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ITS Secondary Structure Reconstruction to Resolve Taxonomy and Phylogeny of the Betula L
ITS secondary structure reconstruction to resolve taxonomy and phylogeny of the Betula L. genus Andrii S. Tarieiev1, Oliver Gailing1,2 and Konstantin V. Krutovsky1,2,3,4,5 1 Department of Forest Genetics and Forest Tree Breeding, Georg-August University of Göttingen, Göttingen, Germany 2 Center for Integrated Breeding Research, Georg-August University of Göttingen, Göttingen, Germany 3 Laboratory of Forest Genomics, Genome Research and Education Center, Institute of Fundamental Biology and Biotechnology, Siberian Federal University, Krasnoyarsk, Russia 4 Laboratory of Population Genetics, N.I. Vavilov Institute of General Genetics, Russian Academy of Sciences, Moscow, Russia 5 Department of Ecosystem Science and Management, Texas A&M University, College Station, TX, United States of America ABSTRACT The taxonomy and phylogeny of the Betula L. genus remain unresolved and are very difficult to assess due to several factors, especially because of frequent hybridization among different species. In the current study, we used nucleotide sequences of two internal transcribed spacer regions (ITS1 and ITS2), which are commonly used as phylogenetic markers. In addition to their nucleotide variation we reconstructed their secondary structure and used it to resolve phylogenetic relationships of some birch species. We explored whether consideration of secondary structure in phylogenetic analyses based on neighbor-joining, maximum parsimony, maximum likelihood, and Bayesian inference methods would help us obtain more solid support of the reconstructed phylogenetic trees. The results were not unambiguous. There were only a few clades with higher support when secondary structure was included into analysis. The phylogenetic trees generated using different methods were mostly in agreement Submitted 16 October 2020 with each other. -
Introgression in Betula Species of Different Ploidy Levels and the Analysis of the Betula Nana Genome
Introgression in Betula Species of Different Ploidy Levels and the Analysis of the Betula nana Genome JASMIN ZOHREN School of Biological and Chemical Sciences Queen Mary University of London Mile End Road London E1 4NS Supervisors: Dr Richard J. A. Buggs Prof Richard A. Nichols November 2016 Submitted in partial fulfilment of the requirements of the Degree of Doctor of Philosophy 1 Statement of Originality I, Jasmin Zohren, confirm that the research included within this thesis is my own work or that where it has been carried out in collaboration with, or supported by others, that this is duly acknowledged below and my contribution indicated. Previously published material is also acknowledged below. I attest that I have exercised reasonable care to ensure that the work is original, and does not to the best of my knowledge break any UK law, infringe any third party’s copyright or other Intellectual Property Right, or contain any confidential material. I accept that the College has the right to use plagiarism detection software to check the electronic version of the thesis. I confirm that this thesis has not been previously submitted for the award of a degree by this or any other university. The copyright of this thesis rests with the author and no quotation from it or information derived from it may be published without the prior written consent of the author. Signature: Date: Details of collaboration and publications Chapter 2 is published in Zohren et al. (2016): Zohren J, Wang N, Kardailsky I, Borrell JS, Joecker A, Nichols RA, Buggs RJA (2016). -
Global Survey of Ex Situ Betulaceae Collections Global Survey of Ex Situ Betulaceae Collections
Global Survey of Ex situ Betulaceae Collections Global Survey of Ex situ Betulaceae Collections By Emily Beech, Kirsty Shaw and Meirion Jones June 2015 Recommended citation: Beech, E., Shaw, K., & Jones, M. 2015. Global Survey of Ex situ Betulaceae Collections. BGCI. Acknowledgements BGCI gratefully acknowledges the many botanic gardens around the world that have contributed data to this survey (a full list of contributing gardens is provided in Annex 2). BGCI would also like to acknowledge the assistance of the following organisations in the promotion of the survey and the collection of data, including the Royal Botanic Gardens Edinburgh, Yorkshire Arboretum, University of Liverpool Ness Botanic Gardens, and Stone Lane Gardens & Arboretum (U.K.), and the Morton Arboretum (U.S.A). We would also like to thank contributors to The Red List of Betulaceae, which was a precursor to this ex situ survey. BOTANIC GARDENS CONSERVATION INTERNATIONAL (BGCI) BGCI is a membership organization linking botanic gardens is over 100 countries in a shared commitment to biodiversity conservation, sustainable use and environmental education. BGCI aims to mobilize botanic gardens and work with partners to secure plant diversity for the well-being of people and the planet. BGCI provides the Secretariat for the IUCN/SSC Global Tree Specialist Group. www.bgci.org FAUNA & FLORA INTERNATIONAL (FFI) FFI, founded in 1903 and the world’s oldest international conservation organization, acts to conserve threatened species and ecosystems worldwide, choosing solutions that are sustainable, based on sound science and take account of human needs. www.fauna-flora.org GLOBAL TREES CAMPAIGN (GTC) GTC is undertaken through a partnership between BGCI and FFI, working with a wide range of other organisations around the world, to save the world’s most threated trees and the habitats which they grow through the provision of information, delivery of conservation action and support for sustainable use. -
Climate Change and Primary Birch Forest (Betula Pubescens Ssp
International Journal of Research in Geography (IJRG) Volume 2, Issue 2, 2016, PP 36-47 ISSN 2454-8685 (Online) http://dx.doi.org/10.20431/2454-8685.0202004 www.arcjournals.org Climate Change and Primary Birch Forest (Betula pubescens ssp. czerepanovii) Succession in the Treeline Ecotone of the Swedish Scandes Leif Kullman Department of Ecology and Environmental Science Umeå University, SE 901 87 Umeå, Sweden [email protected] Abstract: In a context of recent climate change, the conversion of treeless alpine tundra to mountain birch (Betula pubescens ssp. czerepanovii) forest was studied by repeat photography, demographic and growth surveillance in permanent plots. In addition, flora change was recorded within the emerging birch forest stand. The study was initiated in 1980, when a large snow bank covered the site well into mid-July. Climate warming and associated enhanced snow melt since the early 20th century had made the snow disappear earlier during most summers. In response, a fairly dense population of seed-regenerated low-growing birch saplings gradually emerged. During subsequent decades, this population grew substantially in numbers. The population stagnated in average height until the early 1980s, when height growth and recruitment accelerated. Thereafter, a dense stand of tree-sized birches emerged. Concurrently, the character of the ground cover transformed from alpine to forest, as the presence of a tree layer governs the composition of the lower vegetation strata. Possibly, the course of elevational subalpine forest expansion in a hypothetical case of further climate warming is suggested by the present study. The establishment of this forest stand bears some resemblance to the first Holocene mountain birch forests. -
The Value of Birch in Upland Forests for Wildlife Conservation Gordon Patterson
Forestry Commission M iH Bulletin 109 The Value of Birch in Upland Forests for Wildlife Conservation Gordon Patterson Forestry Commission ARCHIVE FORESTRY COMMISSION BULLETIN 109 The Value of Birch in Upland Forests for Wildlife Conservation Gordon S. Patterson Forest Ecologist, Wildlife and Conservation Research Branch Northern Research Station, Roslin, Midlothian EH25 9SY LONDON: HMSO © Crown copyright 1993 Applications for reproduction should be made to HMSO ISBN 0 11 710316 0 FDC 907 : 176.1 : 151 : (410) KEYWORDS: Birch, Forests, Wildlife conservation, Uplands Enquiries relating to this publication should be addressed to: The Technical Publications Officer, The Forestry Authority, Forest Research Station, Alice Holt Lodge, Wrecclesham, Famham, Surrey, GU10 4LH. Front cover: Semi-natural woodland dominated by downy birch (Betula pubescens, ssp. pubescens) alongside the River Add in Kilmichael Forest, Argyll. Contents Page Summary iv Resume V Zusammenfassung vi 1. Introduction 1 2. Birch woodland 3 3. Effects of birch on soils 8 Birch-conifer mixtures 9 4. Wildlife associated with birch 11 Ground flora 11 Epiphytes 14 Fungi 15 Invertebrate animals 15 Birds 18 M ammals 21 Summary of birch: wildlife associations 22 5. Encouraging birch in upland forests 24 Linking new birch to existing semi-natural woodland 25 Birch in rides, roadsides, streamsides and glades 25 Birch within plantations 26 Methods of increasing birch cover 27 Effects of deer 28 Conclusions 29 Acknowledgements 30 References 30 The Value of Birch in Upland Forests for Wildlife Conservation Summary Broadleaved trees and shrubs are frequently scarce in upland forests in Britain, and national policy is to increase the proportion of broadleaves because of their value as wildlife habitat. -
Development of Downy Birch (Betula Pubescens Ehrh.) Coppice Stands During Nine Years
Article Development of Downy Birch (Betula pubescens Ehrh.) Coppice Stands during Nine Years Jyrki Hytönen Natural Resources Institute Finland, Natural Resources, Teknologiakatu 7, FI-67100 Kokkola, Finland; Jyrki.hytonen@luke.fi; Tel.: +35-82-9532-3405 Received: 6 August 2020; Accepted: 31 August 2020; Published: 1 September 2020 Abstract: Growing of dense, naturally regenerated downy birch stands using rotations of 24–26 years has been shown to be profitable. Coppicing would be a low-cost regeneration method, however, knowledge on the development of birch coppices is scarce. The height, stem number, and biomass development of sprouts originating from six clearcut stands in three age classes (A: 10–12 years, B: 15–16 years, C: 22–24 years) located in northern Finland was studied. Equations for estimating the aboveground biomass from height were developed for sprouts. The number of sprouts, and their height and biomass were measured annually during nine growing seasons. In addition, sprout damage was assessed. The number of sprouts per hectare was highest in the youngest age class (A) throughout the study period, even though the decrease in the number of stems due to self-thinning was also fastest (from 591,000 sprouts per ha to 105,000 sprouts per ha). The stand age class did not have an effect on either the mean (2.7 m) or dominant height (5.4 m) of birch sprouts. The total leafless above-ground biomass, the mean annual increment (MAI), and the current annual increment (CAI) were highest in the youngest stand age class (A) and lowest in the oldest age class (C). -
Effect of Latitude and Mountain Height on the Timberline (Betula Pubescens Ssp
Effect of latitude and mountain height on the timberline (Betula pubescens ssp. czerpanovii) elevation along the central Scandinavian mountain range ARVID ODLAND Odland, Arvid (2015). Effect of latitude and mountain height on the timberline (Betula pubescens ssp. czerpanovii) elevation along the central Scandinavian mountain range. Fennia 193: 2, 260–270. ISSN 1798-5617. Previously published isoline maps of Fennoscandian timberlines show that their highest elevations lie in the high mountain areas in central south Norway and from there the limits decrease in all directions. These maps are assumed to show differences in “climatic forest limits”, but the isoline patterns indicate that fac- tors other than climate may be decisive in most of the areas. Possibly the effects of ‘massenerhebung’ and the “summit syndrome” may locally have major effects on the timberline elevation. The main aim of the present study is to quantify the effect of latitude and mountain height on the regional variation of mountain birch timberline elevation. The study is a statistical analysis of previous pub- lished data on the timberline elevation and nearby mountain height. Selection of the study sites has been stratified to the Scandinavian mountain range (the Scandes) from 58 to 71o N where the timberlines reach their highest elevations. The data indicates that only the high mountain massifs in S Norway and N Swe- den are sufficiently high to allow birch forests to reach their potential elevations. Stepwise regression shows that latitude explains 70.9% while both latitude and mountain explain together 89.0% of the timberline variation. Where the moun- tains are low (approximately 1000 m higher than the measured local timber- lines) effects of the summit syndrome will lower the timberline elevation sub- stantially and climatically determined timberlines will probably not have been reached. -
Betula Nana L
Scientific name: Betula nana L. Family: Betulaceae Common names: bog birch, arctic dwarf birch, swamp birch Plant Description nutrient poor soil, but has no tolerance to salinity A perennial, deciduous shrub, spreading or ascending (USDA NRCS n.d.). to 3 m in height; bark, dark brown, smooth, close; Distribution: 0 to 3,400 m (Tollefson 2007). lenticels pale, inconspicuous, unexpanded; twigs Alberta, British Columbia, Manitoba, New covered with large, warty, resinous glands; leaf blade Brunswick, Newfoundland., Northwest Territories, is leathery, egg shaped to nearly circular with 2 to Nova Scotia, Ontario, Prince Edward Island, Quebec, 6 pairs of lateral veins, 0.5 to 3 × 1 to 2.5 cm, teeth Saskatchewan, Yukon; Alaska, California, Colorado, obtuse to rounded, surfaces, often covered with Idaho, Maine, Mont., New Hampshire, New York, resinous glands; flowers are monoecious; preformed Oregon, South Dakota, Utah, Washington, Wyoming male catkins are 2.5 to 5 cm long, pendant, and (eFloras n.d.). become much longer and yellow-green as they open Alaska, Yukon to southern Baffin Island south to in mid-spring; females are upright, 2.5 to 5 cm long, California, Nevada, Colorado, central Saskatchewan, and reddish green in color (eFloras n.d.). central Manitoba, Great Lakes, Newfoundland (Moss Seed: Samaras with wings narrower than body, 1983). broadest near summit, extended slightly beyond body apically (eFloras n.d.). Phenology Leaves appear in April to May (TLF 2012). Flowers from June to August, fruit ripens August to Betula nana catkins Habitat and Distribution Habitat: Arctic and alpine tundra, acidic rocky slopes and barrens, muskegs, peat bogs, stream banks, open subalpine summits. -
Growth Response of Betula Pubescens Ehrh. to Varying Disturbance Factors in Northern Norway
Trees https://doi.org/10.1007/s00468-020-02043-1 ORIGINAL ARTICLE Growth response of Betula pubescens Ehrh. to varying disturbance factors in northern Norway Lorenz Harr1 · Jan Esper1 · J. Andreas Kirchhefer2 · Wang Zhou1,3,4,5,6 · Claudia Hartl1 Received: 17 April 2020 / Accepted: 25 September 2020 © Springer-Verlag GmbH Germany, part of Springer Nature 2020 Abstract Key message Whereas cold temperatures and artifcial smoke pollution (during World War II) cause negative pointer years in northern Fennoscandian downy birches, mass outbreaks of Epirrita autumnata L. and Operophtera brumata Bkh. are the strongest growth-infuencing and -synchronizing factor. Abstract Variations in radial tree growth of downy birch can be afected by short-term environmental changes. Here we examine the tree-ring width of downy birch trees for signals caused by three diferent disturbance factors: climatic extremes, insect outbreaks, and artifcial smoke employed to hide the German battleship Tirpitz during World War II at the Kåford in northern Norway. Besides growth/climate response analysis using gridded climate data and a tree ring width-chronology of the studied birch trees, we analyze missing rings, pointer years, and the ability of recovery after severe disturbances on an individual tree basis using the percent change of the trees’ basal area increment with respect to a reference period. The downy birches reveal (1) a signifcant positive correlation with May and June temperatures, (2) a high growth sensitivity to moth epidemics (Epirrita autumnata L. and Operophtera brumata Bkh.), and (3) a distinct growth deviation in the year of intense but short-term artifcial smoke pollution. We conclude that downy birches are not exclusively sensitive to unusual cold temperatures, but short-term artifcial pollution and insect outbreaks cause similar growth declines in the year of occur- rence. -
Growth Responses to Flooding and Recovery of Deciduous Trees
Growth Responses to Flooding and Recovery of Deciduous Trees Jonathan Frye* and Wolfgang Grosse Botanisches Institut, Universität zu Köln, Gyrhofstraße 15, D-W-5000 Köln 41, Bundesrepublik Deutschland Z. Naturforsch. 47c, 683-689(1992); received May 11/June 29, 1992 Climatic Change, Deciduous Trees, Growth Response, Flooding, Recovery Tree seedling flooding tolerance for 22 species was assessed under controlled field condi tions. Initial heights under control (freely draining soil, n = 20 per species) and flooded (stand ing water, depth = 10 cm, n = 20 per species) conditions were measured in March 1990. Sur vival, height and diameter growth were determined after 120 days. Recovery from flooding effects was assessed in the following growing season from March to August, 1991. Taxodium distichum (L.) L. C. Rich, exhibited enhanced growth when flooded. Acer saccharinum L., Fraxinus excelsior L., and Quercus robur L. increased diameter but not height growth. The following species exhibited reduced growth and/or survival: Acer campestre L., Acer pseudo- platanus L., Acer rubrum L., Betula nigra L., Betula papyrifera Marsh, Betula pubescens Ehrh., Betula pendula Roth, Crataegus monogyna Jacq., Fagus grandifolia Ehrh., Prunus padus L., Prunus serotina Ehrh., Quercus palustris Muenchh., Quercus petraea (Mattuschka) Liebl., Rhamnus cathartica L., Salix purpurea L., Sorbus aucuparia L., Tilia cordata Mill., and Ulmus glabra Huds. emend. Moss. Recovery from flooding in the second growing season was well established with A. saccharinum, C. monogyna, Qu. palustris, Qu. petraea, S. purpurea, U. gla bra, while height growth relative to the flooding period was retarded in A. rubrum, F. grandi folia, F. excelsior, Qu. robur, Rh. cathartica, and S. -
A Comparison of the Betula Pubescens Dominated
Acta Bot. Neerl. December 425-437 38(4), 1989, p. A comparison of the history and present state of an Alnus glutinosa and a Betula pubescens dominated patch of wetland forest in the nature reserve ‘Het Molenven’, The Netherlands T.C.M. Brock*, R. JongerhuisP.C. van der Molenand E.T.H. Ran Hugo de Vries-Laboratory, University ofAmsterdam, Amsterdam, The Netherlands SUMMARY The species composition, the above-ground biomass of woody plants, herbs and mosses, and the age-structure of trees and shrubs were and dominated studied in an Alnus glutinosa a Betulapubescens patch of wetland forest in the nature reserve ‘Het Molenven’, The Netherlands. These patches were more or less similar in stand age and height of the water table, but differed in nutrient content of the substrate. Insight into the vegetational history of these sites was obtainedby analysing the micro-fossils and macro-remainsembedded the of the the in the peat. Man’s impact on hydrology reserve triggered observed changes in vegetation inboth woodland patches. The differentroutes in vegetation succession and the differences in sites be above-ground phytomass observed between the two can least in the differences in of the explained, at part, by chemistry substrate. Betulapubescens seems to be more sensitive to a rise in water table thanAlnus glutinosa, Frangula alnus and Salix cinerea, particularly because of its poorly developed ability to rejuvenate under water-logged conditions. Key-words: age-structure, biomass, vegetation succession, wetland forest, Alnus glutinosa, Betulapubescens, Frangula alnus, Salix cinerea. INTRODUCTION In his function as Professor in palynology and palaeo-ecology at the Hugo de Vries- Laboratory of the University of Amsterdam Dr Thomas van der Hammen stimulated ecological research in the nature reserve ‘Het Molenven’. -
Betula Pubescens Ehrh. & Betula Pendula Roth) (Betula Pubescens Ehrh. & Betula Pendula Roth
SHEET 4 (Betula pubescensBirch Ehrh. & Betula pendula Roth) Distribution & Provenance There are two species of birch native to Ireland. These are downy birch (Betula pubescens) and silver birch (Betula pendula). The two species are very similar and often confused. However, silver birch is more common on better soils, dry fen peats and sheltered areas. Downy birch is more commonly Birc Beith associated with exposed areas such as mountains. However, both are distributed widely in Ireland. Downy birch has an extensive natural range, incorporating the whole of northern Europe and Asia. Silver birch is a European species, h Natural distribution of extending south to the Mediterranean and east through silver birch northern Turkey to the Caspian Sea. Virtually all birch that (B is currently planted in Ireland is of Irish origin. etul Silviculture & Management in Ireland Birch is easily established and regenerates freely from a pub seed that travels long distances on the wind. A large tree can produce up to one million seeds in a year, but only a few of these will germinate and grow into mature trees. Birch will not regenerate or grow well in areas e where there is thick grass growth and if planted on such s a site, control of competing grass is essential. c Favourable conditions for birch natural regeneration are ens Ehrh. & B fertilised cutaway midland peats where growth can be prolific and vigorous. Once established, birch grows with great speed for the first 15 to 20 years and often can have grown to 10 metres in height after only 10 years. It is a strong light demander and will not grow in the shade of other species.