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Thesis Reference Thesis Développement d'une méthodologie et optimisation d'un test colorimétrique pour la recherche de substances antimalariques d'origine végétale VARGAS, Sandra Abstract Ce travail présente une méthodologie pour la recherche de substances antimalariques d'origine naturelle. Elle implique l'utilisation des deux outils développés pour cette étude : un outil qualitatif (β-test) et une base de données (Track2nd). Le β-test est un test colorimétrique basé sur l'étude de la synthèse de la β-hématine, réaction spécifique au Plasmodium. Sa mise en place et son optimisation sur des extraits et des substances d'origine végétale permet d'avoir à disposition un test facile, rapide et peu couteux. Track2nd est un portail d'informations sur des plantes incluant des paramètres comme l'activité biologique et l'utilisation en médecine traditionnelle. Ces deux outils combinés permettent une première sélection d'extraits de plantes destinés à être testés sur le parasite par des instituts collaborateurs. Une fois la confirmation d'activité obtenue, un bioguidage avec le β-test est effectué afin d'isoler puis d'identifier le composé inhibiteur de la synthèse de la β-hématine. Reference VARGAS, Sandra. Développement d'une méthodologie et optimisation d'un test colorimétrique pour la recherche de substances antimalariques d'origine végétale. Thèse de doctorat : Univ. Genève, 2009, no. Sc. 4132 URN : urn:nbn:ch:unige-127440 DOI : 10.13097/archive-ouverte/unige:12744 Available at: http://archive-ouverte.unige.ch/unige:12744 Disclaimer: layout of this document may differ from the published version. 1 / 1 UNIVERSITE DE GENEVE FACULTE DES SCIENCES Section des Sciences Pharmaceutiques Laboratoire de Pharmacognosie et de Phytochimie Prof. Kurt Hostettmann Développement d'une méthodologie et optimisation d'un test colorimétrique pour la recherche de substances antimalariques d'origine végétale THESE Présentée à la Faculté des Sciences de l’Université de Genève Pour obtenir le grade de Docteur ès sciences, mention interdisciplinaire par Sandra Vargas de Meyrin (GE) Thèse No4132 Atelier d’impression ReproMail – Uni Mail Genève 2009 Remerciements Mes remerciements s’adressent tout d’abord à mon directeur de thèse, Monsieur le Professeur Kurt Hostettmann, pour m’avoir accueillie dans son groupe de recherche de renommée internationale et pour les conditions de travail de grande qualité dont j’ai pu bénéficier. Je le remercie également pour m’avoir permis d’intégrer pendant deux mois le laboratoire de Madame le Dr. Livia Vivas au sein de la London School of Hygien and Tropical Medicine (LSHTM), afin de parfaire mes connaissances concernant les tests in vitro avec P. falciparum. C’est également pour la confiance qu’il m’a accordée en me permettant de présenter mes résultats à différents congrès scientifiques en Suisse mais également en Indonésie et au Botswana que je lui présente ma profonde reconnaissance. Ma gratitude va également à mes superviseurs techniques. Ce sujet n’aurait pas vu le jour sans la détermination de Monsieur le Dr. Jean-Robert Ioset, que je remercie pour son encadrement lors de la mise en place du test, pour les nombreuses réunions et pour son optimisme. Un grand merci à Madame le Dr. Anne-Emmanuelle Hay pour son encadrement, son dynamisme, sa participation aux screenings ainsi que pour son soutien. Mes remerciements s’adressent aussi à Madame le Dr. Karine Ndjoko pour ses précieux conseils lors de la rédaction. Mes remerciement sincères s’adressent également à mon jury de thèse : Monsieur le Professeur Drissa Diallo, Chef du Département Médecine Traditionnelle (DMT) à l’Institut National de Recherche en Santé Publique (INRSP) de Bamako au Mali, Monsieur le Professeur Louis Maes du « Laboratory for Microbiology, Parasitology and Hygiene (LMPH) » de l’Université d’Antwerp en Belgique et Monsieur le Dr. Jean-Robert Ioset de l’organisation « Drugs for Neglected Diseases initiative » (DNDi) pour avoir accepté de juger mon travail, pour leurs remarques pertinentes et pour leur déplacement lors de la soutenance de thèse. Je remercie sincèrement Monsieur le Professeur Pierre-Alain Carrupt pour avoir accepté d’être membre du jury interne et pour avoir présider ce jury. Ce travail n’aurait pas pu être achevé sans les collaborations suivantes : L’Institut Tropical Suisse (STI) à Bâle, Monsieur le Professeur Reto Brun et plus particulièrement Monsieur le Dr. Sergio Wittlin pour les résultats in vitro sur P. falciparum de toutes les plantes sélectionnées lors de ce travail. La fondation Oswaldo Cruz (FioCruz) du Brésil, particulièrement Madame le Professeur Milena B. Soares pour avoir testé in vitro sur P. falciparum les fractions et substances pures provenant de Loiseleuria procumbens. Madame le Dr. Livia Vivas du LSHTM qui m’a accueilli dans son laboratoire et m’a permis de pratiquer les tests in vitro sur P. falciparum. Un grand merci à Mlle Emily Bongart et Mlle Eloise Thompson pour leur aide et pour leurs conseils au laboratoire. Monsieur le Dr. Serge Rudaz du Laboratoire d’Analyse Pharmaceutique de l’Université de Genève, qui a toujours été disponible afin de discuter du traitement des résultats. i Ma profonde reconnaissance va également aux deux étudiantes qui ont participé activement à ce travail dans le cadre de leur travail de Master en Pharmacie. Mlle Simone Egger et Mlle Aziza Ben Zayed qui par leur détermination ont énormément participé à la mise en place du β-test ainsi qu’au premier bioguidage. Je remercie également mes anciens collègues du Laboratoire de Pharmacognosie et Phytochimie : En particulier, Daphné : « Avec quelques semaines de décalage, on peut dire qu’on a vécu notre thèse en même temps ». Frédéric : « Il est vrai que certaine fois, on peut voir les choses sous un autre angle ». Sylvian : « Un véritable soutien optimiste ». Je les remercie pour les échanges scientifiques mais aussi pour nos fous rires et leur amitié. Anne- Emmanuelle pour sa bonne humeur, Martine pour le vendredi, Philippe C. pour nos discussions mais aussi Caroline, Anne-Laure, Fan, Karine, Gaetan, Trixie, Claudia, Raimana, Karin, Hakim, Aude et Nadine. Finalement, un grand merci à mes parents, ma sœur, mon frère et mes amis pour m’avoir encouragée et soutenue tout au long de ce travail. ii Communications scientifiques Ce travail a été effectué d’octobre 2005 à juin 2009 au Laboratoire de Pharmacognosie et Phytochimie, Section Sciences Pharmaceutiques à l’Université de Genève-Université de Lausanne, sous la direction du Prof. Dr. Kurt Hostettmann. Certains aspects de la présente recherche ont abouti à des présentations lors de congrès internationaux sous forme de posters ou de communications orales et à la publication d’articles. Posters Martin, F. Hay, A.E., Vargas, S., Gupta, M.P. and Hostettmann, K., New C- glucosylxanthones forme the stem of Arrabidaea patellifera (Bignoniaceae). International Symposium by IOCD, “Biology, Chemistry, Pharmacology and Clinical studies of Asian plants”, Surabaya, Indonesia. April 2007 Vargas, S., Ioset, J.-R., Hay, A.-E, Ndjoko K., Vivas, L., Hostettmann, K., A screening assay based on inhibition of hematin polymerization for detecting new antimalarial drugs: Application to plant extracts, International Symposium by IOCD, “Biology, Chemistry, Pharmacology and Clinical studies of Asian plants”, Surabaya, Indonesia. April 2007 Vargas, S., Ioset, J.-R., Hay, A.-E, Ndjoko K., Vivas, L., Hostettmann, K., β-hematin inhibition assay: A tool for detecting new antimalarial drugs from plants, IOCD/ISDNP Symposium ‘Natural Products: Unlimited Resources for the Development of Drugs, Cosmetics and Food.’, Kasane, Botswana, February 2008. Communications orales Vargas, S., Recherche de composés anti-malariques, Test colorimétrique basé sur l’inhibition de la polymérisation de l’hématine, 22ème Séminaire en Sciences Pharmaceutiques, « Le potentiel des plantes dans les maladies parasitaires tropicales », Zermatt, Suisse. Octobre 2007 Publications Simões-Pires, C., Vargas S., Marston A., Ioset J.R., Paulo M.Q., Matheeussen A. ; Maes L., Ellagic acid derivatives from Syzygium cumini stem bark: investigation of their antiplasmodial activity, Natural Product Communications, 2009 (4), Soumis Vargas, S., Ioset, J.-R., Hay, A.-E, Ndjoko, K., Brun, R., Wittlin, S., Hostettmann, K., The adaptation and validation of use of a chemical assay based on the inhibition of the beta-hematin to the screening of natural products: a simple method for the detection and selectively isolation of novel antimalarial compounds from plant mixtures. Soumis iii Abréviations et Symboles [3H]-Hypoxanthine Hypoxanthine radiomarquée au tritium δ Déplacement chimique en RMN η Rendement λmax Longueur d’onde du maxima d’absorption ABS Absorption ACN Acétonitrile CD3OD Methanol deutéré CI50 Concentration lorsque l’inhibition est équivalente à 50 % COSY Correlation homonucléaire d Doublet DAD Detecteur à barettes d’iodes dd Doublet de doublet DDT Dichloro-diphenyl-trichloroéthane DMSO Dimethylsulfoxide DMSO-d6 Dimethylsulfoxide deutéré DNDi Drugs for Neglected Diseases initiative (organisation à but non-lucratif ) DPPH 1,1- diphenyl-2-picrylhydrazyl ELISA Dosage d'immunosorption liée à enzyme (Enzyme-linked immunosorbent assay) ESI Ionisation par électrospray et al. « et autres », abbrévitation du mot latin et alii Fe(III)PPIX Fer (III) lié à la protoporphyrine IX FT Transformée de Fourier GSH Glutathion HMBC Correlation hétéronucléaire à liaisons multiples HPLC Chromatographie liquide à haute pression HR-MS Spéctrométrie de masse à haute résolution HSQC Corrélation hétéronuclaire
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