Three Challenges to Contemporaneous Taxonomy from a Licheno-Mycological Perspective
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New Species of Graphidaceae from the Neotropics and Southeast Asia
Phytotaxa 189 (1): 289–311 ISSN 1179-3155 (print edition) www.mapress.com/phytotaxa/ Article PHYTOTAXA Copyright © 2014 Magnolia Press ISSN 1179-3163 (online edition) http://dx.doi.org/10.11646/phytotaxa.189.1.21 New species of Graphidaceae from the Neotropics and Southeast Asia HARRIE J. M. SIPMAN Freie Universität, Botanischer Garten & Botanisches Museum, Königin-Luise-Strasse 6-8, D-14195 Berlin, Germany; email: [email protected] Abstract Descriptions and illustrations are provided for 20 new species in the family Graphidaceae (lichenized fungi) originating from El Salvador, the Guianas, Venezuela, Colombia, and Malaysia: Acanthothecis adjuncta Welz & Sipman, differing from all other Acanthothecis species by the rounded ascocarps with covered discs; Astrochapsa albella Sipman, differing from A. meridensis in the white apothecium rim, the corticolous growth habit, the more or less clear hymenium, and the protocetraric acid chemistry; A. columnaris Sipman, differing from other Astrochapsa species by the columnar marginal slips; Chapsa francisci Sipman, differing from other Chapsa species by the numerous marginal lacinae; C. nubila Sipman, differing from other Chapsa species by the combination of a guttulate hymenium and 4- to 8-spored asci; Diorygma extensum Sipman, differing from D. minisporum in producing norstictic acid instead of stictic acid; Fissurina chapsoides Sipman, a Fissurina species with large, muriform ascospores and short ascocarps opening mostly by branched slits; F. gigas Sipman, differing from F. rufula in the larger ascomata and muriform ascospores; F. v or a x Sipman, differing from other Fissurina species by the aggregated ascocarps in combination with papillose paraphysis tips; Graphis murali-elegans Sipman, differing from G. -
Response of Ectomycorrhizal Fungi to Inorganic and Organic Forms of Nitrogen and Phosphorus
Michigan Technological University Digital Commons @ Michigan Tech Dissertations, Master's Theses and Master's Dissertations, Master's Theses and Master's Reports - Open Reports 2012 RESPONSE OF ECTOMYCORRHIZAL FUNGI TO INORGANIC AND ORGANIC FORMS OF NITROGEN AND PHOSPHORUS Christa M. Luokkala Michigan Technological University Follow this and additional works at: https://digitalcommons.mtu.edu/etds Part of the Forest Sciences Commons Copyright 2012 Christa M. Luokkala Recommended Citation Luokkala, Christa M., "RESPONSE OF ECTOMYCORRHIZAL FUNGI TO INORGANIC AND ORGANIC FORMS OF NITROGEN AND PHOSPHORUS", Master's report, Michigan Technological University, 2012. https://doi.org/10.37099/mtu.dc.etds/611 Follow this and additional works at: https://digitalcommons.mtu.edu/etds Part of the Forest Sciences Commons RESPONSE OF ECTOMYCORRHIZAL FUNGI TO INORGANIC AND ORGANIC FORMS OF NITROGEN AND PHOSPHORUS By Christa M. Luokkala A REPORT Submitted in partial fulfillment of the requirements for the degree of MASTER OF SCIENCE In Applied Ecology MICHIGAN TECHNOLOGICAL UNIVERSITY 2012 © 2012 Christa M. Luokkala This report has been approved in partial fulfillment of the requirements for the Degree of MASTER OF SCIENCE in Applied Ecology. School of Forest Resources and Environmental Science Report Advisor: Dr. Erik A. Lilleskov Committee Member: Dr. Susan A. Bagley Committee Member: Dr. Dana L. Richter Committee Member: Dr. Christopher W. Swanston School Dean: Dr. Terry L. Sharik Table of Contents Abstract ............................................................................................................................. -
Fertility-Dependent Effects of Ectomycorrhizal Fungal Communities on White Spruce Seedling Nutrition
Mycorrhiza (2015) 25:649–662 DOI 10.1007/s00572-015-0640-9 ORIGINAL PAPER Fertility-dependent effects of ectomycorrhizal fungal communities on white spruce seedling nutrition Alistair J. H. Smith II1 & Lynette R. Potvin2 & Erik A. Lilleskov2 Received: 14 January 2015 /Accepted: 6 April 2015 /Published online: 24 April 2015 # Springer-Verlag Berlin Heidelberg (outside the USA) 2015 Abstract Ectomycorrhizal fungi (EcMF) typically colonize manganese, and Atheliaceae sp. had a negative relationship with nursery seedlings, but nutritional and growth effects of these P content. Findings shed light on the community and species communities are only partly understood. To examine these ef- effects on seedling condition, revealing clear functional differ- fects, Picea glauca seedlings collected from a tree nursery natu- ences among dominants. The approach used should be scalable rally colonized by three dominant EcMF were divided between to explore function in more complex communities composed of fertilized and unfertilized treatments. After one growing season unculturable EcMF. seedlings were harvested, ectomycorrhizas identified using DNA sequencing, and seedlings analyzed for leaf nutrient concentra- Keywords Stoichiometry . Ectomycorrhizal fungal tion and content, and biomass parameters. EcMF community community effects . Nitrogen . Phosphorus . Micronutrients . structure–nutrient interactions were tested using nonmetric mul- Amphinema . Atheliaceae . Thelephora terrestris . tidimensional scaling (NMDS) combined with vector analysis of Greenhouse foliar nutrients and biomass. We identified three dominant spe- cies: Amphinema sp., Atheliaceae sp., and Thelephora terrestris. NMDS+envfit revealed significant community effects on seed- Introduction ling nutrition that differed with fertilization treatment. PERM ANOVA and regression analyses uncovered significant species Seedlings regenerating naturally or artificially are influenced by effects on host nutrient concentration, content, and stoichiometry. -
Major Clades of Agaricales: a Multilocus Phylogenetic Overview
Mycologia, 98(6), 2006, pp. 982–995. # 2006 by The Mycological Society of America, Lawrence, KS 66044-8897 Major clades of Agaricales: a multilocus phylogenetic overview P. Brandon Matheny1 Duur K. Aanen Judd M. Curtis Laboratory of Genetics, Arboretumlaan 4, 6703 BD, Biology Department, Clark University, 950 Main Street, Wageningen, The Netherlands Worcester, Massachusetts, 01610 Matthew DeNitis Vale´rie Hofstetter 127 Harrington Way, Worcester, Massachusetts 01604 Department of Biology, Box 90338, Duke University, Durham, North Carolina 27708 Graciela M. Daniele Instituto Multidisciplinario de Biologı´a Vegetal, M. Catherine Aime CONICET-Universidad Nacional de Co´rdoba, Casilla USDA-ARS, Systematic Botany and Mycology de Correo 495, 5000 Co´rdoba, Argentina Laboratory, Room 304, Building 011A, 10300 Baltimore Avenue, Beltsville, Maryland 20705-2350 Dennis E. Desjardin Department of Biology, San Francisco State University, Jean-Marc Moncalvo San Francisco, California 94132 Centre for Biodiversity and Conservation Biology, Royal Ontario Museum and Department of Botany, University Bradley R. Kropp of Toronto, Toronto, Ontario, M5S 2C6 Canada Department of Biology, Utah State University, Logan, Utah 84322 Zai-Wei Ge Zhu-Liang Yang Lorelei L. Norvell Kunming Institute of Botany, Chinese Academy of Pacific Northwest Mycology Service, 6720 NW Skyline Sciences, Kunming 650204, P.R. China Boulevard, Portland, Oregon 97229-1309 Jason C. Slot Andrew Parker Biology Department, Clark University, 950 Main Street, 127 Raven Way, Metaline Falls, Washington 99153- Worcester, Massachusetts, 01609 9720 Joseph F. Ammirati Else C. Vellinga University of Washington, Biology Department, Box Department of Plant and Microbial Biology, 111 355325, Seattle, Washington 98195 Koshland Hall, University of California, Berkeley, California 94720-3102 Timothy J. -
Four <I>Parmeliaceae</I> Species Excluded from <I>Bulbothrix</I>
MYCOTAXON Volume 111, pp. 387–401 January–March 2010 Four Parmeliaceae species excluded from Bulbothrix Michel N. Benatti1 & Marcelo P. Marcelli2 1 [email protected] & 2 [email protected] Instituto de Botânica, Seção de Micologia e Liquenologia Caixa Postal 3005, São Paulo/SP, CEP 01061-970, Brazil Abstract — Four species previously included in the genus Bulbothrix are shown not to form bulbate cilia and are combined into alternative genera as Hypotrachyna tuskiformis, Parmelinopsis pinguiacida, P. subinflata, and Parmotrema yunnanum. All species are described in detail and a lectotype is selected for Bulbothrix tuskiformis. Key words — Bulbothrix pinguiacida, Bulbothrix subinflata, Bulbothrix yunnana Introduction The genus Bulbothrix Hale was proposed for a group of species previously included in Parmelia ser. Bicornutae (Lynge) Hale & Kurokawa (Hale 1974) characterized by small laciniate, adnate thalli, bulbate marginal cilia, cortical atranorin, simple to branched cilia and rhizines, smooth to coronate apothecia, unicellular, colorless, ellipsoid to bicornute ascospores 5−21 × 4−12 μm, and small, bacilliform to bifusiform conidia 5−10 µm long (Hale 1976b, Elix 1993a). During a taxonomic revision of the genus we found four species previously included in Bulbothrix that do not have the typical cilia with hollow basal bulbae that contain differentiated cells and an oily substance (Hale 1975, Feuerer & Marth 1997) should be classified outside this genus. These four species are distributed in Southeast Asia and Oceania. Hypotrachyna tuskiformis is still only known from the type locality in Papua New Guinea (Elix 1997b), Parmelinopsis pinguiacida from New Caledonia and Rarotonga (Louwhoff & Elix 2000a, 2000b), Parmelinopsis subinflata from the Philippines, Australia, Malaysia, and Papua New Guinea (Hale 1965, 1976b, Sipman 1993, Streimann 1986), and Parmotrema yunnanum from southern China (Wang et al. -
Mycosphere Notes 225–274: Types and Other Specimens of Some Genera of Ascomycota
Mycosphere 9(4): 647–754 (2018) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/9/4/3 Copyright © Guizhou Academy of Agricultural Sciences Mycosphere Notes 225–274: types and other specimens of some genera of Ascomycota Doilom M1,2,3, Hyde KD2,3,6, Phookamsak R1,2,3, Dai DQ4,, Tang LZ4,14, Hongsanan S5, Chomnunti P6, Boonmee S6, Dayarathne MC6, Li WJ6, Thambugala KM6, Perera RH 6, Daranagama DA6,13, Norphanphoun C6, Konta S6, Dong W6,7, Ertz D8,9, Phillips AJL10, McKenzie EHC11, Vinit K6,7, Ariyawansa HA12, Jones EBG7, Mortimer PE2, Xu JC2,3, Promputtha I1 1 Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand 2 Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, 132 Lanhei Road, Kunming 650201, China 3 World Agro Forestry Centre, East and Central Asia, 132 Lanhei Road, Kunming 650201, Yunnan Province, People’s Republic of China 4 Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing, Yunnan 655011, China 5 Shenzhen Key Laboratory of Microbial Genetic Engineering, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen 518060, China 6 Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand 7 Department of Entomology and Plant Pathology, Faculty of Agriculture, Chiang Mai University, Chiang Mai 50200, Thailand 8 Department Research (BT), Botanic Garden Meise, Nieuwelaan 38, BE-1860 Meise, Belgium 9 Direction Générale de l'Enseignement non obligatoire et de la Recherche scientifique, Fédération Wallonie-Bruxelles, Rue A. -
Three Challenges to Contemporaneous Taxonomy from a Licheno-Mycological Perspective
Megataxa 001 (1): 078–103 ISSN 2703-3082 (print edition) https://www.mapress.com/j/mt/ MEGATAXA Copyright © 2020 Magnolia Press Review ISSN 2703-3090 (online edition) https://doi.org/10.11646/megataxa.1.1.16 Three challenges to contemporaneous taxonomy from a licheno-mycological perspective ROBERT LÜCKING Botanischer Garten und Botanisches Museum, Freie Universität Berlin, Königin-Luise-Straße 6–8, 14195 Berlin, Germany �[email protected]; https://orcid.org/0000-0002-3431-4636 Abstract Nagoya Protocol, and does not need additional “policing”. Indeed, the Nagoya Protocol puts the heaviest burden on This paper discusses three issues that challenge contempora- taxonomy and researchers cataloguing biodiversity, whereas neous taxonomy, with examples from the fields of mycology for the intended target group, namely those seeking revenue and lichenology, formulated as three questions: (1) What is gain from nature, the protocol may not actually work effec- the importance of taxonomy in contemporaneous and future tively. The notion of currently freely accessible digital se- science and society? (2) An increasing methodological gap in quence information (DSI) to become subject to the protocol, alpha taxonomy: challenge or opportunity? (3) The Nagoya even after previous publication, is misguided and conflicts Protocol: improvement or impediment to the science of tax- with the guidelines for ethical scientific conduct. Through onomy? The importance of taxonomy in society is illustrated its implementation of the Nagoya Protocol, Colombia has using the example of popular field guides and digital me- set a welcome precedence how to exempt taxonomic and dia, a billion-dollar business, arguing that the desire to name systematic research from “access to genetic resources”, and species is an intrinsic feature of the cognitive component of hopefully other biodiversity-rich countries will follow this nature connectedness of humans. -
An Evolving Phylogenetically Based Taxonomy of Lichens and Allied Fungi
Opuscula Philolichenum, 11: 4-10. 2012. *pdf available online 3January2012 via (http://sweetgum.nybg.org/philolichenum/) An evolving phylogenetically based taxonomy of lichens and allied fungi 1 BRENDAN P. HODKINSON ABSTRACT. – A taxonomic scheme for lichens and allied fungi that synthesizes scientific knowledge from a variety of sources is presented. The system put forth here is intended both (1) to provide a skeletal outline of the lichens and allied fungi that can be used as a provisional filing and databasing scheme by lichen herbarium/data managers and (2) to announce the online presence of an official taxonomy that will define the scope of the newly formed International Committee for the Nomenclature of Lichens and Allied Fungi (ICNLAF). The online version of the taxonomy presented here will continue to evolve along with our understanding of the organisms. Additionally, the subfamily Fissurinoideae Rivas Plata, Lücking and Lumbsch is elevated to the rank of family as Fissurinaceae. KEYWORDS. – higher-level taxonomy, lichen-forming fungi, lichenized fungi, phylogeny INTRODUCTION Traditionally, lichen herbaria have been arranged alphabetically, a scheme that stands in stark contrast to the phylogenetic scheme used by nearly all vascular plant herbaria. The justification typically given for this practice is that lichen taxonomy is too unstable to establish a reasonable system of classification. However, recent leaps forward in our understanding of the higher-level classification of fungi, driven primarily by the NSF-funded Assembling the Fungal Tree of Life (AFToL) project (Lutzoni et al. 2004), have caused the taxonomy of lichen-forming and allied fungi to increase significantly in stability. This is especially true within the class Lecanoromycetes, the main group of lichen-forming fungi (Miadlikowska et al. -
Lichen Functional Trait Variation Along an East-West Climatic Gradient in Oregon and Among Habitats in Katmai National Park, Alaska
AN ABSTRACT OF THE THESIS OF Kaleigh Spickerman for the degree of Master of Science in Botany and Plant Pathology presented on June 11, 2015 Title: Lichen Functional Trait Variation Along an East-West Climatic Gradient in Oregon and Among Habitats in Katmai National Park, Alaska Abstract approved: ______________________________________________________ Bruce McCune Functional traits of vascular plants have been an important component of ecological studies for a number of years; however, in more recent times vascular plant ecologists have begun to formalize a set of key traits and universal system of trait measurement. Many recent studies hypothesize global generality of trait patterns, which would allow for comparison among ecosystems and biomes and provide a foundation for general rules and theories, the so-called “Holy Grail” of ecology. However, the majority of these studies focus on functional trait patterns of vascular plants, with a minority examining the patterns of cryptograms such as lichens. Lichens are an important component of many ecosystems due to their contributions to biodiversity and their key ecosystem services, such as contributions to mineral and hydrological cycles and ecosystem food webs. Lichens are also of special interest because of their reliance on atmospheric deposition for nutrients and water, which makes them particularly sensitive to air pollution. Therefore, they are often used as bioindicators of air pollution, climate change, and general ecosystem health. This thesis examines the functional trait patterns of lichens in two contrasting regions with fundamentally different kinds of data. To better understand the patterns of lichen functional traits, we examined reproductive, morphological, and chemical trait variation along precipitation and temperature gradients in Oregon. -
H. Thorsten Lumbsch VP, Science & Education the Field Museum 1400
H. Thorsten Lumbsch VP, Science & Education The Field Museum 1400 S. Lake Shore Drive Chicago, Illinois 60605 USA Tel: 1-312-665-7881 E-mail: [email protected] Research interests Evolution and Systematics of Fungi Biogeography and Diversification Rates of Fungi Species delimitation Diversity of lichen-forming fungi Professional Experience Since 2017 Vice President, Science & Education, The Field Museum, Chicago. USA 2014-2017 Director, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. Since 2014 Curator, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. 2013-2014 Associate Director, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. 2009-2013 Chair, Dept. of Botany, The Field Museum, Chicago, USA. Since 2011 MacArthur Associate Curator, Dept. of Botany, The Field Museum, Chicago, USA. 2006-2014 Associate Curator, Dept. of Botany, The Field Museum, Chicago, USA. 2005-2009 Head of Cryptogams, Dept. of Botany, The Field Museum, Chicago, USA. Since 2004 Member, Committee on Evolutionary Biology, University of Chicago. Courses: BIOS 430 Evolution (UIC), BIOS 23410 Complex Interactions: Coevolution, Parasites, Mutualists, and Cheaters (U of C) Reading group: Phylogenetic methods. 2003-2006 Assistant Curator, Dept. of Botany, The Field Museum, Chicago, USA. 1998-2003 Privatdozent (Assistant Professor), Botanical Institute, University – GHS - Essen. Lectures: General Botany, Evolution of lower plants, Photosynthesis, Courses: Cryptogams, Biology -
Habitat Quality and Disturbance Drive Lichen Species Richness in a Temperate Biodiversity Hotspot
Oecologia (2019) 190:445–457 https://doi.org/10.1007/s00442-019-04413-0 COMMUNITY ECOLOGY – ORIGINAL RESEARCH Habitat quality and disturbance drive lichen species richness in a temperate biodiversity hotspot Erin A. Tripp1,2 · James C. Lendemer3 · Christy M. McCain1,2 Received: 23 April 2018 / Accepted: 30 April 2019 / Published online: 15 May 2019 © Springer-Verlag GmbH Germany, part of Springer Nature 2019 Abstract The impacts of disturbance on biodiversity and distributions have been studied in many systems. Yet, comparatively less is known about how lichens–obligate symbiotic organisms–respond to disturbance. Successful establishment and development of lichens require a minimum of two compatible yet usually unrelated species to be present in an environment, suggesting disturbance might be particularly detrimental. To address this gap, we focused on lichens, which are obligate symbiotic organ- isms that function as hubs of trophic interactions. Our investigation was conducted in the southern Appalachian Mountains, USA. We conducted complete biodiversity inventories of lichens (all growth forms, reproductive modes, substrates) across 47, 1-ha plots to test classic models of responses to disturbance (e.g., linear, unimodal). Disturbance was quantifed in each plot using a standardized suite of habitat quality variables. We additionally quantifed woody plant diversity, forest density, rock density, as well as environmental factors (elevation, temperature, precipitation, net primary productivity, slope, aspect) and analyzed their impacts on lichen biodiversity. Our analyses recovered a strong, positive, linear relationship between lichen biodiversity and habitat quality: lower levels of disturbance correlate to higher species diversity. With few exceptions, additional variables failed to signifcantly explain variation in diversity among plots for the 509 total lichen species, but we caution that total variation in some of these variables was limited in our study area. -
One Hundred New Species of Lichenized Fungi: a Signature of Undiscovered Global Diversity
Phytotaxa 18: 1–127 (2011) ISSN 1179-3155 (print edition) www.mapress.com/phytotaxa/ Monograph PHYTOTAXA Copyright © 2011 Magnolia Press ISSN 1179-3163 (online edition) PHYTOTAXA 18 One hundred new species of lichenized fungi: a signature of undiscovered global diversity H. THORSTEN LUMBSCH1*, TEUVO AHTI2, SUSANNE ALTERMANN3, GUILLERMO AMO DE PAZ4, ANDRÉ APTROOT5, ULF ARUP6, ALEJANDRINA BÁRCENAS PEÑA7, PAULINA A. BAWINGAN8, MICHEL N. BENATTI9, LUISA BETANCOURT10, CURTIS R. BJÖRK11, KANSRI BOONPRAGOB12, MAARTEN BRAND13, FRANK BUNGARTZ14, MARCELA E. S. CÁCERES15, MEHTMET CANDAN16, JOSÉ LUIS CHAVES17, PHILIPPE CLERC18, RALPH COMMON19, BRIAN J. COPPINS20, ANA CRESPO4, MANUELA DAL-FORNO21, PRADEEP K. DIVAKAR4, MELIZAR V. DUYA22, JOHN A. ELIX23, ARVE ELVEBAKK24, JOHNATHON D. FANKHAUSER25, EDIT FARKAS26, LIDIA ITATÍ FERRARO27, EBERHARD FISCHER28, DAVID J. GALLOWAY29, ESTER GAYA30, MIREIA GIRALT31, TREVOR GOWARD32, MARTIN GRUBE33, JOSEF HAFELLNER33, JESÚS E. HERNÁNDEZ M.34, MARÍA DE LOS ANGELES HERRERA CAMPOS7, KLAUS KALB35, INGVAR KÄRNEFELT6, GINTARAS KANTVILAS36, DOROTHEE KILLMANN28, PAUL KIRIKA37, KERRY KNUDSEN38, HARALD KOMPOSCH39, SERGEY KONDRATYUK40, JAMES D. LAWREY21, ARMIN MANGOLD41, MARCELO P. MARCELLI9, BRUCE MCCUNE42, MARIA INES MESSUTI43, ANDREA MICHLIG27, RICARDO MIRANDA GONZÁLEZ7, BIBIANA MONCADA10, ALIFERETI NAIKATINI44, MATTHEW P. NELSEN1, 45, DAG O. ØVSTEDAL46, ZDENEK PALICE47, KHWANRUAN PAPONG48, SITTIPORN PARNMEN12, SERGIO PÉREZ-ORTEGA4, CHRISTIAN PRINTZEN49, VÍCTOR J. RICO4, EIMY RIVAS PLATA1, 50, JAVIER ROBAYO51, DANIA ROSABAL52, ULRIKE RUPRECHT53, NORIS SALAZAR ALLEN54, LEOPOLDO SANCHO4, LUCIANA SANTOS DE JESUS15, TAMIRES SANTOS VIEIRA15, MATTHIAS SCHULTZ55, MARK R. D. SEAWARD56, EMMANUËL SÉRUSIAUX57, IMKE SCHMITT58, HARRIE J. M. SIPMAN59, MOHAMMAD SOHRABI 2, 60, ULRIK SØCHTING61, MAJBRIT ZEUTHEN SØGAARD61, LAURENS B. SPARRIUS62, ADRIANO SPIELMANN63, TOBY SPRIBILLE33, JUTARAT SUTJARITTURAKAN64, ACHRA THAMMATHAWORN65, ARNE THELL6, GÖRAN THOR66, HOLGER THÜS67, EINAR TIMDAL68, CAMILLE TRUONG18, ROMAN TÜRK69, LOENGRIN UMAÑA TENORIO17, DALIP K.