Malaria Polyclonal B Cell Activator Activation of the Memory

Total Page:16

File Type:pdf, Size:1020Kb

Malaria Polyclonal B Cell Activator Activation of the Memory Increased B Cell Survival and Preferential Activation of the Memory Compartment by a Malaria Polyclonal B Cell Activator This information is current as Daria Donati, Bobo Mok, Arnaud Chêne, Hong Xu, Mathula of October 2, 2021. Thangarajh, Rickard Glas, Qijun Chen, Mats Wahlgren and Maria Teresa Bejarano J Immunol 2006; 177:3035-3044; ; doi: 10.4049/jimmunol.177.5.3035 http://www.jimmunol.org/content/177/5/3035 Downloaded from References This article cites 35 articles, 15 of which you can access for free at: http://www.jimmunol.org/content/177/5/3035.full#ref-list-1 http://www.jimmunol.org/ Why The JI? Submit online. • Rapid Reviews! 30 days* from submission to initial decision • No Triage! Every submission reviewed by practicing scientists • Fast Publication! 4 weeks from acceptance to publication by guest on October 2, 2021 *average Subscription Information about subscribing to The Journal of Immunology is online at: http://jimmunol.org/subscription Permissions Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Email Alerts Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts The Journal of Immunology is published twice each month by The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 2006 by The American Association of Immunologists All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. The Journal of Immunology Increased B Cell Survival and Preferential Activation of the Memory Compartment by a Malaria Polyclonal B Cell Activator1 Daria Donati,2† Bobo Mok,* Arnaud Cheˆne,*† Hong Xu,† Mathula Thangarajh,‡ Rickard Glas,† Qijun Chen,§ Mats Wahlgren,* and Maria Teresa Bejarano*† Chronic malaria infection is characterized by polyclonal B cell activation, hyperglobulinemia, and elevated titers of autoantibod- ies. We have recently identified the cysteine-rich interdomain region 1␣ (CIDR1␣)ofthePlasmodium falciparum erythrocyte membrane protein 1 as a T cell-independent polyclonal B cell activator and Ig binding protein. Here, we show that, although the binding affinity of CIDR1␣ to human IgM and IgG is relatively low, B cell activation still proceeds. CIDR1␣ rescues tonsillar B cells from apoptosis, and increases the proportion of cycling cells. Comparison of the impact on naive and memory B cell compartment indicated that CIDR1␣ preferentially activates memory B lymphocytes. Analysis of the gene expression profiles Downloaded from induced by CIDR1␣ and anti-Ig activation using a cDNA microarray demonstrated a low degree of homology in the signatures imposed by both stimuli. The microarray data correlate with the functional analysis demonstrating that CIDR1␣ activates various immunological pathways and protects B cells from apoptosis. Together, the results provide evidence for a role of malaria in preferentially activating the memory B cell compartment. The polyclonal B cell activation and augmented survival induced by CIDR1␣ is of relevance for understanding the mechanisms behind the increased risk of Burkitt’s lymphoma in malaria endemic areas. The Journal of Immunology, 2006, 177: 3035–3044. http://www.jimmunol.org/ berrant immune activation induced by chronic infections sent ϳ40% of the splenocytes. Thus, IE and their constituent Ags with Plasmodium falciparum leads to polyclonal B cell could interact in the spleen with B cells displaying a variety of A activation characterized by the presence of hyperglobu- surface phenotypes, Ag-binding repertoires and signaling profiles linemia (1), elevated titers of autoantibodies (2, 3), and frequent (7). Among malarial Ags, the P. falciparum erythrocyte membrane occurrence of Burkitt’s lymphoma (4) and splenic lymphoma (5). protein 1 (PfEMP1) family of proteins often display Ig binding The mechanisms that lead to this polyclonal B cell activation are properties (8, 9). The Ig binding activity of the PfEMP1, cloned poorly understood. from two different P. falciparum strains, resides in two different by guest on October 2, 2021 The marked effect of malaria infection on B cells is related both variable domains, the Duffy binding-like domain 2␤ (DBL2␤) and to the biology of the infection, and to the nature of the malarial the cysteine-rich interdomain region 1␣ (CIDR1␣) (8). The latter Ags. P. falciparum-infected erythrocytes (IE)3 have the potential domain has been identified as a polyclonal B cell activator and an to directly interact with B cells in different anatomical sites and to Ig binding protein (IBP) (10) with a binding pattern similar to that induce B cell proliferation and differentiation into Ab-secreting of another microbial IBP, the protein A of Staphylococcus aureus cells. We have shown that a large proportion (83%) of fresh iso- (8, 10, 11). Microbial IBPs are produced by protozoa, viruses, and lates of IE bind nonimmune Igs (6), suggesting that in the periph- bacteria (12), and play important physiological roles (13). During eral blood IE could interact with B cells through their surface Igs. an infectious process, IBPs may act as an evasion mechanism to Moreover, bloodborne Ags (and thus malarial Ags related to the divert specific Ab responses (14, 15). CIDR1␣ binds to and acti- erythrocytic phase) are trapped in the spleen where B cells repre- vates purified B lymphocytes in vitro, an interaction partially me- diated through the binding to surface Ig (10). To further understand the impact of CIDR1␣ on the immune *Microbiology and Tumorbiology Center, Karolinska Institutet, †Center for Infec- system, we analyzed its effect on the dynamics of the B cell com- tious Medicine, Department of Medicine, ‡Division of Neurology R54, Karolinska § partment and compared the gene expression profiles during acti- Institutet, Karolinska University Hospital Huddinge, and Swedish Institute for In- ␣ fection Disease Control, Stockholm, Sweden vation induced by CIDR1 and the triggering of the BCR via ␣ Received for publication May 24, 2005. Accepted for publication May 25, 2006. anti-Ig. The data show that CIDR1 preferentially induces the ac- tivation of the memory B cell compartment and that this activation The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked advertisement in accordance seems to be different from the one imposed by anti-Ig treatment. with 18 U.S.C. Section 1734 solely to indicate this fact. 1 This work was supported by grants from the Swedish International Development Cooperation Agency, Barncancerfonden, the Swedish Research Council, the Swedish Materials and Methods Foundation for Strategic Research, and the Karolinska Institutet. Production of recombinant Ags 2 Address correspondence and reprint requests to Dr. Daria Donati, Center for Infec- ␣ tious Medicine, Karolinska Institutet, Karolinska University Hospital Huddinge, F59, CIDR1 , of the cloned strain FCR3S1.2var1, was cloned in the pGEX-4T SE-141 86 Stockholm, Sweden. E-mail address: [email protected] plasmid (Amersham Biosciences) and expressed in Escherichia coli 3 (BL21) as previously described (8). The CIDR1␣-GST fusion-protein, re- Abbreviations used in this paper: IE, infected erythrocyte; PfEMP1, Plasmodium ␣ falciparum erythrocyte membrane protein 1; IBP, Ig binding protein; CIDR1␣, cys- ferred to as CIDR1 , was expressed and purified according to the instruc- teine-rich interdomain region 1␣; PI, propidium iodide; XIAP, X-linked inhibitor of tions of the manufacturer. GST produced by the empty vector was used as apoptosis; APRIL, a proliferation-inducing ligand; GC, germinal center; CT, cycle control. Henceforth, this is referred to as GST. The purity was determined threshold. by SDS-PAGE and Western blot as described (16) (data not shown). Copyright © 2006 by The American Association of Immunologists, Inc. 0022-1767/06/$02.00 3036 MALARIA AND POLYCLONAL B CELL ACTIVATION B cells and cell culture tions. Real-time PCR was performed using predesigned assays (Applied Biosystems) for bcl-xL and X-linked inhibitor of apoptosis (XIAP) and a Buffy coats from blood of healthy individuals, never exposed to malaria, custom-designed assay for a proliferation-inducing ligand (APRIL). The were obtained from the blood bank of the Karolinska Hospital. Mononu- GAPDH gene was used as an endogenous control. Gene-specific PCR clear cells were isolated by centrifugation over Lymphoprep (Nycomed ϩ products were measured using an ABI PRISM 7700 (Applied Biosystems) Pharma). CD19 B cells were isolated by positive selection using the sequence detection system and analyzed with ABI PRISM 7000 SDS soft- MACS cell separation system (Miltenyi Biotec) according to the manu- ware. With the help of a standard curve, cycle threshold (CT) values were facturer’s instructions; the B cell purity varied between 94 and 99%. used to determine the corresponding mRNA quantities in each sample. Tonsils were obtained from patients undergoing routine tonsillectomy at Ն Samples with a CT 35 were excluded from the analysis. Results were the Karolinska University Hospital. Lymphocyte suspensions were pre- normalized for GADPH gene expression and therefore expressed as rela- pared by mincing the tissues and suspending the cells in complete RPMI tive mRNA expression. 1640. Isolated mononuclear cells were depleted of T cells by two rounds of rosette formation with amino ethyl isothiouronium bromide-treated SRBC DNA microarray analysis on ice. Rosettes were removed by centrifugation over Lymphoprep (17).
Recommended publications
  • An Essential Role for Maternal Control of Nodal Signaling
    RESEARCH ARTICLE elife.elifesciences.org An essential role for maternal control of Nodal signaling Pooja Kumari1,2†, Patrick C Gilligan1†, Shimin Lim1,3, Long Duc Tran4, Sylke Winkler5, Robin Philp6‡, Karuna Sampath1,2,3* 1Temasek Life Sciences Laboratory, National University of Singapore, Singapore, Singapore; 2Department of Biological Sciences, National University of Singapore, Singapore, Singapore; 3School of Biological Sciences, Nanyang Technological University, Singapore, Singapore; 4Mechanobiology Institute, National University of Singapore, Singapore, Singapore; 5Department of Cell Biology and Genetics, Max Planck Institute for Molecular Cell Biology and Genetics, Dresden, Germany; 6Bioprocessing Technology Institute, A*STAR, Singapore, Singapore Abstract Growth factor signaling is essential for pattern formation, growth, differentiation, and maintenance of stem cell pluripotency. Nodal-related signaling factors are required for axis formation and germ layer specification from sea urchins to mammals. Maternal transcripts of the zebrafish Nodal factor, Squint (Sqt), are localized to future embryonic dorsal. The mechanisms by which maternal sqt/nodal RNA is localized and regulated have been unclear. Here, we show that maternal control of Nodal signaling via the conserved Y box-binding protein 1 (Ybx1) is essential. We identified Ybx1 via a proteomic screen. Ybx1 recognizes the 3’ untranslated region (UTR) of *For correspondence: karuna@ sqt RNA and prevents premature translation and Sqt/Nodal signaling. Maternal-effect mutations in tll.org.sg zebrafish ybx1 lead to deregulated Nodal signaling, gastrulation failure, and embryonic lethality. Implanted Nodal-coated beads phenocopy ybx1 mutant defects. Thus, Ybx1 prevents ectopic † These authors contributed Nodal activity, revealing a new paradigm in the regulation of Nodal signaling, which is likely to equally to this work be conserved.
    [Show full text]
  • A Computational Approach for Defining a Signature of Β-Cell Golgi Stress in Diabetes Mellitus
    Page 1 of 781 Diabetes A Computational Approach for Defining a Signature of β-Cell Golgi Stress in Diabetes Mellitus Robert N. Bone1,6,7, Olufunmilola Oyebamiji2, Sayali Talware2, Sharmila Selvaraj2, Preethi Krishnan3,6, Farooq Syed1,6,7, Huanmei Wu2, Carmella Evans-Molina 1,3,4,5,6,7,8* Departments of 1Pediatrics, 3Medicine, 4Anatomy, Cell Biology & Physiology, 5Biochemistry & Molecular Biology, the 6Center for Diabetes & Metabolic Diseases, and the 7Herman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202; 2Department of BioHealth Informatics, Indiana University-Purdue University Indianapolis, Indianapolis, IN, 46202; 8Roudebush VA Medical Center, Indianapolis, IN 46202. *Corresponding Author(s): Carmella Evans-Molina, MD, PhD ([email protected]) Indiana University School of Medicine, 635 Barnhill Drive, MS 2031A, Indianapolis, IN 46202, Telephone: (317) 274-4145, Fax (317) 274-4107 Running Title: Golgi Stress Response in Diabetes Word Count: 4358 Number of Figures: 6 Keywords: Golgi apparatus stress, Islets, β cell, Type 1 diabetes, Type 2 diabetes 1 Diabetes Publish Ahead of Print, published online August 20, 2020 Diabetes Page 2 of 781 ABSTRACT The Golgi apparatus (GA) is an important site of insulin processing and granule maturation, but whether GA organelle dysfunction and GA stress are present in the diabetic β-cell has not been tested. We utilized an informatics-based approach to develop a transcriptional signature of β-cell GA stress using existing RNA sequencing and microarray datasets generated using human islets from donors with diabetes and islets where type 1(T1D) and type 2 diabetes (T2D) had been modeled ex vivo. To narrow our results to GA-specific genes, we applied a filter set of 1,030 genes accepted as GA associated.
    [Show full text]
  • BD Biosciences New RUO Reagents - November 2020
    BD Biosciences New RUO reagents - November 2020 Reactivity Description Format Clone Size Cat. number Hu CD133 FITC W6B3C1 100µg 567029 Hu CD133 FITC W6B3C1 25µg 567033 Hu CD39 PE A1/CD39 100Tst 567156 Hu CD39 PE A1/CD39 25Tst 567157 Hu KIR2DL1/S1/S3/S5 PE HP-MA4 100Tst 567158 Hu KIR2DL1/S1/S3/S5 PE HP-MA4 25Tst 567159 Hu IL-22 Alexa Fluor® 647 MH22B2 100µg 567160 Hu IL-22 Alexa Fluor® 647 MH22B2 25µg 567161 Hu CD99 R718 TU12 50µg 751651 Hu CD161 R718 DX12 50µg 751652 Hu CD116 R718 HGMCSFR-M1 50µg 751653 Hu HLA-G R718 87G 50µg 751670 Hu CD27 R718 O323 50µg 751686 Hu CD80 (B7-1) R718 2D10.4 50µg 751737 Hu Integrin αvβ5 R718 ALULA 50µg 751738 Hu CD266 (Tweak-R) R718 ITEM-4 50µg 751739 Hu ErbB3 (HER-3) R718 SGP1 50µg 751799 Hu TCR Vβ5.1 R718 LC4 50µg 751816 Hu CD123 (IL-3Ra) R718 6H6 50µg 751844 Hu CD1a R718 SK9 50µg 751847 Hu CD20 R718 L27 50µg 751849 Hu Disial GD2 R718 14.G2A 50µg 751851 Reactivity Description Format Clone Size Cat. number Hu CD71 R718 L01.1 50µg 751853 Hu CD278 (ICOS) R718 DX29 50µg 751854 Hu B7-H4 R718 MIH43 50µg 751857 Hu CD53 R718 HI29 50µg 751858 Hu CD197 (CCR7) R718 2-L1-A 50µg 751859 Hu CD197 (CCR7) R718 3D12 50µg 751861 Hu CD31 R718 L133.1 50µg 751863 Hu EGF Receptor R718 EMAB-134 50µg 751864 Hu CD8b R718 2ST8.5H7 50µg 751867 Hu CD31 R718 MBC 78.2 50µg 751869 Hu CD162 R718 KPL-1 50µg 751873 Hu CD24 R718 ML5 50µg 751874 Hu CD159C (NKG2C) R718 134591 50µg 751876 Hu CD169 (Siglec-1) R718 7-239 50µg 751877 Hu CD16b R718 CLB-GRAN11.5 50µg 751880 Hu IgM R718 UCH-B1 50µg 751881 Hu CD275 R718 2D3/B7-H2 50µg 751883 Hu CD307e
    [Show full text]
  • Profound Treg Perturbations Correlate with COVID-19 Severity
    bioRxiv preprint doi: https://doi.org/10.1101/2020.12.11.416180; this version posted December 15, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Profound Treg perturbations correlate with COVID-19 severity Silvia Galván-Peña1*, Juliette Leon1,2*, Kaitavjeet Chowdhary1, Daniel A. Michelson1, Brinda Vijaykumar1, Liang Yang1, Angela Magnuson1, Zachary Manickas-Hill3,4, Alicja Piechocka- Trocha3,4, Daniel P. Worrall3,4, Kathryn E. Hall3,5, Musie Ghebremichael3,4, Bruce D. Walker3,4,6, Jonathan Z. Li3,7, Xu G. Yu3,4, MGH COVID-19 Collection & Processing Team, Diane Mathis1 and Christophe Benoist1,8,+ 1Department of Immunology, Harvard Medical School, Boston, MA, USA 2 INSERM UMR 1163, University of Paris, Imagine Institute, Paris, France 3Massachusetts Consortium on Pathogen Readiness, Boston, MA, USA 4Ragon Institute of MGH, MIT and Harvard, Cambridge, MA, USA 5Department of Medicine, Massachusetts General Hospital, Boston, MA, USA 6Howard Hughes Medical Institute, Center for the AIDS Programme of Research in South Africa. 7Brigham and Women’s Hospital, Harvard Medical School, Boston, MA, USA 8Lead contact * Equal contribution +Address correspondence to: Christophe Benoist Department of Immunology Harvard Medical School 77 Avenue Louis Pasteur, Boston, MA 02115 e-mail: [email protected] Phone: (617) 432-7741 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.12.11.416180; this version posted December 15, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission.
    [Show full text]
  • Redefining the Specificity of Phosphoinositide-Binding by Human
    bioRxiv preprint doi: https://doi.org/10.1101/2020.06.20.163253; this version posted June 21, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Redefining the specificity of phosphoinositide-binding by human PH domain-containing proteins Nilmani Singh1†, Adriana Reyes-Ordoñez1†, Michael A. Compagnone1, Jesus F. Moreno Castillo1, Benjamin J. Leslie2, Taekjip Ha2,3,4,5, Jie Chen1* 1Department of Cell & Developmental Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801; 2Department of Biophysics and Biophysical Chemistry, Johns Hopkins University School of Medicine, Baltimore, MD 21205; 3Department of Biophysics, Johns Hopkins University, Baltimore, MD 21218; 4Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21205; 5Howard Hughes Medical Institute, Baltimore, MD 21205, USA †These authors contributed equally to this work. *Correspondence: [email protected]. bioRxiv preprint doi: https://doi.org/10.1101/2020.06.20.163253; this version posted June 21, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. ABSTRACT Pleckstrin homology (PH) domains are presumed to bind phosphoinositides (PIPs), but specific interaction with and regulation by PIPs for most PH domain-containing proteins are unclear. Here we employed a single-molecule pulldown assay to study interactions of lipid vesicles with full-length proteins in mammalian whole cell lysates.
    [Show full text]
  • A Flexible Microfluidic System for Single-Cell Transcriptome Profiling
    www.nature.com/scientificreports OPEN A fexible microfuidic system for single‑cell transcriptome profling elucidates phased transcriptional regulators of cell cycle Karen Davey1,7, Daniel Wong2,7, Filip Konopacki2, Eugene Kwa1, Tony Ly3, Heike Fiegler2 & Christopher R. Sibley 1,4,5,6* Single cell transcriptome profling has emerged as a breakthrough technology for the high‑resolution understanding of complex cellular systems. Here we report a fexible, cost‑efective and user‑ friendly droplet‑based microfuidics system, called the Nadia Instrument, that can allow 3′ mRNA capture of ~ 50,000 single cells or individual nuclei in a single run. The precise pressure‑based system demonstrates highly reproducible droplet size, low doublet rates and high mRNA capture efciencies that compare favorably in the feld. Moreover, when combined with the Nadia Innovate, the system can be transformed into an adaptable setup that enables use of diferent bufers and barcoded bead confgurations to facilitate diverse applications. Finally, by 3′ mRNA profling asynchronous human and mouse cells at diferent phases of the cell cycle, we demonstrate the system’s ability to readily distinguish distinct cell populations and infer underlying transcriptional regulatory networks. Notably this provided supportive evidence for multiple transcription factors that had little or no known link to the cell cycle (e.g. DRAP1, ZKSCAN1 and CEBPZ). In summary, the Nadia platform represents a promising and fexible technology for future transcriptomic studies, and other related applications, at cell resolution. Single cell transcriptome profling has recently emerged as a breakthrough technology for understanding how cellular heterogeneity contributes to complex biological systems. Indeed, cultured cells, microorganisms, biopsies, blood and other tissues can be rapidly profled for quantifcation of gene expression at cell resolution.
    [Show full text]
  • Supplementary Materials
    Supplementary Materials COMPARATIVE ANALYSIS OF THE TRANSCRIPTOME, PROTEOME AND miRNA PROFILE OF KUPFFER CELLS AND MONOCYTES Andrey Elchaninov1,3*, Anastasiya Lokhonina1,3, Maria Nikitina2, Polina Vishnyakova1,3, Andrey Makarov1, Irina Arutyunyan1, Anastasiya Poltavets1, Evgeniya Kananykhina2, Sergey Kovalchuk4, Evgeny Karpulevich5,6, Galina Bolshakova2, Gennady Sukhikh1, Timur Fatkhudinov2,3 1 Laboratory of Regenerative Medicine, National Medical Research Center for Obstetrics, Gynecology and Perinatology Named after Academician V.I. Kulakov of Ministry of Healthcare of Russian Federation, Moscow, Russia 2 Laboratory of Growth and Development, Scientific Research Institute of Human Morphology, Moscow, Russia 3 Histology Department, Medical Institute, Peoples' Friendship University of Russia, Moscow, Russia 4 Laboratory of Bioinformatic methods for Combinatorial Chemistry and Biology, Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences, Moscow, Russia 5 Information Systems Department, Ivannikov Institute for System Programming of the Russian Academy of Sciences, Moscow, Russia 6 Genome Engineering Laboratory, Moscow Institute of Physics and Technology, Dolgoprudny, Moscow Region, Russia Figure S1. Flow cytometry analysis of unsorted blood sample. Representative forward, side scattering and histogram are shown. The proportions of negative cells were determined in relation to the isotype controls. The percentages of positive cells are indicated. The blue curve corresponds to the isotype control. Figure S2. Flow cytometry analysis of unsorted liver stromal cells. Representative forward, side scattering and histogram are shown. The proportions of negative cells were determined in relation to the isotype controls. The percentages of positive cells are indicated. The blue curve corresponds to the isotype control. Figure S3. MiRNAs expression analysis in monocytes and Kupffer cells. Full-length of heatmaps are presented.
    [Show full text]
  • Aneuploidy: Using Genetic Instability to Preserve a Haploid Genome?
    Health Science Campus FINAL APPROVAL OF DISSERTATION Doctor of Philosophy in Biomedical Science (Cancer Biology) Aneuploidy: Using genetic instability to preserve a haploid genome? Submitted by: Ramona Ramdath In partial fulfillment of the requirements for the degree of Doctor of Philosophy in Biomedical Science Examination Committee Signature/Date Major Advisor: David Allison, M.D., Ph.D. Academic James Trempe, Ph.D. Advisory Committee: David Giovanucci, Ph.D. Randall Ruch, Ph.D. Ronald Mellgren, Ph.D. Senior Associate Dean College of Graduate Studies Michael S. Bisesi, Ph.D. Date of Defense: April 10, 2009 Aneuploidy: Using genetic instability to preserve a haploid genome? Ramona Ramdath University of Toledo, Health Science Campus 2009 Dedication I dedicate this dissertation to my grandfather who died of lung cancer two years ago, but who always instilled in us the value and importance of education. And to my mom and sister, both of whom have been pillars of support and stimulating conversations. To my sister, Rehanna, especially- I hope this inspires you to achieve all that you want to in life, academically and otherwise. ii Acknowledgements As we go through these academic journeys, there are so many along the way that make an impact not only on our work, but on our lives as well, and I would like to say a heartfelt thank you to all of those people: My Committee members- Dr. James Trempe, Dr. David Giovanucchi, Dr. Ronald Mellgren and Dr. Randall Ruch for their guidance, suggestions, support and confidence in me. My major advisor- Dr. David Allison, for his constructive criticism and positive reinforcement.
    [Show full text]
  • Gene List HTG Edgeseq Immuno-Oncology Assay
    Gene List HTG EdgeSeq Immuno-Oncology Assay Adhesion ADGRE5 CLEC4A CLEC7A IBSP ICAM4 ITGA5 ITGB1 L1CAM MBL2 SELE ALCAM CLEC4C DST ICAM1 ITGA1 ITGA6 ITGB2 LGALS1 MUC1 SVIL CDH1 CLEC5A EPCAM ICAM2 ITGA2 ITGAL ITGB3 LGALS3 NCAM1 THBS1 CDH5 CLEC6A FN1 ICAM3 ITGA4 ITGAM ITGB4 LGALS9 PVR THY1 Apoptosis APAF1 BCL2 BID CARD11 CASP10 CASP8 FADD NOD1 SSX1 TP53 TRAF3 BCL10 BCL2L1 BIRC5 CASP1 CASP3 DDX58 NLRP3 NOD2 TIMP1 TRAF2 TRAF6 B-Cell Function BLNK BTLA CD22 CD79A FAS FCER2 IKBKG PAX5 SLAMF1 SLAMF7 SPN BTK CD19 CD24 EBF4 FASLG IKBKB MS4A1 RAG1 SLAMF6 SPI1 Cell Cycle ABL1 ATF1 ATM BATF CCND1 CDK1 CDKN1B NCL RELA SSX1 TBX21 TP53 ABL2 ATF2 AXL BAX CCND3 CDKN1A EGR1 REL RELB TBK1 TIMP1 TTK Cell Signaling ADORA2A DUSP4 HES1 IGF2R LYN MAPK1 MUC1 NOTCH1 RIPK2 SMAD3 STAT5B AKT3 DUSP6 HES5 IKZF1 MAF MAPK11 MYC PIK3CD RNF4 SOCS1 STAT6 BCL6 ELK1 HEY1 IKZF2 MAP2K1 MAPK14 NFATC1 PIK3CG RORC SOCS3 SYK CEBPB EP300 HEY2 IKZF3 MAP2K2 MAPK3 NFATC3 POU2F2 RUNX1 SPINK5 TAL1 CIITA ETS1 HEYL JAK1 MAP2K4 MAPK8 NFATC4 PRKCD RUNX3 STAT1 TCF7 CREB1 FLT3 HMGB1 JAK2 MAP2K7 MAPKAPK2 NFKB1 PRKCE S100B STAT2 TYK2 CREB5 FOS HRAS JAK3 MAP3K1 MEF2C NFKB2 PTEN SEMA4D STAT3 CREBBP GATA3 IGF1R KIT MAP3K5 MTDH NFKBIA PYCARD SMAD2 STAT4 Chemokine CCL1 CCL16 CCL20 CCL25 CCL4 CCR2 CCR7 CX3CL1 CXCL12 CXCL3 CXCR1 CXCR6 CCL11 CCL17 CCL21 CCL26 CCL5 CCR3 CCR9 CX3CR1 CXCL13 CXCL5 CXCR2 MST1R CCL13 CCL18 CCL22 CCL27 CCL7 CCR4 CCRL2 CXCL1 CXCL14 CXCL6 CXCR3 PPBP CCL14 CCL19 CCL23 CCL28 CCL8 CCR5 CKLF CXCL10 CXCL16 CXCL8 CXCR4 XCL2 CCL15 CCL2 CCL24 CCL3 CCR1 CCR6 CMKLR1 CXCL11 CXCL2 CXCL9 CXCR5
    [Show full text]
  • The Expression and Regulation of Chemerin in the Epidermis
    RESEARCH ARTICLE The Expression and Regulation of Chemerin in the Epidermis Magdalena Banas1, Aneta Zegar1, Mateusz Kwitniewski1, Katarzyna Zabieglo1, Joanna Marczynska1, Monika Kapinska-Mrowiecka2, Melissa LaJevic3,4, Brian A. Zabel4, Joanna Cichy1* 1 Department of Immunology, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Kraków, Poland, 2 Department of Dermatology, Zeromski Hospital, Kraków, Poland, 3 Stanford University School of Medicine, Department of Pathology, Stanford, California, United States of America, 4 Palo Alto Veterans Institute for Research, VA Palo Alto Health Care System, Palo Alto, California, United States of America * [email protected] Abstract OPEN ACCESS Chemerin is a protein ligand for the G protein-coupled receptor CMKLR1 and also binds to two atypical heptahelical receptors, CCRL2 and GPR1. Chemerin is a leukocyte attractant, Citation: Banas M, Zegar A, Kwitniewski M, Zabieglo K, Marczynska J, Kapinska-Mrowiecka M, et al. adipokine, and antimicrobial protein. Although chemerin was initially identified as a highly (2015) The Expression and Regulation of Chemerin expressed gene in healthy skin keratinocytes that was downregulated during psoriasis, the in the Epidermis. PLoS ONE 10(2): e0117830. regulation of chemerin and its receptors in the skin by specific cytokines and microbial fac- doi:10.1371/journal.pone.0117830 tors remains unexplored. Here we show that chemerin, CMKLR1, CCRL2 and GPR1 are Academic Editor: Bernhard Ryffel, French National expressed in human and mouse epidermis, suggesting that this tissue may be both a Centre for Scientific Research, FRANCE source and target for chemerin mediated effects. In human skin cultures, chemerin is signifi- Received: October 1, 2014 cantly downregulated by IL-17 and IL-22, key cytokines implicated in psoriasis, whereas it is Accepted: December 31, 2014 upregulated by acute phase cytokines oncostatin M and IL-1β.
    [Show full text]
  • Supplementary Material DNA Methylation in Inflammatory Pathways Modifies the Association Between BMI and Adult-Onset Non- Atopic
    Supplementary Material DNA Methylation in Inflammatory Pathways Modifies the Association between BMI and Adult-Onset Non- Atopic Asthma Ayoung Jeong 1,2, Medea Imboden 1,2, Akram Ghantous 3, Alexei Novoloaca 3, Anne-Elie Carsin 4,5,6, Manolis Kogevinas 4,5,6, Christian Schindler 1,2, Gianfranco Lovison 7, Zdenko Herceg 3, Cyrille Cuenin 3, Roel Vermeulen 8, Deborah Jarvis 9, André F. S. Amaral 9, Florian Kronenberg 10, Paolo Vineis 11,12 and Nicole Probst-Hensch 1,2,* 1 Swiss Tropical and Public Health Institute, 4051 Basel, Switzerland; [email protected] (A.J.); [email protected] (M.I.); [email protected] (C.S.) 2 Department of Public Health, University of Basel, 4001 Basel, Switzerland 3 International Agency for Research on Cancer, 69372 Lyon, France; [email protected] (A.G.); [email protected] (A.N.); [email protected] (Z.H.); [email protected] (C.C.) 4 ISGlobal, Barcelona Institute for Global Health, 08003 Barcelona, Spain; [email protected] (A.-E.C.); [email protected] (M.K.) 5 Universitat Pompeu Fabra (UPF), 08002 Barcelona, Spain 6 CIBER Epidemiología y Salud Pública (CIBERESP), 08005 Barcelona, Spain 7 Department of Economics, Business and Statistics, University of Palermo, 90128 Palermo, Italy; [email protected] 8 Environmental Epidemiology Division, Utrecht University, Institute for Risk Assessment Sciences, 3584CM Utrecht, Netherlands; [email protected] 9 Population Health and Occupational Disease, National Heart and Lung Institute, Imperial College, SW3 6LR London, UK; [email protected] (D.J.); [email protected] (A.F.S.A.) 10 Division of Genetic Epidemiology, Medical University of Innsbruck, 6020 Innsbruck, Austria; [email protected] 11 MRC-PHE Centre for Environment and Health, School of Public Health, Imperial College London, W2 1PG London, UK; [email protected] 12 Italian Institute for Genomic Medicine (IIGM), 10126 Turin, Italy * Correspondence: [email protected]; Tel.: +41-61-284-8378 Int.
    [Show full text]
  • ARHGAP25 (A-12): Sc-137297
    SAN TA C RUZ BI OTEC HNOL OG Y, INC . ARHGAP25 (A-12): sc-137297 BACKGROUND SOURCE GTPase-activating proteins (GAPs) accelerate the intrinsic rate of GTP ARHGAP25 (A-12) is an affinity purified goat polyclonal antibody raised hydrolysis of Ras-related proteins, resulting in downregulation of their active against a peptide mapping within an internal region of ARHGAP25 of human form. ARHGAP25 (Rho GTPase activating protein 25), also known as Rho-type origin. GTPase-activating protein 25, is a 645 amino acid protein that contains one Pleckstrin homology (PH) domain and one Rho-GAP domain. Encoded by a PRODUCT gene that maps to human chromosome 2p14, ARHGAP25 exists as four alter - Each vial contains 200 µg IgG in 1.0 ml of PBS with < 0.1% sodium azide natively spliced isoforms and shares significant homology with ARHGAP22 and 0.1% gelatin. and ARHGAP24 by exhibiting a common domain structure (PH-RhoGAP-CC); however, tissue expression of ARHGAP25 is myeloid-specific. ARHGAP25 is Blocking peptide available for competition studies, sc-137297 P, (100 µg a candidate epigenetic biomarker for non-invasive prenatal diagnosis of Down peptide in 0.5 ml PBS containing < 0.1% sodium azide and 0.2% BSA). syndrome, as well as a candidate gene in a chromosome 2p susceptibility locus linked to salt-sensitive hypertension and drug response. APPLICATIONS ARHGAP25 (A-12) is recommended for detection of ARHGAP25 isoforms 1 REFERENCES and 2 of mouse, rat and human origin by Western Blotting (starting dilution 1. Katoh, M., et al. 2004. Identification and characterization of ARHGAP24 1:100, dilution range 1:50-1:500), immunofluorescence (starting dilution 1:25, and ARHGAP25 genes in silico.
    [Show full text]