Reef Fish Breeding and Hatchery Production Using Brackishwater, A
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Understanding Transformative Forces of Aquaculture in the Marine Aquarium Trade
The University of Maine DigitalCommons@UMaine Electronic Theses and Dissertations Fogler Library Summer 8-22-2020 Senders, Receivers, and Spillover Dynamics: Understanding Transformative Forces of Aquaculture in the Marine Aquarium Trade Bryce Risley University of Maine, [email protected] Follow this and additional works at: https://digitalcommons.library.umaine.edu/etd Part of the Marine Biology Commons Recommended Citation Risley, Bryce, "Senders, Receivers, and Spillover Dynamics: Understanding Transformative Forces of Aquaculture in the Marine Aquarium Trade" (2020). Electronic Theses and Dissertations. 3314. https://digitalcommons.library.umaine.edu/etd/3314 This Open-Access Thesis is brought to you for free and open access by DigitalCommons@UMaine. It has been accepted for inclusion in Electronic Theses and Dissertations by an authorized administrator of DigitalCommons@UMaine. For more information, please contact [email protected]. SENDERS, RECEIVERS, AND SPILLOVER DYNAMICS: UNDERSTANDING TRANSFORMATIVE FORCES OF AQUACULTURE IN THE MARINE AQUARIUM TRADE By Bryce Risley B.S. University of New Mexico, 2014 A THESIS Submitted in Partial Fulfillment of the Requirements for the Degree of Master of Science (in Marine Policy and Marine Biology) The Graduate School The University of Maine May 2020 Advisory Committee: Joshua Stoll, Assistant Professor of Marine Policy, Co-advisor Nishad Jayasundara, Assistant Professor of Marine Biology, Co-advisor Aaron Strong, Assistant Professor of Environmental Studies (Hamilton College) Christine Beitl, Associate Professor of Anthropology Douglas Rasher, Senior Research Scientist of Marine Ecology (Bigelow Laboratory) Heather Hamlin, Associate Professor of Marine Biology No photograph in this thesis may be used in another work without written permission from the photographer. -
Thesis and Paper II
Adaptation of anemonefish to their host anemones: From Genetics to Physiology Nguyen Thi Hai Thanh Thesis for the degree of Philosophiae Doctor (PhD) University of Bergen, Norway 2020 Adaptation of anemonefish to their host anemones: From Genetics to Physiology Nguyen Thi Hai Thanh ThesisAvhandling for the for degree graden of philosophiaePhilosophiae doctorDoctor (ph.d (PhD). ) atved the Universitetet University of i BergenBergen Date of defense:2017 21.02.2020 Dato for disputas: 1111 © Copyright Nguyen Thi Hai Thanh The material in this publication is covered by the provisions of the Copyright Act. Year: 2020 Title: Adaptation of anemonefish to their host anemones: From Genetics to Physiology Name: Nguyen Thi Hai Thanh Print: Skipnes Kommunikasjon / University of Bergen Scientific environment i Scientific environment The work of this doctoral thesis was financed by the Norwegian Agency for Development Cooperation through the project “Incorporating Climate Change into Ecosystem Approaches to Fisheries and Aquaculture Management” (SRV-13/0010) The experiments were carried out at the Center for Aquaculture Animal Health and Breeding Studies (CAAHBS) and Institute of Biotechnology and Environment, Nha Trang University (NTU), Vietnam from 2015 to 2017 under the supervision of Dr Dang T. Binh, Dr Ha L.T.Loc and Assoc. Professor Ngo D. Nghia. The study was continued at the Department of Biology, University of Bergen under the supervision of Professor Audrey J. Geffen. Acknowledgements ii Acknowledgements During these years of my journey, there are so many people I would like to thank for their support in the completion of my PhD. I would like to express my gratitude to my principle supervisor Audrey J. -
Embryonic Development of Percula Clownfish, Amphiprion Percula (Lacepede, 1802)
Middle-East Journal of Scientific Research 4 (2): 84-89, 2009 ISSN 1990-9233 © IDOSI Publications, 2009 Embryonic Development of Percula Clownfish, Amphiprion percula (Lacepede, 1802) 11K.V. Dhaneesh, T.T. Ajith Kumar and 2T. Shunmugaraj 1Centre of Advanced Study in Marine Biology, Annamalai University Parangipettai-608 502, Tamilnadu, India 2Centre for Marine Living Resources and Ecology, Ministry of Earth Sciences, Cochin, Kerala, India Abstract: The Percula clownfish, Amphiprion percula (Lacepede, 1802) were reared in marine ornamental fish hatchery by using estuarine water to study their spawning behaviour, egg deposition and embryonic development. The spawning was recorded year round with the reproductive cycle between 14-21 days. The eggs were adhesive type, capsule shaped and bright orange in colour measuring 2.0-2.3 mm length and 1.0-1.2 mm width containing fat globules. The process of embryonic development was divided into 26 stages based on the morphological characteristics of the developing embryo. The time elapsed for each embryonic developmental stage was recorded. Hatching took place 151-152 hours after fertilization. Key words: Percula clownfish Captive condition Morphology Embryonic development INTRODUCTION transported to the hatchery at Centre of Advanced Study in Marine Biology, Annamalai University, Parangipettai, The anemonefish, Amphiprion percula is a tropical Tamil Nadu, India. For the better health and survival, the coral reef fish belonging to the family Pomacentridae fishes and anemones were packed in individual polythene and sub family Amphiprioninae and they are one of the bags filled with sufficient oxygen. After transportation, most popular attractions in the marine ornamental fish the fishes and anemones were accommodated in a trade. -
Molecular Evolution of Ultraviolet Visual Opsins and Spectral Tuning Of
bioRxiv preprint doi: https://doi.org/10.1101/2020.06.09.139766; this version posted June 10, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Seeing Nemo: molecular evolution of ultraviolet visual opsins and spectral tuning of photoreceptors in anemonefishes (Amphiprioninae) Laurie J. Mitchell 1, Karen L. Cheney 1, Wen-Sung Chung 2, N. Justin Marshall 2, Kyle Michie 2, 3, Fabio Cortesi 2 1 School of Biological Sciences, The University of Queensland, Brisbane, QLD 4072, Australia 2 Queensland Brain Institute, The University of Queensland, Brisbane, QLD 4072, Australia 3 King’s College, Cambridge, CB2 1ST, UK *Corresponding authors: [email protected], [email protected] Keywords: Visual opsins, spectral tuning, reef fish vision, anemonefishes, ultraviolet, gene duplication Abstract Many animals can see short-wavelength or ultraviolet (UV) light (shorter than 400 nm) undetectable to human vision. UV vision may have functional importance in many taxa including for foraging and communication in birds, reptiles, insects and teleost fishes. Shallow coral reefs transmit a broad spectrum of light and are rich in UV; driving the evolution of diverse spectral sensitivities in teleost reef fishes, including UV-sensitivity. However, the identities and sites of the specific visual genes that underly vision in reef fishes remain elusive and are useful in determining how molecular evolution has tuned vision to meet the ecological demands of life on the reef. -
Orange Clownfish (Amphiprion Percula)
NOAA Technical Memorandum NMFS-PIFSC-52 April 2016 doi:10.7289/V5J10152 Status Review Report: Orange Clownfish (Amphiprion percula) Kimberly A. Maison and Krista S. Graham Pacific Islands Fisheries Science Center National Marine Fisheries Service National Oceanic and Atmospheric Administration U.S. Department of Commerce About this document The mission of the National Oceanic and Atmospheric Administration (NOAA) is to understand and predict changes in the Earth’s environment and to conserve and manage coastal and oceanic marine resources and habitats to help meet our Nation’s economic, social, and environmental needs. As a branch of NOAA, the National Marine Fisheries Service (NMFS) conducts or sponsors research and monitoring programs to improve the scientific basis for conservation and management decisions. NMFS strives to make information about the purpose, methods, and results of its scientific studies widely available. NMFS’ Pacific Islands Fisheries Science Center (PIFSC) uses the NOAA Technical Memorandum NMFS series to achieve timely dissemination of scientific and technical information that is of high quality but inappropriate for publication in the formal peer- reviewed literature. The contents are of broad scope, including technical workshop proceedings, large data compilations, status reports and reviews, lengthy scientific or statistical monographs, and more. NOAA Technical Memoranda published by the PIFSC, although informal, are subjected to extensive review and editing and reflect sound professional work. Accordingly, they may be referenced in the formal scientific and technical literature. A NOAA Technical Memorandum NMFS issued by the PIFSC may be cited using the following format: Maison, K. A., and K. S. Graham. 2016. Status Review Report: Orange Clownfish (Amphiprion percula). -
Patterns of Evolution in Gobies (Teleostei: Gobiidae): a Multi-Scale Phylogenetic Investigation
PATTERNS OF EVOLUTION IN GOBIES (TELEOSTEI: GOBIIDAE): A MULTI-SCALE PHYLOGENETIC INVESTIGATION A Dissertation by LUKE MICHAEL TORNABENE BS, Hofstra University, 2007 MS, Texas A&M University-Corpus Christi, 2010 Submitted in Partial Fulfillment of the Requirements for the Degree of DOCTOR OF PHILOSOPHY in MARINE BIOLOGY Texas A&M University-Corpus Christi Corpus Christi, Texas December 2014 © Luke Michael Tornabene All Rights Reserved December 2014 PATTERNS OF EVOLUTION IN GOBIES (TELEOSTEI: GOBIIDAE): A MULTI-SCALE PHYLOGENETIC INVESTIGATION A Dissertation by LUKE MICHAEL TORNABENE This dissertation meets the standards for scope and quality of Texas A&M University-Corpus Christi and is hereby approved. Frank L. Pezold, PhD Chris Bird, PhD Chair Committee Member Kevin W. Conway, PhD James D. Hogan, PhD Committee Member Committee Member Lea-Der Chen, PhD Graduate Faculty Representative December 2014 ABSTRACT The family of fishes commonly known as gobies (Teleostei: Gobiidae) is one of the most diverse lineages of vertebrates in the world. With more than 1700 species of gobies spread among more than 200 genera, gobies are the most species-rich family of marine fishes. Gobies can be found in nearly every aquatic habitat on earth, and are often the most diverse and numerically abundant fishes in tropical and subtropical habitats, especially coral reefs. Their remarkable taxonomic, morphological and ecological diversity make them an ideal model group for studying the processes driving taxonomic and phenotypic diversification in aquatic vertebrates. Unfortunately the phylogenetic relationships of many groups of gobies are poorly resolved, obscuring our understanding of the evolution of their ecological diversity. This dissertation is a multi-scale phylogenetic study that aims to clarify phylogenetic relationships across the Gobiidae and demonstrate the utility of this family for studies of macroevolution and speciation at multiple evolutionary timescales. -
Phylogenetic Analysis of Anemone Fishes of the Persian Gulf Using Mtdna Sequences
African Journal of Biotechnology Vol. 7 (12), pp. 2074-2080, 17 June, 2008 Available online at http://www.academicjournals.org/AJB ISSN 1684–5315 © 2008 Academic Journals Full Length Research Paper Phylogenetic analysis of anemone fishes of the Persian Gulf using mtDNA sequences Ghorashi, S. A.1,2*, Fatemi, S. M.1, Amini, F.³, Houshmand, M.2, Salehi Tabar, R.2 and Hazaie, K.1 1Department of Marine Biology, Islamic Azad University, Science and Research Branch, Hesarak, Tehran, Iran. 2Department of Microbiology, National Institute of Genetic Engineering and Biotechnology, Pajouhesh BLV, Tehran, Iran. ³Aquatic Animals Health and Diseases, Faculty of Veterinary Medicine, University of Tehran, Tehran, Iran. Accepted 4 April, 2008 Anemone fishes are a group of 28 species of coral reef fishes belonging to the family, Pomacentridae; subfamily, Amphiprioninae and all have an obligate symbiotic relationship with sea anemones. Two species of these small ornamental fishes have been identified in the Persian Gulf including Amphiprion clarkii and Amphiprion sebae. The phylogenetic relationship between Amphiprion species of the Persian Gulf was studied by collecting 15 samples from three Iranian islands, Larak, Farur and Kish. DNA was extracted from each sample and a part of mtDNA was amplified. Two pairs of primers were designed to amplify a final target of 400 bp by nested-PCR. Each amplican was sequenced, aligned and genetic diversity among samples was investigated by phylogenetic analysis. Results show that there is no significant genetic variation among A. clarkii individuals; however, A. sebae individuals from Larak were different from other fishes of the same species. Most probably this is due to the ability of A. -
Stichodactyla Gigantea and Heteractis Magnifica) at Two Small Islands in Kimbe Bay
Fine-scale population structure of two anemones (Stichodactyla gigantea and Heteractis magnifica) in Kimbe Bay, Papua New Guinea Thesis by Remy Gatins Aubert In Partial Fulfillment of the Requirements For the Degree of Master of Science in Marine Science King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia December 2014 2 The thesis of Remy Gatins Aubert is approved by the examination committee. Committee Chairperson: Dr. Michael Berumen Committee Member: Dr. Xabier Irigoien Committee Member: Dr. Pablo Saenz-Agudelo Committee Member: Dr. Anna Scott EXAMINATION COMMITTEE APPROVALS FORM 3 COPYRIGHT PAGE © 2014 Remy Gatins Aubert All Rights Reserved 4 ABSTRACT Fine-scale population structure of two anemones (Stichodactyla gigantea and Heteractis magnifica) in Kimbe Bay, Papua New Guinea. Anemonefish are one of the main groups that have been used over the last decade to empirically measure larval dispersal and connectivity in coral reef populations. A few species of anemones are integral to the life history of these fish, as well as other obligate symbionts, yet the biology and population structure of these anemones remains poorly understood. The aim of this study was to measure the genetic structure of these anemones within and between two reefs in order to assess their reproductive mode and dispersal potential. To do this, we sampled almost exhaustively two anemones species (Stichodactyla gigantea and Heteractis magnifica) at two small islands in Kimbe Bay (Papua New Guinea) separated by approximately 25 km. Both the host anemones and the anemonefish are heavily targeted for the aquarium trade, in addition to the populations being affected by bleaching pressures (Hill and Scott 2012; Hobbs et al. -
Training Manual Series No.15/2018
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by CMFRI Digital Repository DBTR-H D Indian Council of Agricultural Research Ministry of Science and Technology Central Marine Fisheries Research Institute Department of Biotechnology CMFRI Training Manual Series No.15/2018 Training Manual In the frame work of the project: DBT sponsored Three Months National Training in Molecular Biology and Biotechnology for Fisheries Professionals 2015-18 Training Manual In the frame work of the project: DBT sponsored Three Months National Training in Molecular Biology and Biotechnology for Fisheries Professionals 2015-18 Training Manual This is a limited edition of the CMFRI Training Manual provided to participants of the “DBT sponsored Three Months National Training in Molecular Biology and Biotechnology for Fisheries Professionals” organized by the Marine Biotechnology Division of Central Marine Fisheries Research Institute (CMFRI), from 2nd February 2015 - 31st March 2018. Principal Investigator Dr. P. Vijayagopal Compiled & Edited by Dr. P. Vijayagopal Dr. Reynold Peter Assisted by Aditya Prabhakar Swetha Dhamodharan P V ISBN 978-93-82263-24-1 CMFRI Training Manual Series No.15/2018 Published by Dr A Gopalakrishnan Director, Central Marine Fisheries Research Institute (ICAR-CMFRI) Central Marine Fisheries Research Institute PB.No:1603, Ernakulam North P.O, Kochi-682018, India. 2 Foreword Central Marine Fisheries Research Institute (CMFRI), Kochi along with CIFE, Mumbai and CIFA, Bhubaneswar within the Indian Council of Agricultural Research (ICAR) and Department of Biotechnology of Government of India organized a series of training programs entitled “DBT sponsored Three Months National Training in Molecular Biology and Biotechnology for Fisheries Professionals”. -
Comparative Phylogeography in Fijian Coral Reef Fishes: a Multi-Taxa Approach Towards Marine Reserve Design
Comparative Phylogeography in Fijian Coral Reef Fishes: A Multi-Taxa Approach towards Marine Reserve Design Joshua A. Drew1*, Paul H. Barber2 1 Department of Ecology, Evolution and Environmental Biology, Columbia University, New York, New York, United States of America, 2 Department of Ecology and Evolutionary Biology, University of California Los Angeles, Los Angeles, California, United States of America Abstract Delineating barriers to connectivity is important in marine reserve design as they describe the strength and number of connections among a reserve’s constituent parts, and ultimately help characterize the resilience of the system to perturbations at each node. Here we demonstrate the utility of multi-taxa phylogeography in the design of a system of marine protected areas within Fiji. Gathering mtDNA control region data from five species of coral reef fish in five genera and two families, we find a range of population structure patterns, from those experiencing little (Chrysiptera talboti, Halichoeres hortulanus, and Pomacentrus maafu), to moderate (Amphiprion barberi, Wst = 0.14 and Amblyglyphidodon orbicularis Wst = 0.05) barriers to dispersal. Furthermore estimates of gene flow over ecological time scales suggest species- specific, asymmetric migration among the regions within Fiji. The diversity among species-specific results underscores the limitations of generalizing from single-taxon studies, including the inability to differentiate between a species-specific result and a replication of concordant phylogeographic patterns, and suggests that greater taxonomic coverage results in greater resolution of community dynamics within Fiji. Our results indicate that the Fijian reefs should not be managed as a single unit, and that closely related species can express dramatically different levels of population connectivity. -
UCLA Previously Published Works
UCLA UCLA Previously Published Works Title Comparative phylogeography in Fijian coral reef fishes: a multi-taxa approach towards marine reserve design. Permalink https://escholarship.org/uc/item/6jd244rr Journal PloS one, 7(10) ISSN 1932-6203 Authors Drew, Joshua A Barber, Paul H Publication Date 2012 DOI 10.1371/journal.pone.0047710 Peer reviewed eScholarship.org Powered by the California Digital Library University of California Comparative Phylogeography in Fijian Coral Reef Fishes: A Multi-Taxa Approach towards Marine Reserve Design Joshua A. Drew1*, Paul H. Barber2 1 Department of Ecology, Evolution and Environmental Biology, Columbia University, New York, New York, United States of America, 2 Department of Ecology and Evolutionary Biology, University of California Los Angeles, Los Angeles, California, United States of America Abstract Delineating barriers to connectivity is important in marine reserve design as they describe the strength and number of connections among a reserve’s constituent parts, and ultimately help characterize the resilience of the system to perturbations at each node. Here we demonstrate the utility of multi-taxa phylogeography in the design of a system of marine protected areas within Fiji. Gathering mtDNA control region data from five species of coral reef fish in five genera and two families, we find a range of population structure patterns, from those experiencing little (Chrysiptera talboti, Halichoeres hortulanus, and Pomacentrus maafu), to moderate (Amphiprion barberi, Wst = 0.14 and Amblyglyphidodon -
Climate Change & the Physiology, Ecology
CLIMATE CHANGE & THE PHYSIOLOGY, ECOLOGY, & BEHAVIOR OF CORAL REEF ORGANISMS A Dissertation Presented to The Academic Faculty by Nicole K. Johnston In Partial Fulfillment of the Requirements for the Degree Doctor of Philosophy in the School of Biological Sciences Georgia Institute of Technology May 2020 COPYRIGHT © 2020 BY Nicole K. Johnston CLIMATE CHANGE & THE PHYSIOLOGY, ECOLOGY, & BEHAVIOR OF CORAL REEF ORGANISMS Approved by: Dr. Mark Hay, Advisor Dr. Frank Stewart School of Biological Sciences School of Biological Sciences Georgia Institute of Technology Georgia Institute of Technology Dr. Julia Kubanek Dr. Valerie Paul School of Biological Sciences & Smithsonian Marine Station School of Chemistry & Biochemistry Smithsonian Institution Georgia Institute of Technology Dr. Lin Jiang School of Biological Sciences Georgia Institute of Technology Date Approved: 04 March 2020 I would like to dedicate my dissertation to my parents, Nancy J. Johnston & Ronald W. Johnston, without whom none of this would have been possible. ACKNOWLEDGEMENTS First, I would like to thank my advisor, Dr. Mark Hay. His mentorship, support, and insight were invaluable as I progressed along this road. I also extend my deepest thanks to the other members of my committee, Dr. Valerie Paul, Dr. Lin Jiang, Dr. Frank Stewart, & Dr. Julia Kubanek, for their help and guidance over the years. I would like to thank the many people of the Smithsonian Marine Station (SMS), particularly Dr. Justin Campbell, Dr. Jennifer Sneed, Woody Lee, & Sherry Reed, who provided vital insight, support, and assistance during my time at SMS and beyond. I am also very grateful to Dr. Danielle Dixson, Dr. Jinu Mathew Valayil, Dr.