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Biodiversity and Conservation Volume 6 Number 11, November 2014 ISSN 2141-243X
International Journal of Biodiversity and Conservation Volume 6 Number 11, November 2014 ISSN 2141-243X ABOUT IJBC The International Journal of Biodiversity and Conservation (IJBC) (ISSN 2141-243X) is published Monthly (one volume per year) by Academic Journals. International Journal of Biodiversity and Conservation (IJBC) provides rapid publication (monthly) of articles in all areas of the subject such as Information Technology and its Applications in Environmental Management and Planning, Environmental Management and Technologies, Green Technology and Environmental Conservation, Health: Environment and Sustainable Development etc. The Journal welcomes the submission of manuscripts that meet the general criteria of significance and scientific excellence. Papers will be published shortly after acceptance. All articles published in IJBC are peer reviewed. Submission of Manuscript Please read the Instructions for Authors before submitting your manuscript. The manuscript files should be given the last name of the first author Click here to Submit manuscripts online If you have any difficulty using the online submission system, kindly submit via this email [email protected]. With questions or concerns, please contact the Editorial Office at [email protected]. Editor-In-Chief Associate Editors Prof. Samir I. Ghabbour Dr. Shannon Barber-Meyer Department of Natural Resources, World Wildlife Fund Institute of African Research & Studies, Cairo 1250 24th St. NW, Washington, DC 20037 University, Egypt USA Dr. Shyam Singh Yadav Editors National Agricultural Research Institute, Papua New Guinea Dr. Edilegnaw Wale, PhD Department of Agricultural Economics School of Agricultural Sciences and Agribusiness Dr. Michael G. Andreu University of Kwazulu-Natal School of Forest Resources and Conservation P bag X 01 Scoffsville 3209 University of Florida - GCREC Pietermaritzburg 1200 N. -
Alphabetical Lists of the Vascular Plant Families with Their Phylogenetic
Colligo 2 (1) : 3-10 BOTANIQUE Alphabetical lists of the vascular plant families with their phylogenetic classification numbers Listes alphabétiques des familles de plantes vasculaires avec leurs numéros de classement phylogénétique FRÉDÉRIC DANET* *Mairie de Lyon, Espaces verts, Jardin botanique, Herbier, 69205 Lyon cedex 01, France - [email protected] Citation : Danet F., 2019. Alphabetical lists of the vascular plant families with their phylogenetic classification numbers. Colligo, 2(1) : 3- 10. https://perma.cc/2WFD-A2A7 KEY-WORDS Angiosperms family arrangement Summary: This paper provides, for herbarium cura- Gymnosperms Classification tors, the alphabetical lists of the recognized families Pteridophytes APG system in pteridophytes, gymnosperms and angiosperms Ferns PPG system with their phylogenetic classification numbers. Lycophytes phylogeny Herbarium MOTS-CLÉS Angiospermes rangement des familles Résumé : Cet article produit, pour les conservateurs Gymnospermes Classification d’herbier, les listes alphabétiques des familles recon- Ptéridophytes système APG nues pour les ptéridophytes, les gymnospermes et Fougères système PPG les angiospermes avec leurs numéros de classement Lycophytes phylogénie phylogénétique. Herbier Introduction These alphabetical lists have been established for the systems of A.-L de Jussieu, A.-P. de Can- The organization of herbarium collections con- dolle, Bentham & Hooker, etc. that are still used sists in arranging the specimens logically to in the management of historical herbaria find and reclassify them easily in the appro- whose original classification is voluntarily pre- priate storage units. In the vascular plant col- served. lections, commonly used methods are systema- Recent classification systems based on molecu- tic classification, alphabetical classification, or lar phylogenies have developed, and herbaria combinations of both. -
Title General Flowering in an Asesonal Tropical Forest : Plant Reproductive Phenology and Plant-Pollinator Interactions in A
General flowering in an asesonal tropical forest : plant Title reproductive phenology and plant-pollinator interactions in a lowland dipterocarp forest in Sarawak( Dissertation_全文 ) Author(s) Sakai, Shoko Citation 京都大学 Issue Date 1999-03-23 URL https://doi.org/10.11501/3149376 Right Type Thesis or Dissertation Textversion author Kyoto University Shoko Sakai 1 Doctoral thesis General flowering in an aseasonal tropical forest: plant reproductive phenology and plant-pollinator interactions in a lowland dipterocarp forest in Sarawak i1-:;r"J'Ji~tt!3"79 1 \t5-:t:t-*1=d=311 ~f®~m~9m"7 I .J o 9-c f@~7ll-~fJJ~t§B:fJ=f§ Shoko SAKAI Fuculty of Science, Kyoto University March 1999 Shoko Sakai 2 CONTENTS Summary 4 Chapter 1. Introduction 6 Chapter 2. Canopy observation system 11 Chapter 3. Plant reproductive phenology 16 Chapter 4. Pollination system in a general flowering period 56 Chapter 5. General discussion 77 Acknowledgments 88 Reference 89 Appendix 99 Shoko Sakai 3 Jttm 7:; 7 ~m~f~:lt!!. 7 7 ;\ tf .:t-w-r: I±, - =for oo:rE e: Df'Jn ~ :m~-IJ\jo G n -c \,t) ~ o -=for 001£ C: I±, 2-10 ifmJM-r:w7Ct ~ f~hX:T ~ :f*4 ~f!Hi-/J\~7 JJ ~Fa, ~:.:J(4 C: 001£ · ~~T ~ ;m~ -r:~ ~ o -: ~:m~ ~~~~ t-:=&IJ, 1992ifiJ" G? v- Y 7 · -IT 7 r:7 71+1 · 7 / ~-Jv00J1.0~ ~=13 v)-c, JE:M89~: 305{i576f~1*~til!fo/J~001E · fffl~15th~~c&~l .. 53'-;fJl-~13-:~-:>t-:= o i-~~ :lf!;, 1992if-IJ"G 19951f:i-r:'±~1tjt~~til!fo/J~~ ~~OO:rEL-cv)~{i, ~~v)l±f~i*~~Uil '±~~: 2-5% C: 1~-/J"-:> t-:=-/J\, f-~~Ui!L± 19961f: 3 JJ iJ" Gf&,Jt~:_t~ L-c 20% ~=~ l, - =foTOO 1E ~ ~c&~ L t-:= o 001E~Uil~ ~1tL± 5 JJ C: 9 Jn: I!- 7 ~ ~--:::> =L1J ~ ~ L t-:: o it-::, - =for 001£ L± 70 ;~-- r Jv ~-: -t~tH*n" G*f'*f~*-?~~ 7 / i -r:~l*~til!fo/J-/J\--:::> < ~ te-t:m~t! e: v) ~-: (: -/)\ b -/)'> -:> t-:= 0 7 7 ;\if .:t- W~fil!fo/J I± i- ~ Li C: lv C:"-/J\j}J!fo/J ~: ~~' ~ {t(fF L-c v) ~ ~ -r:, - =for OO:f£-/J\13-: ~ C:~f;t~~11ff~-/J\f&,~=r'§J < ~~ 0 ttg:I±1Eit?]Jjt~z Lv)w-r:-=foT001E~~~m-~T- ~AiJ\C:"~ J:: ~ 1: 1 iJ" ~ b n -c \,t) ~ ~ iJ"I±, -=for oo:rE ~ &~J <" ~ * ~ ~ rQ~m~ ---:::> -c- ~ ~ o -: n 1 -r: . -
Irvingia Gabonensis Irvingiaceae (Aubrey-Lecomte Ex O. Rorke) Baill
Irvingia gabonensis (Aubrey-Lecomte ex O. Rorke) Baill. Irvingiaceae dika nut LOCAL NAMES English (wild mango,native mango,duiker nut,bush mango,bread tree,African mango tree); French (manguier sauvage,bobo); Hausa (goron,biri); Igbo (obono); Trade name (dika nut); Yoruba (oro) BOTANIC DESCRIPTION Irvingia gabonensis grows to a height of 15-40 m, bole slightly buttressed. It has a dense, compact crown, branchlets ending in a narrow, curved, stipular sheath covering the leaf bud. Bark greyish, smooth or very slightly scaly; slash yellowish-brown to light yellow, brittle. Fruit on three-year-old trees in Onne, Nigeria (Anthony Simons) Leaves 5-15 x 2.5-6 cm, elliptic to slightly obovate, 1 margin often a little more rounded than the other, acute or shortly acuminate, cuneate or slightly rounded at the base; leathery dark green and glossy above; with 5- 10 pairs of irregular lateral veins, the lower ones running out nearly to the margin. Flowers yellowish to greenish-white, in slender, clustered racemes or small panicles above the leaves and about as long as them, or on the branchlets and younger branchlets; individual flower stalks slender, about 6 mm long, petals bent right back and soon falling off, disc bright yellow. Tree in degraded forest near Port Harcourt, Fruits yellowish when ripe, broadly ellipsoid and variable in size between Nigeria. (Anthony Simons) varieties, 5-7.5 cm with a yellow, fibrous pulp surrounding a large seed. The genus name commemorates E.G. Irving, 1816-1855, a Scots botanist. BIOLOGY I. gabonensis is hermaphroditic, with flowers being pollinated by Coleoptera, Diptera, Hymenoptera and Lepidoptera. -
Evolutionary History of Floral Key Innovations in Angiosperms Elisabeth Reyes
Evolutionary history of floral key innovations in angiosperms Elisabeth Reyes To cite this version: Elisabeth Reyes. Evolutionary history of floral key innovations in angiosperms. Botanics. Université Paris Saclay (COmUE), 2016. English. NNT : 2016SACLS489. tel-01443353 HAL Id: tel-01443353 https://tel.archives-ouvertes.fr/tel-01443353 Submitted on 23 Jan 2017 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. NNT : 2016SACLS489 THESE DE DOCTORAT DE L’UNIVERSITE PARIS-SACLAY, préparée à l’Université Paris-Sud ÉCOLE DOCTORALE N° 567 Sciences du Végétal : du Gène à l’Ecosystème Spécialité de Doctorat : Biologie Par Mme Elisabeth Reyes Evolutionary history of floral key innovations in angiosperms Thèse présentée et soutenue à Orsay, le 13 décembre 2016 : Composition du Jury : M. Ronse de Craene, Louis Directeur de recherche aux Jardins Rapporteur Botaniques Royaux d’Édimbourg M. Forest, Félix Directeur de recherche aux Jardins Rapporteur Botaniques Royaux de Kew Mme. Damerval, Catherine Directrice de recherche au Moulon Président du jury M. Lowry, Porter Curateur en chef aux Jardins Examinateur Botaniques du Missouri M. Haevermans, Thomas Maître de conférences au MNHN Examinateur Mme. Nadot, Sophie Professeur à l’Université Paris-Sud Directeur de thèse M. -
Plant Diversity Assessments in Tropical Forest of SE Asia
August 18, 2015, 6th International Barcode of Life Conference Barcodes to Biomes Plant Diversity Assessments in tropical forest of SE Asia Tetsukazu Yahara Center for Asian Conservation Ecology & Institute of Decision Science for a Sustainable Society Kyushu University, Japan Goal: assessing plant species loss under the rapid deforestation in SE Asia Laumonier et al. (2010) Outline • Assessing trends of species richness, PD and community structure in 32 permanent plots of 50m x 50m in Cambodia • Recording status of all the vascular plant species in 100m x 5m plots placed in Vietnam, Cambodia, Thailand, Malaysia and Indonesia • Assessing extinction risks in some representative groups: case studies in Bauhinia and Dalbergia (Fabaceae) Deforestation in Cambodia Sep. 2010 Jan. 2011 Recently, tropical lowland forest of Cambodia is rapidly disappearing; assessments are urgently needed. Locations of plot surveys in Cambodia Unknown taxonomy of plot trees Top et al. (2009); 88 spp (36%) of 243 spp. remain unidentified. Top et al. (2009); many species are mis-identified. Use of DNA barcodes/phylogenetic tree 32 Permanent plots in Kg. Thom 347 species Bayesian method 14 calibration points Estimated common ancestor of Angiosperms 159 Ma 141-199 Ma (Bell et al. 2010) Scientific name: ???? rbcL Local name: Kro Ob Ixonanthes chinensis (544/545) Specimen No.: 2002 Ixonanthes reticulata (556/558) Cyrillopsis paraensis (550/563) Power point slides are prepared for all the plot tree species Scientific name: Ixonanthaceae Ixonanthes reticulata Jack Bokor 240m Local name: Tromoung Sek Phnom matK Ixonanthes chinensis (747/754) Gaps= 0/754 No. 4238 Ixonanthes reticulata (746/754) Gaps= 0/754 # Syn. = Ixonanthes cochinchinensis Pierrei Cyrillopsis paraensis (710/754) Gaps= 0/754“ Ixonanthaceae Ixonanthes reticulata Jack 4238 Specimen image from Kew Herbarium Catalogue http://apps.kew.org/herbcat/gotoHomePage.do Taxonomic papers & Picture Guides Toyama et al. -
621 R. Kool Leiden)
Ixonanthaceae R. Kool Leiden) 2 This small family of or 3 Old World rain-forest genera was already recognized as a separate suprageneric taxon by PLANCHON (1847) and PLANCHON & KLOTZSCH (1856), who relegated it to the affinity of Ochnaceae, later correctly referred to Linaceae as a subfamily Ixonanthoideaeby HUB. WINKLER (1931) and finally recognized as a family of its own by EXELL & MENDONÇA (1951). the of the As to number genera containedin family, there is no unanimity of opinion. FORMAN 8 NOOTEBOOM that (1965: 523) referred genera to the family, but (1967) argued several belong to Simaroubaceae. After careful consideration 3 genera are admitted here in Ixonanthaceae sensu stricto: Cyrillopsis Kuhlm. from South America, Ochthocosmus BENTH. (incl. Phyllocosmus KLOTZSCH) from tropical America and Africa, and Ixonanthes JACK from Indo-Malesia. The three genera form a close-knit group. They are all small and the wide distributionin the tropics points to a high age of the group. We must mentionthat there is a, doubtful, fourth genus, Allantospermum FORMAN, which the author reckons to the Ixonanthaceae. It occurs with one species in Borneo and another one in Ma- NOOTEBOOM The dagascar. (1967, 1972) included this genus in Simaroubaceae. morphology, chemotaxonomy, and palynology corroborate this affinity, but the anatomy of wood and leaf (VAN WELZEN & BAAS, 1984) is just in favour of affinity with Ixonanthaceae. We refrain from a long discussion of the merits of HALLIER'S attempt (1923) to have Linaceae as a hugecomplex centre of affinities and confine ourselves to what is usually accepted nowadays in recognizing a few families grouped around Linaceae sensu stricto. -
The Evolutionary Fate of Rpl32 and Rps16 Losses in the Euphorbia Schimperi (Euphorbiaceae) Plastome Aldanah A
www.nature.com/scientificreports OPEN The evolutionary fate of rpl32 and rps16 losses in the Euphorbia schimperi (Euphorbiaceae) plastome Aldanah A. Alqahtani1,2* & Robert K. Jansen1,3 Gene transfers from mitochondria and plastids to the nucleus are an important process in the evolution of the eukaryotic cell. Plastid (pt) gene losses have been documented in multiple angiosperm lineages and are often associated with functional transfers to the nucleus or substitutions by duplicated nuclear genes targeted to both the plastid and mitochondrion. The plastid genome sequence of Euphorbia schimperi was assembled and three major genomic changes were detected, the complete loss of rpl32 and pseudogenization of rps16 and infA. The nuclear transcriptome of E. schimperi was sequenced to investigate the transfer/substitution of the rpl32 and rps16 genes to the nucleus. Transfer of plastid-encoded rpl32 to the nucleus was identifed previously in three families of Malpighiales, Rhizophoraceae, Salicaceae and Passiforaceae. An E. schimperi transcript of pt SOD-1- RPL32 confrmed that the transfer in Euphorbiaceae is similar to other Malpighiales indicating that it occurred early in the divergence of the order. Ribosomal protein S16 (rps16) is encoded in the plastome in most angiosperms but not in Salicaceae and Passiforaceae. Substitution of the E. schimperi pt rps16 was likely due to a duplication of nuclear-encoded mitochondrial-targeted rps16 resulting in copies dually targeted to the mitochondrion and plastid. Sequences of RPS16-1 and RPS16-2 in the three families of Malpighiales (Salicaceae, Passiforaceae and Euphorbiaceae) have high sequence identity suggesting that the substitution event dates to the early divergence within Malpighiales. -
Ancistrocladaceae
Soltis et al—American Journal of Botany 98(4):704-730. 2011. – Data Supplement S2 – page 1 Soltis, Douglas E., Stephen A. Smith, Nico Cellinese, Kenneth J. Wurdack, David C. Tank, Samuel F. Brockington, Nancy F. Refulio-Rodriguez, Jay B. Walker, Michael J. Moore, Barbara S. Carlsward, Charles D. Bell, Maribeth Latvis, Sunny Crawley, Chelsea Black, Diaga Diouf, Zhenxiang Xi, Catherine A. Rushworth, Matthew A. Gitzendanner, Kenneth J. Sytsma, Yin-Long Qiu, Khidir W. Hilu, Charles C. Davis, Michael J. Sanderson, Reed S. Beaman, Richard G. Olmstead, Walter S. Judd, Michael J. Donoghue, and Pamela S. Soltis. Angiosperm phylogeny: 17 genes, 640 taxa. American Journal of Botany 98(4): 704-730. Appendix S2. The maximum likelihood majority-rule consensus from the 17-gene analysis shown as a phylogram with mtDNA included for Polyosma. Names of the orders and families follow APG III (2009); other names follow Cantino et al. (2007). Numbers above branches are bootstrap percentages. 67 Acalypha Spathiostemon 100 Ricinus 97 100 Dalechampia Lasiocroton 100 100 Conceveiba Homalanthus 96 Hura Euphorbia 88 Pimelodendron 100 Trigonostemon Euphorbiaceae Codiaeum (incl. Peraceae) 100 Croton Hevea Manihot 10083 Moultonianthus Suregada 98 81 Tetrorchidium Omphalea 100 Endospermum Neoscortechinia 100 98 Pera Clutia Pogonophora 99 Cespedesia Sauvagesia 99 Luxemburgia Ochna Ochnaceae 100 100 53 Quiina Touroulia Medusagyne Caryocar Caryocaraceae 100 Chrysobalanus 100 Atuna Chrysobalananaceae 100 100 Licania Hirtella 100 Euphronia Euphroniaceae 100 Dichapetalum 100 -
Vessel Grouping in Dicotyledon Wood Sherwin Carlquist
Aliso: A Journal of Systematic and Evolutionary Botany Volume 10 | Issue 4 Article 3 1984 Vessel Grouping in Dicotyledon Wood Sherwin Carlquist Follow this and additional works at: http://scholarship.claremont.edu/aliso Part of the Botany Commons Recommended Citation Carlquist, Sherwin (1984) "Vessel Grouping in Dicotyledon Wood," Aliso: A Journal of Systematic and Evolutionary Botany: Vol. 10: Iss. 4, Article 3. Available at: http://scholarship.claremont.edu/aliso/vol10/iss4/3 ALISO I 0(4), 1984, pp. 505-525 VESSEL GROUPING IN DICOTYLEDON WOOD: SIGNIFICANCE AND RELATIONSHIP TO IMPERFORATE TRACHEARY ELEMENTS Sherwin Carlquist Abstract.-A hitherto unappreciated correlation exists between nature of vessel grouping and nature of imperforate tracheary elements in wood of dicotyledons at large: families and genera with true tracheids (large fully bordered pits common on both radial and tangential walls) have solitary vessels. Presence of true tracheids as a subsidiary conductive system is hy pothesized to render vessel grouping a superfluous adaptation. Vessel group ing does occur to various degrees in taxa with fiber-tracheids or libriform fibers; the degree of grouping is related to likelihood or seriousness of vessel failure by air embolisms because of either drought or frost. Grouping of vessels is regarded as a way of providing alternate conduits whereby water can be carried in the same pathways in case one or several vessels in a group are incapacitated by air embolisms. Presence of vascular tracheids, if suffi ciently abundant, is held to be correlated with smaller degree of vessel grouping because vascular tracheids can form a subsidiary conductive sys tem; small numbers of vascular tracheids do not affect vessel grouping pat terns. -
Comparative Genomics of the Balsaminaceae Sister Genera Hydrocera Triflora and Impatiens Pinfanensis
International Journal of Molecular Sciences Article Comparative Genomics of the Balsaminaceae Sister Genera Hydrocera triflora and Impatiens pinfanensis Zhi-Zhong Li 1,2,†, Josphat K. Saina 1,2,3,†, Andrew W. Gichira 1,2,3, Cornelius M. Kyalo 1,2,3, Qing-Feng Wang 1,3,* and Jin-Ming Chen 1,3,* ID 1 Key Laboratory of Aquatic Botany and Watershed Ecology, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China; [email protected] (Z.-Z.L.); [email protected] (J.K.S.); [email protected] (A.W.G.); [email protected] (C.M.K.) 2 University of Chinese Academy of Sciences, Beijing 100049, China 3 Sino-African Joint Research Center, Chinese Academy of Sciences, Wuhan 430074, China * Correspondence: [email protected] (Q.-F.W.); [email protected] (J.-M.C.); Tel.: +86-27-8751-0526 (Q.-F.W.); +86-27-8761-7212 (J.-M.C.) † These authors contributed equally to this work. Received: 21 December 2017; Accepted: 15 January 2018; Published: 22 January 2018 Abstract: The family Balsaminaceae, which consists of the economically important genus Impatiens and the monotypic genus Hydrocera, lacks a reported or published complete chloroplast genome sequence. Therefore, chloroplast genome sequences of the two sister genera are significant to give insight into the phylogenetic position and understanding the evolution of the Balsaminaceae family among the Ericales. In this study, complete chloroplast (cp) genomes of Impatiens pinfanensis and Hydrocera triflora were characterized and assembled using a high-throughput sequencing method. The complete cp genomes were found to possess the typical quadripartite structure of land plants chloroplast genomes with double-stranded molecules of 154,189 bp (Impatiens pinfanensis) and 152,238 bp (Hydrocera triflora) in length. -
Ancistrocladaceae
Soltis et al—American Journal of Botany 98(4):704-730. 2011. – Data Supplement S2 – page 1 Soltis, Douglas E., Stephen A. Smith, Nico Cellinese, Kenneth J. Wurdack, David C. Tank, Samuel F. Brockington, Nancy F. Refulio-Rodriguez, Jay B. Walker, Michael J. Moore, Barbara S. Carlsward, Charles D. Bell, Maribeth Latvis, Sunny Crawley, Chelsea Black, Diaga Diouf, Zhenxiang Xi, Catherine A. Rushworth, Matthew A. Gitzendanner, Kenneth J. Sytsma, Yin-Long Qiu, Khidir W. Hilu, Charles C. Davis, Michael J. Sanderson, Reed S. Beaman, Richard G. Olmstead, Walter S. Judd, Michael J. Donoghue, and Pamela S. Soltis. Angiosperm phylogeny: 17 genes, 640 taxa. American Journal of Botany 98(4): 704-730. Appendix S2. The maximum likelihood majority-rule consensus from the 17-gene analysis shown as a phylogram with mtDNA included for Polyosma. Names of the orders and families follow APG III (2009); other names follow Cantino et al. (2007). Numbers above branches are bootstrap percentages. 67 Acalypha Spathiostemon 100 Ricinus 97 100 Dalechampia Lasiocroton 100 100 Conceveiba Homalanthus 96 Hura Euphorbia 88 Pimelodendron 100 Trigonostemon Euphorbiaceae Codiaeum (incl. Peraceae) 100 Croton Hevea Manihot 10083 Moultonianthus Suregada 98 81 Tetrorchidium Omphalea 100 Endospermum Neoscortechinia 100 98 Pera Clutia Pogonophora 99 Cespedesia Sauvagesia 99 Luxemburgia Ochna Ochnaceae 100 100 53 Quiina Touroulia Medusagyne Caryocar Caryocaraceae 100 Chrysobalanus 100 Atuna Chrysobalananaceae 100 100 Licania Hirtella 100 Euphronia Euphroniaceae 100 Dichapetalum 100