Organic Synthesis-Where Now?
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Significance and Implications of Vitamin B-12 Reaction Shema- ETH ZURICH VARIANT: Mechanisms and Insights
Taylor University Pillars at Taylor University Student Scholarship: Chemistry Chemistry and Biochemistry Fall 2019 Significance and Implications of Vitamin B-12 Reaction Shema- ETH ZURICH VARIANT: Mechanisms and Insights David Joshua Ferguson Follow this and additional works at: https://pillars.taylor.edu/chemistry-student Part of the Analytical Chemistry Commons, Inorganic Chemistry Commons, Organic Chemistry Commons, Other Chemistry Commons, and the Physical Chemistry Commons CHEMISTRY THESIS SIGNIFICANCE AND IMPLICATIONS OF VITAMIN B-12 REACTION SCHEMA- ETH ZURICH VARIANT: MECHANISMS AND INSIGHTS DAVID JOSHUA FERGUSON 2019 2 Table of Contents: Chapter 1 6 Chapter 2 17 Chapter 3 40 Chapter 4 59 Chapter 5 82 Chapter 6 118 Chapter 7 122 Appendix References 3 Chapter 1 A. INTRODUCTION. Vitamin B-12 otherwise known as cyanocobalamin is a compound with synthetic elegance. Considering how it is composed of an aromatic macrocyclic corrin there are key features of this molecule that are observed either in its synthesis of in the biochemical reactions it plays a role in whether they be isomerization reactions or transfer reactions. In this paper the focus for the discussion will be on the history, chemical significance and total synthesis of vitamin B12. Even more so the paper will be concentrated one of the two variants of the vitamin B-12 synthesis, namely the ETH Zurich variant spearheaded by Albert Eschenmoser.Examining the structure as a whole it is observed that a large portion of the vitamin B12 is a corrin structure with a cobalt ion in the center of the macrocyclic part, and that same cobalt ion has cyanide ligands. -
New Cyclophanes As Supramolecular Scaffolds: the Synthesis of Tribenzo-1,4,7-Triazacyclononatriene
Loyola University Chicago Loyola eCommons Dissertations Theses and Dissertations 2010 New Cyclophanes as Supramolecular Scaffolds: The Synthesis of Tribenzo-1,4,7-Triazacyclononatriene. Andria M. Panagopoulos Loyola University Chicago Follow this and additional works at: https://ecommons.luc.edu/luc_diss Part of the Biochemistry Commons Recommended Citation Panagopoulos, Andria M., "New Cyclophanes as Supramolecular Scaffolds: The Synthesis of Tribenzo-1,4,7-Triazacyclononatriene." (2010). Dissertations. 88. https://ecommons.luc.edu/luc_diss/88 This Dissertation is brought to you for free and open access by the Theses and Dissertations at Loyola eCommons. It has been accepted for inclusion in Dissertations by an authorized administrator of Loyola eCommons. For more information, please contact [email protected]. This work is licensed under a Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 License. Copyright © 2010 Andria M. Panagopoulos LOYOLA UNIVERSITY CHICAGO NEW CYCLOPHANES AS SUPRAMOLECULAR SCAFFOLDS: THE SYNTHESIS OF TRIBENZO-1,4,7-TRIAZACYCLONONATRIENE A DISSERTATION SUBMITTED TO THE FACULTY OF THE GRADUATE SCHOOL IN CANDIDACY FOR THE DEGREE OF DOCTOR OF PHILOSOPHY PROGRAM IN CHEMISTRY BY ANDRIA M. PANAGOPOULOS CHICAGO, ILLINOIS AUGUST 2010 Copyright by Andria M. Panagopoulos, 2010 All rights reserved ACKNOWLEDGEMENTS I would like to sincerely thank my advisor, Daniel P. Becker, Ph.D. for all his support and guidance throughout the years. I have learned so much from you, not only about chemistry, but about myself and for that I thank you. I would also like to thank my friends and family. You guys have stood by my side, encouraged me and supported me. I could not have completed this without your love and support. -
Brittain-DR-1965-Phd-Thesis.Pdf
POLYMETHYLENE PYRIDINES , A thesis submitted by David Robert Brittain in partial fulfilment of the requirements for the degree of DOCTOR OP PHILOSOPHY in the University of London Organic Chemistry Department, dune, 1965. Imperial College, LONDON, S.W.7. ABSTRACT This thesis describes a series of attempts to syn- thesise 2,5- and 1,4-polymethylene bridged pyridines. Nuclear magnetic resonance theory predicts that protons, which are held directly over an aromatic ring, will be abnormally shielded compared with protons in aliphatic straight-chain hydrocarbons. This prediction has been verified for the central methylene protons of paracyclo- phanes. The degree of shielding, expressed in terms of the distance from the aromatic ring, is a measure of the induced ring current and hence the aromaticity of the benzene ring. Similar measurements upon 2,5- or 1,4— polymethylene bridged pyridines would make it possible to determine the degree of aromaticity of the pyridine ring relative to benzene. A review of the subject of aromaticity is presented in which special reference has been made to its inter- pretation by nuclear magnetic resonance. The synthetic work has not been brougL.t to a truly satisfactory conclusion. However, the synthetic routes to 2,5-dialkylpyridines have been thoroughly investigated and a wide variety of such compounds prepared. The functional groups at the ends of the alkyl chains have been varied in an effort to produce a derivative which would cyclise to give a 2,5-bridged pyridine. The attempted intramolecular oxidative coupling of 2,5-dihex- 51 -ynylpyridine received much attention. In the attempts to obtain a 1,4-bridged pyridine, two tricyclic compounds, each containing two quaternised pyridine rings linked by polymethylene chains, were obtained. -
3.1.4 Droplet-Based Microfluidics
Rodriguez Garcia, Marc (2016) Engineering the transition from non-living to living matter. PhD thesis. https://theses.gla.ac.uk/7605/ Copyright and moral rights for this work are retained by the author A copy can be downloaded for personal non-commercial research or study, without prior permission or charge This work cannot be reproduced or quoted extensively from without first obtaining permission in writing from the author The content must not be changed in any way or sold commercially in any format or medium without the formal permission of the author When referring to this work, full bibliographic details including the author, title, awarding institution and date of the thesis must be given Enlighten: Theses https://theses.gla.ac.uk/ [email protected] Engineering the transition from non-living to living matter Marc Rodríguez Garcia A thesis submitted to the University of Glasgow for the degree of Doctor of Philosophy School of Chemistry College of Science and Engineering August 2016 A tota la meva família, per haver-me ajudat a arribar fins aquí. Però sobretot als meus pares, per estar tant a prop malgrat la distància. I en especial a la Nuria, per ser el motiu que em fa tirar endavant. “The good thing about science is that it's true whether or not you believe in it.” -Neil deGrasse Tyson Acknowledgements 1 Acknowledgements This project was carried out between September 2012 and June 2016 in the group of Prof Leroy Cronin in the School of Chemistry at the University of Glasgow. I have received much help and support from many colleagues and friends. -
Searching for Nucleic Acid Alternatives
MODIFIED OLIGONUCLEOTIDES 836 CHIMIA 2005, 59, No. 11 Chimia 59 (2005) 836–850 © Schweizerische Chemische Gesellschaft ISSN 0009–4293 Searching for Nucleic Acid Alternatives Albert Eschenmoser* Abstract: “Back of the envelope” methods have their place in experimental chemical research; they are effective mediators in the generation of research ideas, for instance, the design of molecular structures. Their qualitative character is part of their strength, rather than a drawback for the role they have to play. Qualitative conformational analysis of oligonucleotide and other oligomer systems on the level of idealized conformations is one such method; it has played a helpful role in our work on the chemical etiology of nucleic acid structure. This article, while giving a short overview of that work, shows how. Keywords: Conformational analysis of oligonucleotides · Nucleic acid analogs · Oligonucleodipeptides · p-RNA · TNA · Watson-Crick base-pairing Chemists understand by comparing, not ‘ab structural or transformational complexity, we know today as the molecular basis of initio’. To perceive and to create opportuni- serve the purpose of creating opportunities genetic function. The specific property to ties for drawing conclusions on the basis of to compare the behavior of complex sys- be compared in this work is a given nucleic comparisons is the organic chemist’s way tems with that of simpler ones. Enzymic re- acid alternative’s capacity for informational of interpreting and exploring the world at actions and enzyme models are examples. -
Robert Burns Woodward
The Life and Achievements of Robert Burns Woodward Long Literature Seminar July 13, 2009 Erika A. Crane “The structure known, but not yet accessible by synthesis, is to the chemist what the unclimbed mountain, the uncharted sea, the untilled field, the unreached planet, are to other men. The achievement of the objective in itself cannot but thrill all chemists, who even before they know the details of the journey can apprehend from their own experience the joys and elations, the disappointments and false hopes, the obstacles overcome, the frustrations subdued, which they experienced who traversed a road to the goal. The unique challenge which chemical synthesis provides for the creative imagination and the skilled hand ensures that it will endure as long as men write books, paint pictures, and fashion things which are beautiful, or practical, or both.” “Art and Science in the Synthesis of Organic Compounds: Retrospect and Prospect,” in Pointers and Pathways in Research (Bombay:CIBA of India, 1963). Robert Burns Woodward • Graduated from MIT with his Ph.D. in chemistry at the age of 20 Woodward taught by example and captivated • A tenured professor at Harvard by the age of 29 the young... “Woodward largely taught principles and values. He showed us by • Published 196 papers before his death at age example and precept that if anything is worth 62 doing, it should be done intelligently, intensely • Received 24 honorary degrees and passionately.” • Received 26 medals & awards including the -Daniel Kemp National Medal of Science in 1964, the Nobel Prize in 1965, and he was one of the first recipients of the Arthur C. -
Tetrazinebox: a Structurally Transformative Toolbox Qing-Hui Guo, Jiawang Zhou, Haochuan Mao, Yunyan Qiu, Minh T
pubs.acs.org/JACS Article TetrazineBox: A Structurally Transformative Toolbox Qing-Hui Guo, Jiawang Zhou, Haochuan Mao, Yunyan Qiu, Minh T. Nguyen, Yuanning Feng, Jiaqi Liang, Dengke Shen, Penghao Li, Zhichang Liu, Michael R. Wasielewski, and J. Fraser Stoddart* Cite This: J. Am. Chem. Soc. 2020, 142, 5419−5428 Read Online ACCESS Metrics & More Article Recommendations *sı Supporting Information ABSTRACT: Synthetic macrocycles capable of undergoing allosteric regulation by responding to versatile external stimuli are the subject of increasing attention in supramolecular science. Herein, we report a structurally transformative tetracationic cyclophane containing two 3,6-bis(4-pyridyl)-l,2,4,5-tetrazine (4-bptz) units, which are linked together by two p-xylylene bridges. The cyclophane, which possesses modular redox states and structural post-modifications, can undergo two reversibly consecutive two-electron reductions, affording first its bisradical dicationic counterpart, and then subsequently the fully reduced species. Furthermore, one single-parent cyclophane can afford effectively three other new analogs through box- to-box cascade transformations, taking advantage of either reductions or an inverse electron-demand Diels−Alder (IEDDA) reaction. While all four new tetracationic cyclophanes adopt rigid and symmetric box-like conformations, their geometries in relation to size, shape, electronic properties, and binding affinities toward polycyclic aromatic hydrocarbons can be readily regulated. This structurally transformative tetracationic cyclophane performs a variety of new tasks as a result of structural post-modifications, thus serving as a toolbox for probing the radical properties and generating rapidly a range of structurally diverse cyclophanes by efficient divergent syntheses. This research lays a solid foundation for the introduction of the structurally transformative tetracationic cyclophane into the realm of mechanically interlocked molecules and will provide a toolbox to construct and operate intelligent molecular machines. -
Acta 20, 2009
07_Eschenmoser(OK) Gabri_dis:Layout 1 25/09/09 11:07 Pagina 181 Scientific Insights into the Evolution of the Universe and of Life Pontifical Academy of Sciences, Acta 20, 2009 www.pas.va/content/dam/accademia/pdf/acta20/acta20-eschenmoser.pdf THE SEARCH FOR THE CHEMISTRY OF LIFE’S ORIGIN ALBERT ESCHENMOSER A central postulate of contemporary natural science states that life emerged on Earth (or elsewhere) through a transition of chemical matter from non-living to living. The transition is seen as a contingent consequence of the second law of thermodynamics and the chemical properties of matter by one group of scientists, and as an imperative of that law and those prop- erties according to the belief of others. Chemical matter is postulated to have been capable of organizing itself out of disorder by channeling exergonic geochemical reactions into reaction networks that had a dynamic structure with kinetic (as opposed to thermodynamic) stability and were driven by autocatalytic molecular replication cycles. The postulate implicates that such chemical systems eventually became self-sustaining (capable of exploit- ing environmental sources for reconstituting itself), adaptive (capable of reacting to physical or chemical changes in the environment such that sur- vival as a system is maintained) and – by operating in compartments – capa- ble of evolving. From this perspective, life’s origin is seen as a seamless tran- sition from self-ordering chemical reactions to self-sustaining chemical sys- tems that are capable of Darwinian evolution [1]. Figure 1 delineates – in terms of a ‘conceptual cartoon’ – such a programmatic view in more detail. Evidence from paleontology, biology, geology and planetary science posits the appearance of life on Earth into a period of 3 to 4 billion years ago. -
JUN 1 51998 Science
Efforts Toward the Syntheses of Natural Products: Part A: Paeoniflorin Part B: (+)-Taxusin A thesis presented by Rebecca J. Carazza B.S. Chemistry University of Massachusetts, Amherst, 1993 Submitted to the Department of Chemistry in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Chemistry at the Massachusetts Institute of Technology June 1998 © 1998 Massachusetts Institute of Technology. All rights reserved. SinatureofAuthor: SignatureT- -~- -- .. -uof -Author: -- I- ----- D4pdrtment o('ihemistry May 26, 1998 Certified by: ,Scott C. Virgil Thesis Advisor Acceuted bv: Dietmar Seyferth Chairman, Departmental Committee on Graduate Students O-V .Z\ . JUN 1 51998 Science UR PAES This doctoral thesis has been examined by a committee of the Department of Chemistry as follows: Professor Rick L. Danheiser - Chairman Professor Scott C. Virgil / Th/sis Supervisor Professor Peter H. Seeberger Efforts Toward the Syntheses of Natural Products: Part A: Paeoniflorin Part B: (+)-Taxusin by Rebecca J. Carazza Submitted to the Department of Chemistry on May 26, 1998 in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy in Chemistry Massachusetts Institute of Technology ABSTRACT Part A Efforts toward the synthesis of the monoterpene glycoside paeoniflorin (1) are discussed. Optimization of the previous synthetic route was successful. Synthesis of the key cc-diazo intermediate 30 was achieved and the construction of the carbocyclic frame was completed. Key reactions of the strategy involve a ring contraction via a Wolff rearrangement, and formation of the lactone 78 which undergoes diisobutylaluminum hydride reduction followed by acid catalyzed cyclization to the paeoniflorin ring system 80. A new synthetic strategy was initiated to prepare the key [3.2.1]bicyclooctanone 81 using a palladium mediated olefin cyclization of the acyloin substrate 82. -
REVIEW RNA: Prebiotic Product, Or Biotic Invention?
CHEMISTRY & BIODIVERSITY – Vol. 4 (2007) 721 REVIEW RNA: Prebiotic Product, or Biotic Invention? by Carole Anastasi, Fabien F. Buchet, Michael A. Crowe, Alastair L. Parkes, MatthewW. Powner , James M. Smith, and John D. Sutherland* School of Chemistry, University of Manchester, Oxford Road, Manchester M139PL, UK (phone: ( þ44)1612754614; fax: (þ44)1612754939; e-mail: [email protected]) Spectacular advances in structural and molecular biology have added support to the RNA world hypothesis, and provide a mandate for chemistry to explain how RNA might have been generated prebiotically on the early earth. Difficulties in achieving a prebiotically plausible synthesis of RNA, however, have led many to ponder the question posed in the title of this paper. Herein, we review recent experimental work on the assembly of potential RNA precursors, focusing on methods for stereoselective CÀC bond construction by aldolisation and related processes. This chemistry is presented in the context of a broader picture of the potential constitutional self-assembly of RNA. Finally, the relative accessibility of RNA and alternative nucleic acids is considered. Introduction. – A robust, prebiotically plausible synthesis of RNA, if achieved, will dramatically strengthen the case for the RNA world hypothesis [1][2]. Despite nearly half a century of effort, however, the prospects for such a synthesis have appeared somewhat remote. Difficulties in the generation and oligomerisation of activated nucleotides have led to suggestions that RNA might have been preceded by a simpler informational macromolecule [1–3]. It has been suggested that a biology based on this simpler nucleic acid might have then invented RNA. According to this scheme, functional superiority of RNA would have subsequently driven the transition to a biology based on RNA, and the RNA world would have been born (Fig. -
Robert Burns Woodward 1917–1979
NATIONAL ACADEMY OF SCIENCES ROBERT BURNS WOODWARD 1917–1979 A Biographical Memoir by ELKAN BLOUT Any opinions expressed in this memoir are those of the author and do not necessarily reflect the views of the National Academy of Sciences. Biographical Memoirs, VOLUME 80 PUBLISHED 2001 BY THE NATIONAL ACADEMY PRESS WASHINGTON, D.C. ROBERT BURNS WOODWARD April 10, 1917–July 8, 1979 BY ELKAN BLOUT OBERT BURNS WOODWARD was the preeminent organic chemist Rof the twentieth century. This opinion is shared by his colleagues, students, and by other distinguished chemists. Bob Woodward was born in Boston, Massachusetts, and was an only child. His father died when Bob was less than two years old, and his mother had to work hard to support her son. His early education was in the Quincy, Massachusetts, public schools. During this period he was allowed to skip three years, thus enabling him to finish grammar and high schools in nine years. In 1933 at the age of 16, Bob Woodward enrolled in the Massachusetts Institute of Technology to study chemistry, although he also had interests at that time in mathematics, literature, and architecture. His unusual talents were soon apparent to the MIT faculty, and his needs for individual study and intensive effort were met and encouraged. Bob did not disappoint his MIT teachers. He received his B.S. degree in 1936 and completed his doctorate in the spring of 1937, at which time he was only 20 years of age. Immediately following his graduation Bob taught summer school at the University of Illinois, but then returned to Harvard’s Department of Chemistry to start a productive period with an assistantship under Professor E. -
Enantiomeric Chromatographic Separations and Ionic Liquids Jie Ding Iowa State University
Iowa State University Capstones, Theses and Retrospective Theses and Dissertations Dissertations 2005 Enantiomeric chromatographic separations and ionic liquids Jie Ding Iowa State University Follow this and additional works at: https://lib.dr.iastate.edu/rtd Part of the Analytical Chemistry Commons, Medicinal and Pharmaceutical Chemistry Commons, Medicinal Chemistry and Pharmaceutics Commons, Medicinal-Pharmaceutical Chemistry Commons, and the Organic Chemistry Commons Recommended Citation Ding, Jie, "Enantiomeric chromatographic separations and ionic liquids " (2005). Retrospective Theses and Dissertations. 1725. https://lib.dr.iastate.edu/rtd/1725 This Dissertation is brought to you for free and open access by the Iowa State University Capstones, Theses and Dissertations at Iowa State University Digital Repository. It has been accepted for inclusion in Retrospective Theses and Dissertations by an authorized administrator of Iowa State University Digital Repository. For more information, please contact [email protected]. Enantiomeric chromatographic separations and ionic liquids by Jie Ding A dissertation submitted to the graduate faculty in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY Major: Analytical Chemistry Program of Study Committee: Daniel W. Armstrong, Major Professor Lee Anne Willson Robert S. Houk Jacob W. Petrich Richard C. Larock Iowa State University Ames, Iowa 2005 Copyright © Jie Ding, 2005. All rights reserved. UMI Number: 3200412 Copyright 2005 by Ding, Jie All rights reserved. INFORMATION TO USERS The quality of this reproduction is dependent upon the quality of the copy submitted. Broken or indistinct print, colored or poor quality illustrations and photographs, print bleed-through, substandard margins, and improper alignment can adversely affect reproduction. In the unlikely event that the author did not send a complete manuscript and there are missing pages, these will be noted.