larica 6 88 E. masirahensis 100 E. larica 5 sect. Balsamis E. larica 9 75 E. larica 10 87 96 E. balsamifera subsp. adenensis 1 E. meuleniana 1 E. balsamifera subsp. adenensis 2 E. balsamifera subsp. balsamifera 1 E. scheffleri 3 99 97 E. scheffleri 1 E. scheffleri 2 99 E. socotrana 1 sect. Somalica 61 E. socotrana 2 89 E. marie-cladieae E. hamaderoensis E. benthamii 76 98 82 E. crotonoides 2 Euphorbia E. crotonoides 1 sect. Crotonoides 98 subg. E. insarmentosa Athymalus E. caperonioides E. matabelensis 1 97 97 E. matabelensis 2 98 E. oatesii 70 100 sect. Lyciopsis 92 E. bongensis E. smithii 89 E. cuneata E. hadramautica 1 97 100 E. acalyphoides sect. Pseudacalypha E. longituberculosa E. antso 3 100 72 99 E. antso 1 sect. Antso E. antso 2 E. colorata 100 94 E. graminea E. phylloclada 98 E. guerichiana E. spinea 100 E. gymnonota 99 98 E. elodes E. unispina 100 93 E. cooperi E. tirucalli E. nubica 98 100 E. densa 100 E. cyparissioides E. purpurea 100 E. pterococca 0.0090 Calycopeplus casurinoides 100 Neoguillauminia cleopatra Fig. S2. Maximum likelihood Fig.phylogram S2. fromMaximum RAxML analysis likelihood of the complete phylogram ndhF dataset from of Euphorbia RAxML subg. analysis Athymalus of and the outgroups. complete Sections ndhF recognized dataset in our classification of are indicated on the right. Maximum likelihood bootstrapEuphorbia values (≥ 50%) subg.are indicated Athymalus above the branches. and outgroups.The scale bar indicates Sections the mean recognized number of nucleotide in our substitutions classification per site. are indicated on the right. Maximum likelihood bootstrap values (≥ 50%) are indicated above the branches. The scale bar indicates the mean number of nucleotide substitutions per site. S2 TAXON 62 (6) • December 2013 Electr. Suppl. to: Peirson & al. • Phylogeny and classification of Euphorbia subg. Athymalus E. davyi 1 E. decepta 1 E. multiceps 2 E. esculenta 1 E. clavarioides 1 E. melanohydrata E. friedrichiae 56 E. davyi 2 E. brevirama E. crassipes 2 E. braunsii 2 53 E. procumbens 1 E. hypogaea 2 E. flanaganii 1 E. albipollinifera 1 63 51 E. braunsii 1 E. crassipes 1 E. decepta 2 91 E. hypogaea 1 68 E. namaquensis 2 E. namibensis E. filiflora 1 E. restituta 67 E. caput-medusae 2 E. schoenlandii 1 E. fasciculata 1 E. arida E. caput-medusae 1 60 E. multiceps 1 E. hallii 1 E. namaquensis 1 95 E. celata 2 94 E. hamata 2 E. hamata 1 86 E. pedemontana 83 E.
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