Table 1. List of Vegetation Communities and Microsites Sampled in 1984 and 1985
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ITS Secondary Structure Reconstruction to Resolve Taxonomy and Phylogeny of the Betula L
ITS secondary structure reconstruction to resolve taxonomy and phylogeny of the Betula L. genus Andrii S. Tarieiev1, Oliver Gailing1,2 and Konstantin V. Krutovsky1,2,3,4,5 1 Department of Forest Genetics and Forest Tree Breeding, Georg-August University of Göttingen, Göttingen, Germany 2 Center for Integrated Breeding Research, Georg-August University of Göttingen, Göttingen, Germany 3 Laboratory of Forest Genomics, Genome Research and Education Center, Institute of Fundamental Biology and Biotechnology, Siberian Federal University, Krasnoyarsk, Russia 4 Laboratory of Population Genetics, N.I. Vavilov Institute of General Genetics, Russian Academy of Sciences, Moscow, Russia 5 Department of Ecosystem Science and Management, Texas A&M University, College Station, TX, United States of America ABSTRACT The taxonomy and phylogeny of the Betula L. genus remain unresolved and are very difficult to assess due to several factors, especially because of frequent hybridization among different species. In the current study, we used nucleotide sequences of two internal transcribed spacer regions (ITS1 and ITS2), which are commonly used as phylogenetic markers. In addition to their nucleotide variation we reconstructed their secondary structure and used it to resolve phylogenetic relationships of some birch species. We explored whether consideration of secondary structure in phylogenetic analyses based on neighbor-joining, maximum parsimony, maximum likelihood, and Bayesian inference methods would help us obtain more solid support of the reconstructed phylogenetic trees. The results were not unambiguous. There were only a few clades with higher support when secondary structure was included into analysis. The phylogenetic trees generated using different methods were mostly in agreement Submitted 16 October 2020 with each other. -
Molecular Phylogeny of Chinese Thuidiaceae with Emphasis on Thuidium and Pelekium
Molecular Phylogeny of Chinese Thuidiaceae with emphasis on Thuidium and Pelekium QI-YING, CAI1, 2, BI-CAI, GUAN2, GANG, GE2, YAN-MING, FANG 1 1 College of Biology and the Environment, Nanjing Forestry University, Nanjing 210037, China. 2 College of Life Science, Nanchang University, 330031 Nanchang, China. E-mail: [email protected] Abstract We present molecular phylogenetic investigation of Thuidiaceae, especially on Thudium and Pelekium. Three chloroplast sequences (trnL-F, rps4, and atpB-rbcL) and one nuclear sequence (ITS) were analyzed. Data partitions were analyzed separately and in combination by employing MP (maximum parsimony) and Bayesian methods. The influence of data conflict in combined analyses was further explored by two methods: the incongruence length difference (ILD) test and the partition addition bootstrap alteration approach (PABA). Based on the results, ITS 1& 2 had crucial effect in phylogenetic reconstruction in this study, and more chloroplast sequences should be combinated into the analyses since their stability for reconstructing within genus of pleurocarpous mosses. We supported that Helodiaceae including Actinothuidium, Bryochenea, and Helodium still attributed to Thuidiaceae, and the monophyletic Thuidiaceae s. lat. should also include several genera (or species) from Leskeaceae such as Haplocladium and Leskea. In the Thuidiaceae, Thuidium and Pelekium were resolved as two monophyletic groups separately. The results from molecular phylogeny were supported by the crucial morphological characters in Thuidiaceae s. lat., Thuidium and Pelekium. Key words: Thuidiaceae, Thuidium, Pelekium, molecular phylogeny, cpDNA, ITS, PABA approach Introduction Pleurocarpous mosses consist of around 5000 species that are defined by the presence of lateral perichaetia along the gametophyte stems. Monophyletic pleurocarpous mosses were resolved as three orders: Ptychomniales, Hypnales, and Hookeriales (Shaw et al. -
Genetic Variation in the Clonal Bryophyte Hylocomium Splendens at Hierarchical Geographical Scales in Scandinavia
Heredity 78 (1997) 293-301 Received 26 April 1996 Genetic variation in the clonal bryophyte Hylocomium splendens at hierarchical geographical scales in Scandinavia NILS CRONBERG*t, ULF MOLAU:j: & MATS SONESSON§ tDepartment of Systematic Botany, University of Lund, 6. Val/gatan 18-20, S-223 61 Lund, tDepartment of Systematic Botany, University of Goteborg, Carl Skottsbergs Gata 22, S-413 19 Goteborg and §Abisko Scientific Research Station, The Royal Swedish Academy of Sciences, S-981 07 Abisko, Sweden The widespread bryophyte Hylocomium splendens was sampled in a hierarchical fashion from populations representing four Scandinavian vegetation zones. Allozyme electrophoresis revealed variation at 11 out of 13 screened loci, allowing accurate identification of genotypes. From a total sample of 298 shoots 79 genotypes could be detected, giving the proportion of distinguishable genotypes (PD) of 0.265. The total allelic diversity (HT) based on polymorphic loci was 0.274. The relative differentiation among populations was low (GsT = 0.073), indicating a high level of gene flow. Differences in population structuring occurred between a subarctic alpine site vs. three lowland sites. The subarctic-alpine population had one widespread clone, which appeared to be propagated by dispersal of vegetative fragments. That population also comprised many rare genotypes, often occurring together within 10 x 10 cm patches. The lowland populations had genotypes that were locally common and often dominant within the patches. When identical genotypes were observed in multiple patches within these populations, it was usually statistically highly probable that they had arisen by independent sexual recombinations. Keywords: allozyme, Bryophyta, clonal plant, genetic diversity, hierarchical variation, Hy/oco mium splendens. -
Volume 1, Chapter 2-7: Bryophyta
Glime, J. M. 2017. Bryophyta – Bryopsida. Chapt. 2-7. In: Glime, J. M. Bryophyte Ecology. Volume 1. Physiological Ecology. Ebook 2-7-1 sponsored by Michigan Technological University and the International Association of Bryologists. Last updated 10 January 2019 and available at <http://digitalcommons.mtu.edu/bryophyte-ecology/>. CHAPTER 2-7 BRYOPHYTA – BRYOPSIDA TABLE OF CONTENTS Bryopsida Definition........................................................................................................................................... 2-7-2 Chromosome Numbers........................................................................................................................................ 2-7-3 Spore Production and Protonemata ..................................................................................................................... 2-7-3 Gametophyte Buds.............................................................................................................................................. 2-7-4 Gametophores ..................................................................................................................................................... 2-7-4 Location of Sex Organs....................................................................................................................................... 2-7-6 Sperm Dispersal .................................................................................................................................................. 2-7-7 Release of Sperm from the Antheridium..................................................................................................... -
Introgression in Betula Species of Different Ploidy Levels and the Analysis of the Betula Nana Genome
Introgression in Betula Species of Different Ploidy Levels and the Analysis of the Betula nana Genome JASMIN ZOHREN School of Biological and Chemical Sciences Queen Mary University of London Mile End Road London E1 4NS Supervisors: Dr Richard J. A. Buggs Prof Richard A. Nichols November 2016 Submitted in partial fulfilment of the requirements of the Degree of Doctor of Philosophy 1 Statement of Originality I, Jasmin Zohren, confirm that the research included within this thesis is my own work or that where it has been carried out in collaboration with, or supported by others, that this is duly acknowledged below and my contribution indicated. Previously published material is also acknowledged below. I attest that I have exercised reasonable care to ensure that the work is original, and does not to the best of my knowledge break any UK law, infringe any third party’s copyright or other Intellectual Property Right, or contain any confidential material. I accept that the College has the right to use plagiarism detection software to check the electronic version of the thesis. I confirm that this thesis has not been previously submitted for the award of a degree by this or any other university. The copyright of this thesis rests with the author and no quotation from it or information derived from it may be published without the prior written consent of the author. Signature: Date: Details of collaboration and publications Chapter 2 is published in Zohren et al. (2016): Zohren J, Wang N, Kardailsky I, Borrell JS, Joecker A, Nichols RA, Buggs RJA (2016). -
Kenai National Wildlife Refuge Species List, Version 2018-07-24
Kenai National Wildlife Refuge Species List, version 2018-07-24 Kenai National Wildlife Refuge biology staff July 24, 2018 2 Cover image: map of 16,213 georeferenced occurrence records included in the checklist. Contents Contents 3 Introduction 5 Purpose............................................................ 5 About the list......................................................... 5 Acknowledgments....................................................... 5 Native species 7 Vertebrates .......................................................... 7 Invertebrates ......................................................... 55 Vascular Plants........................................................ 91 Bryophytes ..........................................................164 Other Plants .........................................................171 Chromista...........................................................171 Fungi .............................................................173 Protozoans ..........................................................186 Non-native species 187 Vertebrates ..........................................................187 Invertebrates .........................................................187 Vascular Plants........................................................190 Extirpated species 207 Vertebrates ..........................................................207 Vascular Plants........................................................207 Change log 211 References 213 Index 215 3 Introduction Purpose to avoid implying -
<I>Sphagnum</I> Peat Mosses
ORIGINAL ARTICLE doi:10.1111/evo.12547 Evolution of niche preference in Sphagnum peat mosses Matthew G. Johnson,1,2,3 Gustaf Granath,4,5,6 Teemu Tahvanainen, 7 Remy Pouliot,8 Hans K. Stenøien,9 Line Rochefort,8 Hakan˚ Rydin,4 and A. Jonathan Shaw1 1Department of Biology, Duke University, Durham, North Carolina 27708 2Current Address: Chicago Botanic Garden, 1000 Lake Cook Road Glencoe, Illinois 60022 3E-mail: [email protected] 4Department of Plant Ecology and Evolution, Evolutionary Biology Centre, Uppsala University, Norbyvagen¨ 18D, SE-752 36, Uppsala, Sweden 5School of Geography and Earth Sciences, McMaster University, Hamilton, Ontario, Canada 6Department of Aquatic Sciences and Assessment, Swedish University of Agricultural Sciences, SE-750 07, Uppsala, Sweden 7Department of Biology, University of Eastern Finland, P.O. Box 111, 80101, Joensuu, Finland 8Department of Plant Sciences and Northern Research Center (CEN), Laval University Quebec, Canada 9Department of Natural History, Norwegian University of Science and Technology University Museum, Trondheim, Norway Received March 26, 2014 Accepted September 23, 2014 Peat mosses (Sphagnum)areecosystemengineers—speciesinborealpeatlandssimultaneouslycreateandinhabitnarrowhabitat preferences along two microhabitat gradients: an ionic gradient and a hydrological hummock–hollow gradient. In this article, we demonstrate the connections between microhabitat preference and phylogeny in Sphagnum.Usingadatasetof39speciesof Sphagnum,withan18-locusDNAalignmentandanecologicaldatasetencompassingthreelargepublishedstudies,wetested -
Betula Nana L
Scientific name: Betula nana L. Family: Betulaceae Common names: bog birch, arctic dwarf birch, swamp birch Plant Description nutrient poor soil, but has no tolerance to salinity A perennial, deciduous shrub, spreading or ascending (USDA NRCS n.d.). to 3 m in height; bark, dark brown, smooth, close; Distribution: 0 to 3,400 m (Tollefson 2007). lenticels pale, inconspicuous, unexpanded; twigs Alberta, British Columbia, Manitoba, New covered with large, warty, resinous glands; leaf blade Brunswick, Newfoundland., Northwest Territories, is leathery, egg shaped to nearly circular with 2 to Nova Scotia, Ontario, Prince Edward Island, Quebec, 6 pairs of lateral veins, 0.5 to 3 × 1 to 2.5 cm, teeth Saskatchewan, Yukon; Alaska, California, Colorado, obtuse to rounded, surfaces, often covered with Idaho, Maine, Mont., New Hampshire, New York, resinous glands; flowers are monoecious; preformed Oregon, South Dakota, Utah, Washington, Wyoming male catkins are 2.5 to 5 cm long, pendant, and (eFloras n.d.). become much longer and yellow-green as they open Alaska, Yukon to southern Baffin Island south to in mid-spring; females are upright, 2.5 to 5 cm long, California, Nevada, Colorado, central Saskatchewan, and reddish green in color (eFloras n.d.). central Manitoba, Great Lakes, Newfoundland (Moss Seed: Samaras with wings narrower than body, 1983). broadest near summit, extended slightly beyond body apically (eFloras n.d.). Phenology Leaves appear in April to May (TLF 2012). Flowers from June to August, fruit ripens August to Betula nana catkins Habitat and Distribution Habitat: Arctic and alpine tundra, acidic rocky slopes and barrens, muskegs, peat bogs, stream banks, open subalpine summits. -
Glossary of Landscape and Vegetation Ecology for Alaska
U. S. Department of the Interior BLM-Alaska Technical Report to Bureau of Land Management BLM/AK/TR-84/1 O December' 1984 reprinted October.·2001 Alaska State Office 222 West 7th Avenue, #13 Anchorage, Alaska 99513 Glossary of Landscape and Vegetation Ecology for Alaska Herman W. Gabriel and Stephen S. Talbot The Authors HERMAN w. GABRIEL is an ecologist with the USDI Bureau of Land Management, Alaska State Office in Anchorage, Alaskao He holds a B.S. degree from Virginia Polytechnic Institute and a Ph.D from the University of Montanao From 1956 to 1961 he was a forest inventory specialist with the USDA Forest Service, Intermountain Regiono In 1966-67 he served as an inventory expert with UN-FAO in Ecuador. Dra Gabriel moved to Alaska in 1971 where his interest in the description and classification of vegetation has continued. STEPHEN Sa TALBOT was, when work began on this glossary, an ecologist with the USDI Bureau of Land Management, Alaska State Office. He holds a B.A. degree from Bates College, an M.Ao from the University of Massachusetts, and a Ph.D from the University of Alberta. His experience with northern vegetation includes three years as a research scientist with the Canadian Forestry Service in the Northwest Territories before moving to Alaska in 1978 as a botanist with the U.S. Army Corps of Engineers. or. Talbot is now a general biologist with the USDI Fish and Wildlife Service, Refuge Division, Anchorage, where he is conducting baseline studies of the vegetation of national wildlife refuges. ' . Glossary of Landscape and Vegetation Ecology for Alaska Herman W. -
Pdf of Article
ORIGINAL ARTICLE Rec. Nat. Prod . 9:1 (2015) 41-48 Content and Dynamics of Polyphenols in Betula spp. Leaves Naturally Growing in Estonia Ain Raal 1∗∗∗, Tatjana Boikova 1 and Tõnu Püssa 2 1Department of Pharmacy, University of Tartu, Nooruse 1, Tartu 50411, Estonia 2Department of Food Hygiene, Estonian University of Life Sciences, Kreutzwaldi 58A, Tartu 51014, Estonia (Received November 15, 2013; Revised November 15, 2013; Accepted July 8, 2014) Abstract: The seasonal variation in the chemical composition and chemosystematics of the leaves of Betula pendula Roth. , B. pubescens Ehrh. , B. humilis Schrank and B. nana L. ( Betulaceae ), growing naturally in Estonia, and in B. pendula buds was studied. Polyphenols were analyzed by HPLC and HPLC-MS/MS. Hyperoside (423-3724 µg/g), myricetin glucuronide (106-1696 µg/g), quercetin glucuronide (206-1435 µg/g), myricetin glucoside (89-1197 µg/g), quercitrin (53-578 µg/g), and kaempferol glucuronide (77-342 µg/g) were found to be the main flavonoids in the birch leaves studied. The content of flavonoids in buds was lower than in leaves. The moderate correlations between the contents of the main polyphenols in the compared birch species were determined: B. pendula showed correlations with B. pubescens and with B. humilis . The seasonal variation of polyphenols was specific for each birch species, and no general tendency was observed. The presence of coumaric acid O-hexoside is not typical to B. nana and the content of some polyphenols can indicate the collecting time of plant material. Keywords: Betula pendula; Betula pubescens; Betula humilis; Betula nana; polyphenols. © 2015 ACG Publications. -
(Limpr.) Warnst
ISSN 2336-3193 Acta Mus. Siles. Sci. Natur., 68: 123-134, 2019 DOI: 10.2478/cszma-2019-0012 Published: online 1 July 2019, print July 2019 On moss genera Hylocomiadelphus Ochyra & Stebel and Rhytidiadelphus (Limpr.) Warnst. Michael S. Ignatov, Elena A. Ignatova, Oxana I. Kuznetsova & Vladimir E. Fedosov On moss genera Hylocomiadelphus Ochyra & Stebel and Rhytidiadelphus (Limpr.) Warnst. – Acta Mus. Siles. Sci. Natur., 68: 123-134, 2019. Abstract: The moss family Hylocomiaceae is studied for the generic level taxonomy within a molecular phylogenetic approach. We confirm segregating of the species formerly known as Rhytidiadelphus triquetrus to Hylocomiadelphus Ochyra & Stebel from the genus Rhytidiadelphus . Hylocomiadelphus forms a clade with Loeskeobryum and Meteoriella , sharing with both genera cordate to auriculate leaf bases and non-squarrose leaves, and with the former undulate leaves and reticulate exostome teeth ornamentation. However, Loeskeobryum differs from Hylocomiadelphus in having paraphyllia, while Meteoriella has a straight capsule and reduced peristome, likely caused by its epiphytic ecology. In the group of species closely related to R. squarrosus , in addition to R. subpinnatus , the third species with North Pacific distribution is described as R. pacificum . Macrothamnium is found deeply nested in Rhytidiadelphus , although no nomenclatural implications are suggested at the moment due to insufficient sampling. Hylocomium splendens var. splendens and var. obtusifolium were found intermingled in the phylogenetic tree, indicating no correlation between morphology and variation in ITS region, thus supporting a view that these taxa are merely environmentally induced morphs. Key words: bryophytes, Rhytidiadelphus , Hylocomiadelphus , Hylocomium , Hylocomiaceae, taxono- my, molecular phylogeny, phytogeography, new species, new genera, nomenclature Introduction Despite that the moss family Hylocomiaceae M. -
Combined Effects of Simulated Browsing, Warming and Nutrient
Polar Biology (2019) 42:1561–1570 https://doi.org/10.1007/s00300-019-02543-y ORIGINAL PAPER Combined efects of simulated browsing, warming and nutrient addition on forage availability for migratory caribou in Nunavik, Canada Valérie Saucier1 · Emilie Champagne1,2 · Steeve D. Côté1 · Jean‑Pierre Tremblay1,2 Received: 23 July 2018 / Revised: 29 May 2019 / Accepted: 9 July 2019 / Published online: 30 July 2019 © Springer-Verlag GmbH Germany, part of Springer Nature 2019 Abstract At high population size, migratory caribou (Rangifer tarandus) are regulated by forage abundance in their summer range. Climate warming likely afects forage availability by increasing productivity and advancing phenology of vegetation. Our objective was to investigate the combined efects of browsing and climate warming on the availability of dwarf birch (Betula glandulosa). We simulated direct (warming, with open-top chambers) and indirect (increased nutrient cycling) efects of climate warming in interaction with simulated browsing (leaf stripping) from 2009 to 2013 in Nunavik, Canada. We meas- ured the efect of treatments on dwarf birch biomass and phenology. Moderate and heavy browsing reduced the estimated biomass of birch leaves by 14% and 34%, respectively. Fertilization did not increase the biomass of birch leaves, but increased the biomass of another forage, Poaceae. The warming treatment advanced the opening of birch leaves by 4 days (95% CI: [3, 6]) in 2011 and 7 [5, 8] days in 2013, the two years colder than average. The absence of signifcant phenological shifts in warmed plots during warmer springs suggests that established dwarf birches may have reached a threshold in a limiting resource, likely soil moisture, under which they cannot respond to further warming.