Genetic Investigation of Patients with Tall Stature

Total Page:16

File Type:pdf, Size:1020Kb

Genetic Investigation of Patients with Tall Stature 2 182 E Vasco de Albuquerque Genetic investigation of tall 182:2 139–147 Clinical Study Albuquerque and others stature patients Genetic investigation of patients with tall stature Edoarda Vasco de Albuquerque Albuquerque1, Mariana Ferreira de Assis Funari2, Elisângela Pereira de Souza Quedas1, Rachel Sayuri Honjo Kawahira3, Raquel Soares Jallad4, Thaís Kataoka Homma1, Regina Matsunaga Martin2,5, Vinicius Nahime Brito2, Alexsandra Christianne Malaquias1,6, Antonio Marcondes Lerario1,7, Carla Rosenberg8, Ana Cristina Victorino Krepischi8, Chong Ae Kim3, Ivo Jorge Prado Arnhold2 and Alexander Augusto de Lima Jorge1 1Unidade de Endocrinologia Genética (LIM25), 2Unidade de Endocrinologia do Desenvolvimento, Laboratório de Hormônios e Genética Molecular (LIM42), Hospital das Clínicas da Faculdade de Medicina, Universidade de São Paulo (USP), São Paulo, Brasil, 3Unidade de Genética do Instituto da Criança, Hospital das Clínicas da Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brasil, 4Unidade de Neuroendocrinologia, 5Unidade de Doenças Osteometabólicas, Hospital das Clínicas da Faculdade de Medicina, Universidade de São Paulo (USP), São Paulo, Brasil, 6Unidade de Endocrinologia Pediátrica, Correspondence Departamento de Pediatria, Irmandade da Santa Casa de Misericórdia de São Paulo, São Paulo, Brasil, 7Division of should be addressed Metabolism, Endocrinology and Diabetes, Department of Internal Medicine, University of Michigan, Ann Arbor, to A A L Jorge Michigan, USA, and 8Instituto de Biociências (IB), Universidade de São Paulo (USP), São Paulo, Brasil Email [email protected] Abstract Context: Patients with tall stature often remain undiagnosed after clinical investigation and few studies have genetically assessed this group, most of them without a systematic approach. Objective: To assess prospectively a group of individuals with tall stature, with and without syndromic features, and to establish a molecular diagnosis for their growth disorder. Design: Screening by karyotype (n = 42), chromosome microarray analyses (CMA) (n = 16), MS-MLPA (n = 2) targeted panel (n = 12) and whole-exome sequencing (n = 31). European Journal of Endocrinology Patients and methods: We selected 42 patients with tall stature after exclusion of pathologies in GH/IGF1 axis and divided them into syndromic (n = 30) and non-syndromic (n = 12) subgroups. Main outcome measures: Frequencies of pathogenic findings. Results: We identified two patients with chromosomal abnormalities including SHOX trisomy by karyotype, one 9q22.3 microdeletion syndrome by CMA, two cases of Beckwith–Wiedemann syndrome by targeted MS-MLPA analysis and nine cases with heterozygous pathogenic or likely pathogenic genetic variants by multigene analysis techniques (FBN1 = 3, NSD1 = 2, NFIX = 1, SUZ12 = 1, CHD8 = 1, MC4R = 1). Three of 20 patients analyzed by WES had their diagnosis established. Only one non-syndromic patient had a definitive diagnosis. The sequential genetic assessment diagnosed 14 out of 42 (33.3%) tall patients. Conclusion: A systematic molecular approach of patients with tall stature was able to identify the etiology in 13 out of 30 (43.3%) syndromic and 1 out of 12 (8.3%) non-syndromic patients, contributing to the genetic counseling and avoiding unfavorable outcomes in the syndromic subgroup. European Journal of Endocrinology (2020) 182, 139–147 https://eje.bioscientifica.com © 2020 European Society of Endocrinology Published by Bioscientifica Ltd. https://doi.org/10.1530/EJE-19-0785 Printed in Great Britain Downloaded from Bioscientifica.com at 09/25/2021 09:15:33PM via free access -19-0785 Clinical Study E Vasco de Albuquerque Genetic investigation of tall 182:2 140 Albuquerque and others stature patients Introduction Endocrinology outpatient clinic in a tertiary center. Seven patients were already followed in Genetic Endocrinology Tall stature is defined as a height above 2 standard-deviation Unit, and the remaining patients were initially followed score (SDS) from the mean of a specific population after in other outpatient clinics and recruited from Medical adjustment for gender and age and can also be defined as a Genetics (n = 12), Neuroendocrinology (n = 9) and other height above 2 SDS from mid-parental height (1). Similarly endocrinology units (n = 11) at the same tertiary center. to short stature cases, tall individuals are commonly Eight patients were referred from other medical specialties referred to an endocrinologic evaluation of the GH/IGF1 and private clinics during the recruitment period. The axis, and in most patients, there is no evidence of abnormal study was approved by the Hospital das Clinicas Ethics GH secretion leading to enhanced growth (1). Committee (CAPPesq; approval number 1.854.859). After a careful clinical evaluation and a few Patients or parents (or legal guardians) provided written complementary tests to detect hidden congenital informed consent after careful explanation and all malformations (1), tall individuals can be classified procedures were in accordance with local ethical standards as syndromic or non-syndromic. Syndromic patients and the Declaration of Helsinki. show a combination of relevant alterations, such as All patients were submitted to a careful clinical neurodevelopmental delay, macrocephaly, major cardiac assessment and physical examination was performed by a abnormalities, facial dysmorphic features and skeletal geneticist (R S H K or C A K) and/or by an endocrinologist alterations, and these characteristics usually cluster in with expertise in dysmorphology (A A L J) in order to unique, classical phenotypes that lead to the identification detect dysmorphic features, neurodevelopmental delay, of the underlying genetic etiology. However, many of macrocephaly and family history of tall stature. Patients these conditions, such as Sotos (OMIM 117550), Weaver were classified as syndromic if they showed developmental (OMIM 277590) and Malan (OMIM 614753) syndromes, delay/autism spectrum disorder/intellectual disability, have overlapping phenotypes, making it very difficult to if they showed multiple major malformations or if they clinically distinguish these conditions, especially later had multiple dysmorphic features. Pubertal status was in life (2, 3, 4, 5). Besides, most genes already associated assessed according to Tanner and Marshall stages (10, with generalized overgrowth are large and do not have 11). Standing and sitting heights were measured using a hotspots, which makes an approach by candidate gene a calibrated stadiometer to the nearest 0.1 cm, and weight time and labor-consuming option to attempt diagnosis was measured using an electronic scale. BMI was calculated confirmation (3, 6). as the division between weight in kilograms and height European Journal of Endocrinology Few studies were published aiming to identify the in square meters. Measurements were converted to SDS etiology of the growth disorder of these patients, mostly using age- and sex-specified norms 12( , 13). Arm span and only when a clinical suspicion arose (7, 8, 9). To our head circumference were obtained using a measuring tape. knowledge only one report has systematically investigated Abnormal body proportion was defined by sitting height/ a selected cohort of individuals with intellectual disability height ratio SDS <−2 or arm span/height ratio >1.05 (2, and overgrowth (tall stature and/or macrocephaly) using 14). Measures were also obtained from all available relatives a multigene analysis approach, reaching a diagnostic rate and mid-parental height was calculated using the formula of 50% (9). ((father’s height + mother’s height ± 13 cm)/2) and then After the spread of multigene analysis techniques such expressed in SDS. We had no access to the measurements as targeted panel and whole exome sequencing (WES), of 15 parents (mother and/or father) since they were either the genetic evaluation of patients with tall stature became deceased or unavailable due to social problems. feasible even in cases without prior clinical diagnosis. In Laboratory work-up included basal IGF1, TSH, free this context, the present study prospectively evaluated a T4, LH, FSH and testosterone/estradiol (according to the cohort of patients with tall stature, both syndromic and patient sex) measurements. All hormones were assessed non-syndromic, using targeted panel and/or WES, after an by an electrochemiluminescence method (Cobas e601, initial laboratory and genetic assessment. Roche Diagnostics). IGF1 levels were expressed as SDS for age and sex according to reference values provided Patients and methods by the assay manufacturer. When IGF1 SDS >2, an oral glucose tolerance test was performed and only individuals We enrolled 46 children and adults referred for evaluation who achieved GH suppression <1 μg/L were included in of tall stature from January 2016 to June 2019 in our Genetic this study (15). Four individuals were excluded due to https://eje.bioscientifica.com Downloaded from Bioscientifica.com at 09/25/2021 09:15:33PM via free access Clinical Study E Vasco de Albuquerque Genetic investigation of tall 182:2 141 Albuquerque and others stature patients pituitary gigantism. Children with precocious puberty in five patients (three syndromic and two non-syndromic). were also excluded, except for one syndromic female One non-syndromic patient was analyzed together with patient who achieved an adult height SDS >2 even an affected brother and two others with their unaffected without appropriate treatment. Subjects were submitted relative,
Recommended publications
  • NPR1 Paralogs of Arabidopsis and Their Role in Salicylic Acid Perception
    RESEARCH ARTICLE NPR1 paralogs of Arabidopsis and their role in salicylic acid perception ☯ ¤a☯ ¤b MarõÂa Jose Castello , Laura Medina-PucheID , JuliaÂn Lamilla , Pablo TorneroID* Instituto de BiologõÂa Molecular y Celular de Plantas, Universitat Politècnica de València -Consejo Superior de Investigaciones CientõÂficas, Valencia, SPAIN ☯ These authors contributed equally to this work. ¤a Current address: Shanghai Center for Plant Stress Biology, Shanghai Institutes of Biological Sciences, Chinese Academy of Sciences, Shanghai, China a1111111111 ¤b Current address: Laboratorio de BiotecnologõÂa Vegetal, Facultad de Ciencias BaÂsicas y Aplicadas, a1111111111 Universidad Militar "Nueva Granada", Costado Oriental, Colombia a1111111111 * [email protected] a1111111111 a1111111111 Abstract Salicylic acid (SA) is responsible for certain plant defence responses and NON EXPRESSER OF PATHOGENESIS RELATED 1 (NPR1) is the master regulator of SA perception. In Arabi- OPEN ACCESS dopsis thaliana there are five paralogs of NPR1. In this work we tested the role of these para- Citation: Castello MJ, Medina-Puche L, Lamilla J, logs in SA perception by generating combinations of mutants and transgenics. NPR2 was Tornero P (2018) NPR1 paralogs of Arabidopsis and their role in salicylic acid perception. PLoS the only paralog able to partially complement an npr1 mutant. The null npr2 reduces SA per- ONE 13(12): e0209835. https://doi.org/10.1371/ ception in combination with npr1 or other paralogs. NPR2 and NPR1 interacted in all the con- journal.pone.0209835 ditions tested, and NPR2 also interacted with other SA-related proteins as NPR1 does. The Editor: Hua Lu, University of Maryland Baltimore remaining paralogs behaved differently in SA perception, depending on the genetic back- County, UNITED STATES ground, and the expression of some of the genes induced by SA in an npr1 background was Received: April 26, 2018 affected by the presence of the paralogs.
    [Show full text]
  • A Novel Variant of FGFR3 Causes Proportionate Short Stature
    S G Kant and others FGFR3 and proportionate short 172:6 763–770 Clinical Study stature A novel variant of FGFR3 causes proportionate short stature Sarina G Kant1, Iveta Cervenkova2, Lukas Balek2, Lukas Trantirek3, Gijs W E Santen1, Martine C de Vries4, Hermine A van Duyvenvoorde1, Michiel J R van der Wielen1, Annemieke J M H Verkerk5, Andre´ G Uitterlinden5, Sabine E Hannema4, Jan M Wit4, Wilma Oostdijk4, Pavel Krejci2,6,* and Monique Losekoot1,* 1Department of Clinical Genetics, Leiden University Medical Center, PO Box 9600, 2300RC, Leiden, The Netherlands, 2Department of Biology, Faculty of Medicine and 3Central European Institute of Technology, Masaryk University, Brno, Czech Republic, 4Department of Pediatrics, Leiden University Medical Center, Leiden, The Netherlands, Correspondence 5Department of Internal Medicine, Erasmus Medical Center, Rotterdam, The Netherlands and 6Department of should be addressed Orthopaedic Surgery, David Geffen School of Medicine at UCLA, Los Angeles, California, USA to S G Kant *(P Krejci and M Losekoot contributed equally to this work) Email [email protected] Abstract Objective: Mutations of the fibroblast growth factor receptor 3 (FGFR3) cause various forms of short stature, of which the least severe phenotype is hypochondroplasia, mainly characterized by disproportionate short stature. Testing for an FGFR3 mutation is currently not part of routine diagnostic testing in children with short stature without disproportion. Design: A three-generation family A with dominantly transmitted proportionate short stature was studied by whole-exome sequencing to identify the causal gene mutation. Functional studies and protein modeling studies were performed to confirm the pathogenicity of the mutation found in FGFR3. We performed Sanger sequencing in a second family B with dominant proportionate short stature and identified a rare variant in FGFR3.
    [Show full text]
  • Mutations in C-Natriuretic Peptide (NPPC): a Novel Cause of Autosomal Dominant Short Stature
    © American College of Medical Genetics and Genomics ORIGINAL RESEARCH ARTICLE Mutations in C-natriuretic peptide (NPPC): a novel cause of autosomal dominant short stature Alfonso Hisado-Oliva, PhD1,2,3, Alba Ruzafa-Martin, MSc1, Lucia Sentchordi, MD, MSc1,3,4, Mariana F.A. Funari, MSc5, Carolina Bezanilla-López, MD6, Marta Alonso-Bernáldez, MSc1, Jimena Barraza-García, MD, MSc1,2,3, Maria Rodriguez-Zabala, MSc1, Antonio M. Lerario, MD, PhD7,8, Sara Benito-Sanz, PhD1,2,3, Miriam Aza-Carmona, PhD1,2,3, Angel Campos-Barros, PhD1,2, Alexander A.L. Jorge, MD, PhD5,7 and Karen E. Heath, PhD1,2,3 Purpose: C-type natriuretic peptide (CNP) and its principal receptor, reductions in cyclic guanosine monophosphate synthesis, confirming natriuretic peptide receptor B (NPR-B), have been shown to be their pathogenicity. Interestingly,onehasbeenpreviouslylinkedto important in skeletal development. CNP and NPR-B are encoded by skeletal abnormalities in the spontaneous Nppc mouse long-bone natriuretic peptide precursor-C (NPPC) and natriuretic peptide receptor abnormality (lbab)mutant. NPR2 NPR2 2( ) genes, respectively. While mutations have been Conclusions: Our results demonstrate, for the first time, that NPPC describedinpatientswithskeletaldysplasias and idiopathic short stature mutations cause autosomal dominant short stature in humans. The (ISS), and several Npr2 and Nppc skeletal dysplasia mouse models exist, NPPC NPPC mutations cosegregated with a short stature and small hands no mutations in have been described in patients to date. phenotype. A CNP analog, which is currently in clinical trials for the Methods: NPPC was screened in 668 patients (357 with dispro- treatment of achondroplasia, seems a promising therapeutic approach, portionate short stature and 311 with autosomal dominant ISS) and 29 since it directly replaces the defective protein.
    [Show full text]
  • Cldn19 Clic2 Clmp Cln3
    NewbornDx™ Advanced Sequencing Evaluation When time to diagnosis matters, the NewbornDx™ Advanced Sequencing Evaluation from Athena Diagnostics delivers rapid, 5- to 7-day results on a targeted 1,722-genes. A2ML1 ALAD ATM CAV1 CLDN19 CTNS DOCK7 ETFB FOXC2 GLUL HOXC13 JAK3 AAAS ALAS2 ATP1A2 CBL CLIC2 CTRC DOCK8 ETFDH FOXE1 GLYCTK HOXD13 JUP AARS2 ALDH18A1 ATP1A3 CBS CLMP CTSA DOK7 ETHE1 FOXE3 GM2A HPD KANK1 AASS ALDH1A2 ATP2B3 CC2D2A CLN3 CTSD DOLK EVC FOXF1 GMPPA HPGD K ANSL1 ABAT ALDH3A2 ATP5A1 CCDC103 CLN5 CTSK DPAGT1 EVC2 FOXG1 GMPPB HPRT1 KAT6B ABCA12 ALDH4A1 ATP5E CCDC114 CLN6 CUBN DPM1 EXOC4 FOXH1 GNA11 HPSE2 KCNA2 ABCA3 ALDH5A1 ATP6AP2 CCDC151 CLN8 CUL4B DPM2 EXOSC3 FOXI1 GNAI3 HRAS KCNB1 ABCA4 ALDH7A1 ATP6V0A2 CCDC22 CLP1 CUL7 DPM3 EXPH5 FOXL2 GNAO1 HSD17B10 KCND2 ABCB11 ALDOA ATP6V1B1 CCDC39 CLPB CXCR4 DPP6 EYA1 FOXP1 GNAS HSD17B4 KCNE1 ABCB4 ALDOB ATP7A CCDC40 CLPP CYB5R3 DPYD EZH2 FOXP2 GNE HSD3B2 KCNE2 ABCB6 ALG1 ATP8A2 CCDC65 CNNM2 CYC1 DPYS F10 FOXP3 GNMT HSD3B7 KCNH2 ABCB7 ALG11 ATP8B1 CCDC78 CNTN1 CYP11B1 DRC1 F11 FOXRED1 GNPAT HSPD1 KCNH5 ABCC2 ALG12 ATPAF2 CCDC8 CNTNAP1 CYP11B2 DSC2 F13A1 FRAS1 GNPTAB HSPG2 KCNJ10 ABCC8 ALG13 ATR CCDC88C CNTNAP2 CYP17A1 DSG1 F13B FREM1 GNPTG HUWE1 KCNJ11 ABCC9 ALG14 ATRX CCND2 COA5 CYP1B1 DSP F2 FREM2 GNS HYDIN KCNJ13 ABCD3 ALG2 AUH CCNO COG1 CYP24A1 DST F5 FRMD7 GORAB HYLS1 KCNJ2 ABCD4 ALG3 B3GALNT2 CCS COG4 CYP26C1 DSTYK F7 FTCD GP1BA IBA57 KCNJ5 ABHD5 ALG6 B3GAT3 CCT5 COG5 CYP27A1 DTNA F8 FTO GP1BB ICK KCNJ8 ACAD8 ALG8 B3GLCT CD151 COG6 CYP27B1 DUOX2 F9 FUCA1 GP6 ICOS KCNK3 ACAD9 ALG9
    [Show full text]
  • Regulation of the Natriuretic Peptide Receptor 2 (Npr2) by Phosphorylation of Juxtamembrane Serine and Threonine Residues Is
    This Accepted Manuscript has not been copyedited and formatted. The final version may differ from this version. Research Articles: Development/Plasticity/Repair Regulation of the natriuretic peptide receptor 2 (Npr2) by phosphorylation of juxtamembrane serine and threonine residues is essential for bifurcation of sensory axons Hannes Schmidt1,2, Deborah M. Dickey3, Alexandre Dumoulin1,4, Marie Octave2, Jerid W. Robinson3, Ralf Kühn1, Robert Feil2, Lincoln R. Potter3 and Fritz G. Rathjen1 1Max Delbrück Center for Molecular Medicine, Robert-Rössle-Str. 10, 13092 Berlin, Germany 2Interfaculty Institute of Biochemistry, University of Tübingen, Hoppe-Seyler-Str. 4, 72076 Tübingen, Germany 3Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, Medical School, 6-155 Jackson Hall, 321 Church St., Minneapolis, MN 55455, USA 4Berlin Institute of Health, Anna-Louisa-Karsch-Str. 2, 10178 Berlin, Germany DOI: 10.1523/JNEUROSCI.0495-18.2018 Received: 8 February 2018 Revised: 28 August 2018 Accepted: 18 September 2018 Published: 24 September 2018 Author contributions: H.S., D.M.D., R.K., R.F., L.P., and F.G.R. designed research; H.S., D.M.D., A.D., M.O., J.R., R.K., and F.G.R. performed research; H.S., D.M.D., A.D., M.O., J.R., R.K., R.F., L.P., and F.G.R. analyzed data; H.S., R.F., L.P., and F.G.R. edited the paper; H.S. and F.G.R. wrote the paper; L.P. and F.G.R. wrote the first draft of the paper. Conflict of Interest: The authors declare no competing financial interests.
    [Show full text]
  • Dephosphorylation of the NPR2 Guanylyl Cyclase Contributes to Inhibition of Bone Growth by Fibroblast Growth Factor
    bioRxiv preprint first posted online Sep. 25, 2017; doi: http://dx.doi.org/10.1101/193847. The copyright holder for this preprint (which was not peer-reviewed) is the author/funder. It is made available under a CC-BY-NC-ND 4.0 International license. Dephosphorylation of the NPR2 guanylyl cyclase contributes to inhibition of bone growth by fibroblast growth factor Leia C. Shuhaibar1*, Jerid W. Robinson2, Ninna P. Shuhaibar1, Jeremy R. Egbert1, Giulia Vigone1, Valentina Baena1, Deborah Kaback1, Siu-Pok Yee1, Robert Feil3, Melanie C. Fisher4, Caroline N. Dealy4, Lincoln R. Potter2*, Laurinda A. Jaffe1* 1Department of Cell Biology and 4Center for Regenerative Medicine and Skeletal Development, University of Connecticut Health Center, Farmington CT USA, 2Department of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota, Minneapolis MN USA, and 3Interfakultäres Institut für Biochemie, University of Tübingen, 72076 Tübingen, Germany *For correspondence: [email protected] (LCS); [email protected] (LRP); [email protected] (LAJ) Abstract Activating mutations in fibroblast growth factor (FGF) receptor 3 and inactivating mutations in the NPR2 guanylyl cyclase cause similar forms of dwarfism, but how these two signaling systems interact to regulate bone growth is poorly understood. Here, by use of a mouse model in which NPR2 cannot be dephosphorylated, we show that bone elongation is opposed when NPR2 is dephosphorylated and thus produces less cyclic GMP. By developing an in vivo imaging system to measure cyclic GMP levels in intact tibia, we show that FGF-induced dephosphorylation of NPR2 decreases its guanylyl cyclase activity in growth plate chondrocytes in living bone. Thus FGF signaling lowers cyclic GMP in the growth plate, which counteracts bone elongation.
    [Show full text]
  • Regulation of the Natriuretic Peptide Receptor 2 (Npr2) By
    9768 • The Journal of Neuroscience, November 7, 2018 • 38(45):9768–9780 Development/Plasticity/Repair Regulation of the Natriuretic Peptide Receptor 2 (Npr2) by Phosphorylation of Juxtamembrane Serine and Threonine Residues Is Essential for Bifurcation of Sensory Axons Hannes Schmidt,1,2 Deborah M. Dickey,3 XAlexandre Dumoulin,1 Marie Octave,2 Jerid W. Robinson,3 Ralf Ku¨hn,1,4 Robert Feil,2 Lincoln R. Potter,3 and XFritz G. Rathjen1 1Max Delbru¨ck Center for Molecular Medicine, 13092 Berlin, Germany, 2Interfaculty Institute of Biochemistry, University of Tu¨bingen, 72076 Tu¨bingen, Germany, 3Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota Medical School, Minneapolis, Minnesota 55455, and 4Berlin Institute of Health, 10178 Berlin, Germany cGMP signaling elicited by activation of the transmembrane receptor guanylyl cyclase Npr2 (also known as guanylyl cyclase B) by the ligand CNP controls sensory axon bifurcation of DRG and cranial sensory ganglion (CSG) neurons entering the spinal cord or hindbrain, respectively. Previous studies have shown that Npr2 is phosphorylated on serine and threonine residues in its kinase homology domain (KHD). However, it is unknown whether phosphorylation of Npr2 is essential for axon bifurcation. Here, we generated a knock-in mouse line in which the seven regulatory serine and threonine residues in the KHD of Npr2 were substituted by alanine (Npr2-7A), resulting in a nonphosphorylatable enzyme. Real-time imaging of cGMP in DRG neurons with a genetically encoded fluorescent cGMP sensor or biochemical analysis of guanylyl cyclase activity in brain or lung tissue revealed the absence of CNP-induced cGMP generation in the Npr27A/7A mutant.
    [Show full text]
  • (12) United States Patent (10) Patent No.: US 8,741,861 B2 Mann (45) Date of Patent: Jun
    USOO8741861 B2 (12) United States Patent (10) Patent No.: US 8,741,861 B2 Mann (45) Date of Patent: Jun. 3, 2014 (54) METHODS OF NOVEL THERAPEUTIC McLaughlin et al. Pulmonary arterial hypertension, 2006, Circula CANDDATE DENTIFICATION THROUGH tion, 1.14:1417-1431).* GENE EXPRESSION ANALYSIS IN Vidal et al. Making sense of antisense, 2005, European Journal of VASCULAR-RELATED DISEASES Cancer, 41:2812-18.* Barst et al. Diagnosis and Differential Assessment of pulmonary (75) Inventor: David M. Mann, San Diego, CA (US) arterial hypertension, 2004, Journal of the American College of Car diology, vol.43, No. 12, Supplement S. p. 40S-47S.* (73) Assignee: Vascular Biosciences, San Diego, CA Esau et al., WO 2005/013901 A2, only pp. 1-250 are included.* (US) Chan and Loscalzo, “Pathogenic Mechanisms of Pulmonary Arterial Hypertension.” (2007) Journal of Molecular and Cellular Cardiology (*) Notice: Subject to any disclaimer, the term of this 44:14-30. patent is extended or adjusted under 35 Geracietal., “Gene Expression Patterns in the Lungs of Patients with U.S.C. 154(b) by 177 days. Primary Pulmonary Hypertension: A Gene Microarray Analysis.” (2001) Circulation Research 88:555-562. (21) Appl. No.: 12/934,950 Giaid and Saleh, “Reduced Expression of Endothelial Nitric Oxide Synthase in the Lungs of Patients with Pulmonary Hypertension.” (22) PCT Filed: Mar. 27, 2009 (1995) New England Journal of Medicine 333:214-221. Hoshikawa et al., “Hypoxia Induces Different Genes in the Lungs of (86). PCT No.: PCT/US2O09/038685 Rats Compared with Mice.” (2003) Physiological Genomics 12:209 219. S371 (c)(1), Kwapiszewska et al., “Expression Profiling of Laser-Microdissected (2), (4) Date: Dec.
    [Show full text]
  • (12) Patent Application Publication (10) Pub. No.: US 2003/0198970 A1 Roberts (43) Pub
    US 2003O19897OA1 (19) United States (12) Patent Application Publication (10) Pub. No.: US 2003/0198970 A1 Roberts (43) Pub. Date: Oct. 23, 2003 (54) GENOSTICS clinical trials on groups or cohorts of patients. This group data is used to derive a Standardised method of treatment (75) Inventor: Gareth Wyn Roberts, Cambs (GB) which is Subsequently applied on an individual basis. There is considerable evidence that a significant factor underlying Correspondence Address: the individual variability in response to disease, therapy and FINNEGAN, HENDERSON, FARABOW, prognosis lies in a person's genetic make-up. There have GARRETT & DUNNER been numerous examples relating that polymorphisms LLP within a given gene can alter the functionality of the protein 1300 ISTREET, NW encoded by that gene thus leading to a variable physiological WASHINGTON, DC 20005 (US) response. In order to bring about the integration of genomics into medical practice and enable design and building of a (73) Assignee: GENOSTIC PHARMA LIMITED technology platform which will enable the everyday practice (21) Appl. No.: 10/206,568 of molecular medicine a way must be invented for the DNA Sequence data to be aligned with the identification of genes (22) Filed: Jul. 29, 2002 central to the induction, development, progression and out come of disease or physiological States of interest. Accord Related U.S. Application Data ing to the invention, the number of genes and their configu rations (mutations and polymorphisms) needed to be (63) Continuation of application No. 09/325,123, filed on identified in order to provide critical clinical information Jun. 3, 1999, now abandoned. concerning individual prognosis is considerably less than the 100,000 thought to comprise the human genome.
    [Show full text]
  • C-Type Natriuretic Peptide (CNP) Is a Bifurcation Factor for Sensory Neurons
    C-type natriuretic peptide (CNP) is a bifurcation factor for sensory neurons Hannes Schmidta, Agne Stonkutea, Rene´ Ju¨ ttnera, Doris Koeslingb, Andreas Friebeb,1, and Fritz G. Rathjena,2 aDepartment of Developmental Neurobiology, Max Delbru¨ck Center for Molecular Medicine, Robert Ro¨ssle Strasse 10, D-13092 Berlin, Germany; and bInstitute for Pharmacology and Toxicology, Ruhr University Bochum, D-44780 Bochum, Germany Edited by Cornelia I. Bargmann, The Rockefeller University, New York, NY, and approved August 6, 2009 (received for review June 12, 2009) Neuronal circuits are shaped during development by the coordi- that is expressed in the dorsal horn of the embryonic spinal cord nated action of guidance factors and signals that regulate axonal as a ligand that induces bifurcation of ingrowing sensory axons branching. Unlike guidance cues, the molecules and signaling via its receptor Npr2. cascades that underlie axonal branching remain to be resolved. Here we show that the secreted molecule C-type natriuretic pep- Results tide (CNP) induces a cGMP signaling cascade via its receptor Expression of CNP in the Dorsal Spinal Cord During the Ingrowth of particulate guanylyl cyclase Npr2 which is essential for sensory Sensory Neurons. Preferential activation of Npr2 occurs via the axon bifurcation at the dorsal root entry zone (DREZ) of the spinal natriuretic peptide ligands (CNPϾϾANPϾϾBNP) (23) or weakly cord. In contrast, another form of sensory axon branching— via the small GTPase Rac and the p21-activated kinase pathway collateral formation—is not affected by this pathway. We also (24). To identify factor(s) responsible for sensory axon bifurca- demonstrate that cGMP signaling via the nitric oxide-stimulated tion at the DREZ via activation of guanylyl cyclase Npr2 we soluble guanylyl cyclase system (NO-GC) is dispensable for sensory concentrated on natriuretic peptides.
    [Show full text]
  • Dephosphorylation of the NPR2 Guanylyl Cyclase Contributes To
    RESEARCH ARTICLE Dephosphorylation of the NPR2 guanylyl cyclase contributes to inhibition of bone growth by fibroblast growth factor Leia C Shuhaibar1*, Jerid W Robinson2†, Giulia Vigone1†, Ninna P Shuhaibar1, Jeremy R Egbert1, Valentina Baena1, Tracy F Uliasz1, Deborah Kaback1, Siu-Pok Yee1, Robert Feil3, Melanie C Fisher4, Caroline N Dealy4, Lincoln R Potter2*, Laurinda A Jaffe1* 1Department of Cell Biology, University of Connecticut Health Center, Farmington, United States; 2Department of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota, Minneapolis, United States; 3Interfakulta¨ res Institut fu¨ r Biochemie, University of Tu¨ bingen, Tu¨ bingen, Germany; 4Center for Regenerative Medicine and Skeletal Development, University of Connecticut Health Center, Farmington, United States Abstract Activating mutations in fibroblast growth factor (FGF) receptor 3 and inactivating mutations in the NPR2 guanylyl cyclase both cause severe short stature, but how these two signaling systems interact to regulate bone growth is poorly understood. Here, we show that bone elongation is increased when NPR2 cannot be dephosphorylated and thus produces more cyclic GMP. By developing an in vivo imaging system to measure cyclic GMP production in intact tibia, we show that FGF-induced dephosphorylation of NPR2 decreases its guanylyl cyclase activity in *For correspondence: growth plate chondrocytes in living bone. The dephosphorylation requires a PPP-family [email protected] (LCS); phosphatase. Thus FGF signaling lowers cyclic GMP production in the growth plate, which [email protected] (LRP); counteracts bone elongation. These results define a new component of the signaling network by [email protected] (LAJ) which activating mutations in the FGF receptor inhibit bone growth. †These authors contributed DOI: https://doi.org/10.7554/eLife.31343.001 equally to this work Competing interests: The authors declare that no Introduction competing interests exist.
    [Show full text]
  • Dephosphorylation of the NPR2 Guanylyl Cyclase Contributes to Inhibition of Bone Growth by Fibroblast Growth Factor
    bioRxiv preprint doi: https://doi.org/10.1101/193847; this version posted September 28, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Dephosphorylation of the NPR2 guanylyl cyclase contributes to inhibition of bone growth by fibroblast growth factor Leia C. Shuhaibar1*, Jerid W. Robinson2, Ninna P. Shuhaibar1, Jeremy R. Egbert1, Giulia Vigone1, Valentina Baena1, Deborah Kaback1, Siu-Pok Yee1, Robert Feil3, Melanie C. Fisher4, Caroline N. Dealy4, Lincoln R. Potter2*, Laurinda A. Jaffe1* 1Department of Cell Biology and 4Center for Regenerative Medicine and Skeletal Development, University of Connecticut Health Center, Farmington CT USA, 2Department of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota, Minneapolis MN USA, and 3Interfakultäres Institut für Biochemie, University of Tübingen, 72076 Tübingen, Germany *For correspondence: [email protected] (LCS); [email protected] (LRP); [email protected] (LAJ) Abstract Activating mutations in fibroblast growth factor (FGF) receptor 3 and inactivating mutations in the NPR2 guanylyl cyclase cause similar forms of dwarfism, but how these two signaling systems interact to regulate bone growth is poorly understood. Here, by use of a mouse model in which NPR2 cannot be dephosphorylated, we show that bone elongation is opposed when NPR2 is dephosphorylated and thus produces less cyclic GMP. By developing an in vivo imaging system to measure cyclic GMP levels in intact tibia, we show that FGF-induced dephosphorylation of NPR2 decreases its guanylyl cyclase activity in growth plate chondrocytes in living bone.
    [Show full text]