Appendix12 COUNTRYREPORTOFFORFMD A. Naci Bulut, VMD 1.OUTBREAKSITUATION 1.1.FMDsituationbetween20052007inTurkey ThediseaseisendemicinRegion,Twoserotypes;O 1 ManisaandAtypehavebeen circulatinginAnatoliaRegion.OutbreaksduetotypeAsia1hasnotbeenreportedsince April2002inTurkey. In2005majorityofoutbreakswereoccurredwithtypeO1ManisauntilanewAtypewas introduced to country on November; a total of 122 FMD outbreaks have been detected, 102 due to type O and 20 due to type A (Figure.1) Type A outbreaks have not been detectedinTurkeybetweenJune2005andNovember2005.Followingthedetermination ofoneoutbreakduetotypeAintheEasternprovinceofElazıginNovemberandoccurred 13furtheroutbreaksinDecember.Accordingtoepidemiologicalstudyresults,indexcase wasdetectedinIgdırprovince,locatedonTurkeyandIranborder,onemonthearlierthan Elazıgoutbreak.LaboratoryanalysisofthesevirusesshowedthatthistypeAviruseswere geneticallyquitedistantfrombothAIran96andAIran99virustopotypes,bothofwhich havebeencirculatinginTurkeyrecently.ThesequencedatawhichwasobtainedinAnkara SapInstitutewassenttoWRLPirbrightLaboratoryandtheseviruseswerecloselymatched withvirusesisolatedinIranin2005.

18 16 14 12 10 TYPE O 8 TYPE A 6 4 2 0

MAY JULY JUNE APRIL MARCH AUGUST JANUARY

OCTOBER FEBRUARY NOVEMBER DECEMBER SEPTEMBER Fig.1.Distributionofthe2005outbreaksinTurkey The viruses which were isolated from Iran were antigenically matched with A 22 Iraq vaccine strain. The antigenic relationship of these viruses with A Iran 96 and A Iran 99 vaccinestrainswereveryweak.ThesefindingsofPirbrightLaboratorywereconfirmedin SapInstituteaswellandA22Mahmatlıvaccinestrainwasdeterminedasthebestvaccine strainagainstthesenewviruses. After the introducing of type A05 Iran strain to Turkey, the disease was spread all the regionsandshoweditseffectsenormouslyonlivestock.Sincevaccineunavailabilityand animal movements occurred during the Kurban Festival, numbers of outbreaks were reached on pick on February 2006. Fortunately, new vaccine was delivered and implementedstartingonFebruarywhichwasresultedthediseasewastakenslightlyunder control.Howevergivenseasonaleffects,meltingsnowandanimalmovementstograzing area,thesecondbigpickwasobservedduringthespringtime.Sincetheoutbreakswere takenundercontrolbyeffectivecontrolmeasuresincludingincreasedfieldimmunitylevel, numbersofoutbreaksweredecreasedstartingtosummerandfinallyendoftheyearafew outbreakwasrecordedwithtypeA05Iran.

85 However, a new type O strain, O panAsia, was introduced to Turkey on October while numberoftypeAoutbreakswereseendeclining(moredetailedinformationbelowon1.2. subtitle) The disease has not been seen in Thrace Region between on June 2001February 2006. Beginning of February, the disease occurred in this region. The isolated viruses from Thrace region were also sequenced and found to be same as new viruses isolated from Anatolia recently. Consequently, total of 16 type A05 Iran outbreaks were occurred in Thrace region in 2006. Last FMD outbreak in 2006 was occurred in Silivri district of province,ThraceRegionon03.07.2006. In2006,atotalof827FMDoutbreakshavebeenreported,48duetotypeO;769dueto typeA(fig.2).

DISRIBUTION OF 2006 OUTBREAKS

200 161 150 140 TYPE A (769) 100 110 TYPE O (48) 71 79 50 50 54 27 33 NUMBER OF OUTBREAK NUMBER 20 14 24 0 7 5 3 1 2 1 2 3 10 July April May June March August January October February November December September MONTHS

Figure.2.DistributionofFMDoutbreaksin2006

1.2.CURRENTFMDOUTBREAKSITUATION TurkeyhasbeenunderthehighriskwithcirculatingaseverevirulentnewOsubtype,O PanAsia strain because of occurrence uncontrolled animal movements from outside and withinthecountry.Epidemiologicalinvestigationandmolecularepidemiologicstudieswere indicated that O PanAsia substrain has been introduced to Turkey up to October 2006, besideexisteddomesticstrainsOManisa/O Alfa05topotype,which werecausedafew outbreaksbeforetheOctober2006.Ithasbeenrecentlyrecordedoutbreaksmostlywith typeO,atotalof366outbreaksweredetected,203ofbytypeO,23ofbytypeand140of untypedrespectivelyin2007(uptoMacrh)(Table.1andfig.3). OUTBREAKS Month Type O A UNTYPED TOTAL SUSCEPTIBLE CASES DEATH October06 2 20 November06 3 14 December06 24 10 January07 122 17 37 176 156989 4563 1383 February07 63 6 44 113 80945 2036 453 March07 18 0 59 77 66056 2169 752 Total 232 67 140 439 303990 8768 2502 Table1.DistributionofrecentFMDoutbreaks

86 CURRENT FMD OUTBREAK SITUATION (OCTOBER 2006-MARCH 2007

140

120 122 100 80 60 63 59 44 40 37

OUTBREAKS NUMBER OF 24 20 20 14 17 18 10 6 0 2 3 0 March January October February November December MONTH O A UNTYPED Fig.3.Recentoutbreakssituation Although it was recorded 48 outbreaks with type O in 2006 and those isolates were droppedinOAlfa05lineagegenetically,thenumbersoftypeOoutbreakswereincreased at beginning of October 2006. Because of the effects of animals movements during the KurbanFestival(endoftheyear),viruseswerespreadalloverthecountryandnumbersof outbreakswerereachedonpickonJanuary2007.Accordingtogeneticanalysisofisolates, anewtypeOpanAsiasubstrainwasdetectedfirsttimeatSelviogluvillageinUakon8 th October2006.ThesequencedatawhichwasobtainedinAnkaraSapInstituteshowedthat this virus was closely matched with viruses isolated in Iran in 2006. It is uncertain that whetherthiswasindexcaseornotforthenewsubstrainSinceUakprovinceislocated westofTurkey,inAegeanRegion,itwasprobablethatitmightbeoccurredanothercase inEastRegionofAnatolia,closetoIranborder..Itisprobablethatthediseasewithtype O Panasia sub strain was occurred in another place where is near to border after the entrance into the country. However it is clear that this was available first evidence indicated genetic changing of circulating viruses. Many further sequence data which was madeinAnkaraSap InstituteonbetweenOctober2006andMarch2007alsosupported that O panAsia strain was circulated all over the country. Those studies were indicated thattheisolateswerenotonlyclosedtoIranisolatesbutalsotheywereclosedtoisolates ofMiddleEastRegion,particularlyofJordan.TherecentdatamadeonMarchshowedthat isolatescollectedfromırnakProvinceinSouthEastRegionofTurkey,neartoIraq/Syria borderwereclosedtotheselineages.(Table.2andDendogramsasannex). PROT.NO PROVINCE YEAR MONTH TYPE GENOTYPE TOPOTYPE 6 2007 January A A05 ASIA 5 Erzincan 2007 January O PANASIA MESA 13 Muğla 2007 January O PANASIA MESA 15 Tokat 2007 January A A05 ASIA 83 Konya 2007 January O PANASIA MESA 120 Konya 2007 January O PANASIA MESA 207 Kastamonu 2007 January A A05 ASIA 285 ırnak 2007 February O PANASIA MESA 324 Bolu 2007 February A A05 ASIA 357 Kırklareli 2007 February O PANASIA MESA 370 Isparta 2007 February A A05 ASIA Table.2.Resultsofnucleotidesequenceanalysis

87 Inadditiontothosesituations,someothersequenceresultsindicatedthatOAlfa05sub strain has been also still circulated in Anatolia which was similar to isolates caused outbreaksin2005. AlthoughitwasdetectedgeneticallydifferencesofOvirusasPanasiaandaffectedsevere clinically on animals, recent available antigenic studies, R Value ELISA, show that there hasbeennochangingantigenically,whichO1Manisavaccinestrainhasbeencoveredboth sub strains. The data for type A 05 Iran outbreaks which detected as limited number in 2007showthatithasbeenclosedtotheirgeneticlineagesandgivenhighprotectionwell antigenically(table2andDendogram.2.) Asaconclusion,ithasbeenalreadytypeOPanAsiasubstrainwasintroducedtoTurkey from two different origins and caused many outbreaks all over the country which is genetically quite distant from old isolates and no differences antigenically, which is protectedwithOManisavaccinestrain. 1.3.2007OutbreaksinThrace In2007,threeoutbreakshasbeendetectedinTraceRegion,becauseofuncontrolled animalmovementsaftertheKurbanFestival.Thedetailforthoseareasfollow:

a.Oğulpaa,HavsaEdirne Outbreak was occurred with type A05 Iran in two premises in 3 rd January. Disease was caused by returning unsold cattle from Istanbul Bayrampaa impermanent market. As a total11animalswereaffectedbydiseasein two holdingsandtheywereslaughteredafter laboratoryconfirmation.Diseasewaslimitedwithintheholdings,nospreadtoaround,by takenefficientmeasuresincludingringvaccinationwithinandaroundthevillages b.Armağan,Kırklareli Diseasewasnoticedbyownerin22thFebruaryinonedairycattle,butitwasreportedto stateveterinarycentrewithdelayingfourday.Inaresultofclinicaldiagnosis,9animals weredetectedasFMD.ThisresultwasalsoconfirmedbyLaboratoryastypeOAfterthe confirmation, all animals were slaughtered. Although it was carried out outbreak investigation, the origin of transmission was unclear. It was carried out epidemiological investigation and taken efficient measures including ring vaccination. The NSP survey in villagewasindicatedthattherewasnospreadthediseasearoundthediseasedfarm. c.Evree,Gelibolu,Çanakkale DiseasewasoccurredinsamefarmwhereoutbreakdetectedpreviouslyonJune2006and alsothecausewassimilarwithit.Officiallyunregistered(inthatplace)farmertransferred animals from Sakarya province in Anatolia to his farm in Evree. Unless movement certificatetoEvree,(foranotherplaceinAnatolia),hetransferredtheanimalshislandin Evree.Sincetheanimalswerecontactedwiththevirusbefore(accordingtoinvestigation

88 evidence), they were catch the disease by arriving Evree village on 30 th March. At the beginningtheoutbreak,8animalswereaffectedinthisfarm,butlateronviruswasspread to another two neighboring farms; as a total 15 animals were affected at three farms. Accordingtoepidemiologicalassessment(Sincelocationofthose3farmswasapartfrom mainvillagearea),inadditionthoseaffectedcattle,61animals(35cattleand26buffalo; intotal76)wereslaughteredandringvaccinationwasimplementedinthevillage 1.4.EvaluationoftheFMDOutbreaksinTurkey Whenitisovervieweddiseaseeventsoflastsevenyears,itisclearthatTurkeyhasbeen experienced with FMD outbreaks different epidemiological features year to year in him diseasehistory.Inayearithasbeenoccurrenceanupsurgeofoutbreakscausedbyone newtype,whichwasinvadedalloverthecountryandthoseweretakentheundercontrol by efficient measures; in the next year it has been welcomed again a new upsurge of outbreakscausedanotherFMDtype,suchasAsia1outbreaksinbetween1999and2001, A05Iranin2005/2006andnowcurrenttypeOPanasia. ItisclearlyappearedthatFMDoutbreakswereveryfrequentinvillagesandprobablyin fatteningherds,inpopulationwhichcancontactwithmovementanimalsandgiventheage of young primo vaccinated or unvaccinated animals , but occurred only occasionally in specialisedcattledairyherds.Thisobservationsuggeststhattheformerherdsconstitutea reservoirofFMDVandthattheymightbeasourceof outbreaks for dairy herds, which have better biosecurity measures. However, it is difficult to explain this pattern of outbreaks by taking in account that all types of epidemiological units are intensely and equallyvaccinatedagainstFMD,inabsenceofserosurveillancedatatoestimatetheherd immunitylevel.ThedataofvaccinationcoverageforAutumn2006clearlyshowthatsome area,inwhichparticularlyhashighriskforFMD,likeEastandSoutheastRegion,hasvery poorcoveragewhichisalsoallowthemaintainsofcirculatinglivevirus.Andalsoitwas observedthatvariabilityofvaccinationcoverageinunit(village)canberesultedsamerisk. Someownersrefusetohavetheircattlevaccinated,becausetheyarescared/supposethat the vaccination might induce abortion, decrease of milk production, and for others the vaccinatorsbringFMDontheirfarmandalsoforothershavenohighlyawarenessofthe disease etc. In addition, animals that are not 3 months of age at the moment of the vaccinephasemightremainunvaccinateduntilthefollowingphaseandthusuntiltheage ofaround7months.Intheseconditions,theexistenceofnonornotproperlyvaccinated animals reveals the presence of FMDV in the environment brought by other animals, humans,vehicles,etc. Inallthiscircumstances,animalmovementsshouldbetakenstronglyconsiderationonrisk tohelpbythespreadtheexistedcirculatingvirus. Duringtheoutbreaks,althoughitwasconductedcontrolmeasurestostopthespreadof thediseaseandachieveditpartlyresultedbydecreasingnumberofoutbreaks,itshould beconsideredthatitcannotbefullyeradicatedthediseaseinthecountryandaroundthe country.Thisconsiderationhasbeenraisedthequestionsonourepidemiologicalsituation andtoolsthatithasbeenusedforcombatingthedisease.Inthisrespect,itisclearthat the strategy already used for combating the disease should be revised and defined an effective policy. To achieve this objective, some points which can be considered are as follow: Conduct a well structured network within countryand particularly as regional to maintainssharinginformation,informingemergingeventsect Recent diseaseexperiences clearly learnt that risk on entrance of diseasefrom outside the country is very high. For this reason, Can be constituted coordination with neighboringcountrybyleadershipanInternationalOrganization(ex:EUFMD/OIE)tostop: ºAnimalsmovement ºthespreadofthediseasebytheothersway Recentexperienceshavebeenlearntthatanimalmovementisthemainelement thespreadofthedisease.Forthisreason,itshouldberevisedcurrentpolicyonitandfind awellstructuredmeasureforit.Forinstance: ºdialer should be taken under the registration system and it should be trained them.Forthisitneedsanewlegislation ºItshoulbefindpracticalsolutionformovementsduringtheKurbanFestivaland relatingtothisreturningunsoldanimalsanddesignofKurbanmarket

89 Encourageownerforearlynotificationofdisease Improvement epidemiological investigation to detect the disease earlier and to stop further the spread of the disease. For this purpose, it can be constitute a epidemiological team only responsible for disease investigation; for example at FMD Institute Remindandtotrainanimalownersandtheirstaffsinbiosecuritycontrolmeasures concerning: importance of the disease, movements: animals, vehicles, humans and Disinfection This recent situation demonstrates once again that the vaccination is only not sufficienttooltocontrolFMDandneedstobeassociatedwithstrongsanitarymeasures. It should be established a regional vaccine/sub strain bank to be preparedness forentranceanewstrain General Measures taken in the out break areas: InordertoprevententranceofnewvirustypesintoTurkey,asurveillanceprogramhas beenintroducedintheEastandtheSouthEasternborderregions. Also the restriction of animal and animal products movements, quarantine, intensive vaccination programs and active monitoring and surveillance programs have been introduced. In case of outbreaks, ring vaccination program is applied in the focus. Due to the insufficiencyinthevaccineproductionandunwillingnessofthefarmers,vaccinationofthe sheepcannotbecarriedoutunderanationwideprogram. Diagnosis, research and vaccine production services are carried out by Foot and Mouth DiseaseInstitute,locatedinAnkara. 2. Vaccinationprogrammein2006 MassvaccinationpolicywasthemainelementofthecontrolprogrammeagainstFMD. VaccinationProgrammewhichhasbeenimplementedin2006isasfollows; • Vaccinationpolicy o SpringvaccinationcampaignusingtrivalentvaccineinMarchandApril o Autumn vaccination campaign using trivalent and bivalent vaccine in SeptemberandOctober o Thrace and Marmara Region; Vaccinationofallruminants o In the other regions in Turkey; Vaccinationofalllargeruminants • Vaccination o Large Ruminant: • Application of routine mass vaccination twice a year all large ruminantsinthecountry, • Application of strategic vaccination to large ruminants in the selected regionattheBlackSeaRegion o Small Ruminant: • Application of routine mass vaccination once a year all ruminants in theThraceandMarmararegions . Trivalent (2 501 500 doses) and bivalent FMD vaccine (1 660 000 doses) donated by EUFMD/EC is being used in Thrace Region and selected region in Anatolia and also FMD InstitutevaccinesbeingusedinAnatolia.

90 DistributionoftrivalentandbivalentFMDvaccinedonatedbyEUFMD/ECin2006 TrivalentVaccine Spring Autumn Povince Vaccinedose Vaccinedose Total EDIRNE 225.000 135.000 360.000 TEKIRDAG 114.000 104.000 218.000 KIRKLARELI 104.500 90.000 194.500 ISTANBUL 75.000 60.000 135.000 CANAKKALE 237.000 99.000 336.000 BALIKESIR 462.000 240.000 702.000 BURSA 89.000 108.000 197.000 BILECIK 40.000 27.000 67.000 YALOVA 10.000 9.000 19.000 KOCAELI 55.000 45.000 100.000 SAKARYA 80.000 63.000 143.000 DÜZCE 0 30.000 33.000 Total 1.491.500 1.010.000 2.501.500 BivalentVaccineforAutumn Province Vaccinedose ANKARA 99.000 KONYA 198.000 KARAMAN 15.000 KIRIKKALE 15.000 YOZGAT 99.000 KIRSEHIR 30.000 AKSARAY 30.000 NEVSEHIR 25.000 KAYSERI 99.000 SIVAS 171.000 CORUM 81.000 AMASYA 81.000 TOKAT 171.000 ESKISEHIR 81.000 DENIZLI 72.000 BURDUR 72.000 USAK 60.000 AFYON 171.000 KUTAHYA 90.000 Total 1.660.000

91 NewtrivalentFMDvaccinedonatedbyEUFMD/EConNovember2006  As a total 1000.000 doses trivalent FMD vaccine have been delivered to Sap InstituteonNovember2006  Those vaccines were used for emergency vaccination during the Kurban Festival and2007SpringVaccinationCampaignforThrace.

2.1. Spring vaccination campaign in 2006 Spring vaccination campaign was carried out between March and April 2006. Trivalent vaccinedonatedbyEUFMD/ECwasusedinThraceRegion.Trivalentvaccineproducedby FMDInstitutewasusedinAnatoliaRegion. Intheframeworkofthevaccinationcampaign92%oflargeruminantsand82%ofsmall ruminantsinThraceRegionand72%ofprogrammedlargeruminantsand98%ofsmall ruminantsinAnatoliaRegionwerevaccinatedrespectively.Springvaccinationfiguresare giveninTable3and4asfollows: Table.3.VaccinationfiguresforSpring2006campaigninTurkey LargeRuminants SmallRuminants Region Programme Vaccinated. % Programme Vaccinated. % Anatolia 9.611.857 6.943.394 72 1.757.934 1.721.279 98 Thrace 527.153 484.630 92 900.180 737.123 82 Total 10.139.010 7.428.024 73 2.658.114 2.458.402 92 Table.4.VaccinationfiguresforSpring2006campaigninThrace Province Vaccinationprogramme Vaccination ofanimals Largerum. Smallrum. Largerum. % Smallrum. % CANAKKALE 115257 29979 90383 78 214461 64 EDIRNE 142236 14071 134357 94 178093 76 ISTANBUL 61460 4151 62826 102 53257 96 KIRKLARELI 86004 20262 87184 101 167288 120 TEKIRDAG 122196 5922 109880 90 124024 94 Total 527153 74385 484630 92 737123 82 2.2 Autumn vaccination campaign in 2006 Autumn vaccination campaign was carried out between September and October 2006. Trivalent and bivalent vaccines donated by EUFMD/EC were used in Thrace Region and selectedAnatoliaregion.TrivalentvaccineproducedbyFMDInstitutewasusedinAnatolia Region.

Although88%oflargeruminantswerevaccinatedinThraceRegion,72%ofprogrammed largeruminantswerevaccinatednationwide.AutumnvaccinationfiguresaregiveninTable 5and6asfollows;fig.1andtable1: Table5.VaccinationfiguresforAutumn2006campaigninTurkey Programme Vaccinated. % Anatolia 9.140.818 6.526.858 71 Thrace 527.097 462.685 88 Total 9.667.915 7.009.030 72

92 Table6.VaccinationfiguresforAutumn2006campaigninThrace Province Vaccinationprogramme ofanimals Largerum. Smallrum. Largerum. % CANAKKALE 115.261 81.700 71 EDIRNE 142.236 128.238 90 ISTANBUL 61.460 59.934 98 KIRKLARELI 86.004 78.407 91 TEKIRDAG 122.136 114.406 94 Total 527.097 462.685 88

93 3.VACCINEPRODUCTIONANDAVAILABILITYATAPINSTITUTEFORSPRING VACCINATIONCAMPAIGN During the six months period for renovation some part of vaccine department, Antigen Concentration, Inactivation, Vaccine Formulation and Vaccine Bottling Units at ap InstitutewerereconstructedaccordingtoGMPrulesandhasbeenreadyforproductionand finallyvaccineproductionwasstartedonJanuary2007. 5 million doses trivalent vaccines have been already produced and delivered to use and some amount of antigen, which is equal to 4 million trivalent vaccines, is waited to be bottling which means that preparation of vaccine to be need for spring vaccination campaignhasbeenalreadyachievedsuccessfully.Accordingtothevaccinationprogram, vaccineproductionwillbecontinuedtobeusedforthenextcampaign. VaccinestrainsproducedatapInstituteareasfollow: O1Manisa MatcheswithnewvariantsofPanAsiatypeO A22Iraq24/67 MatcheswithaIran05 Asia1Shammir SpringvaccinationcampaignhasbeenstartedonbeginningofMarchandwillbecompleted inendofApril.Sincethecampaignhasnotbeenfinalised,dataforcoverageofvaccination willbepresentedafterthecampaign.

94 Annex.1.FMDVTypeAphylogramforregionalstrainscirculatingin1998to present A10Holl/NET/1942 A/EGY/1/2006 A/EGY/2/2006 A15/T/1960|AY593755.1|VP1 A/Ind/170/88 A/India/253/98 A/Ind/236/99 A/India/302/88 A/Ind/160/90 A/India/61/88 A/IRN/22/99 A/Igdir/TUR/382/06/99 A/Kayseri/TUR/1263/11/00 A/Erzurum/TUR/222/06/03 A/Elazig/TUR/453/11/03 A/Afyon/TUR/214/06/03 A/Sakarya/TUR/75/03/04 A99/Konya/TUR/311/05 A/Kirsehir/TUR/124/05/04 A99/Konya/TUR/160/04 A/Afyon/TUR/245/06/03 A/TUR/5/2003 A99/Kayseri/TUR/238/04 A/Afyon/TUR/246/06/03 A/Afyon/TUR/244/06/03 A99/Kayseri/TUR/237/04 A/IRN/2/87 A/India/395/88 A22/Ind/17/77 A22/Iraq/1964 A22/Mahmatli/1965 A22/USSR/65 A22-550 A/IND/256/98 A/GUA/24/91 A/TUR/2/2003 A/TUR/Hmn A/TUR/4/2003 A/IRN/17/2005 A/IRQ/108/2002 A/IRN/5/2003 A/IRN/33/2004 A/Burdur/TUR/205/06/04 A/IRN/98 A/Aydin/TUR/148/03/98 A/Burdur/185/03/98 A/Burdur/TUR/186/03/98 A/Balikesir/TUR/28/01/98 A/Aydin/TUR/51/01/98 A/Ankara/TUR/89/02/98 A/Kutahya/TUR/45/01/98 A/IRN/32/2001 A/IRN/34/2001 A/IRN/2/2002 A/IRN/6/2002 A/IRN/7/2003 A/IRN/7/2004 A/IRN/41/2003 A/IRN/26/2003 A/PAK/5/2006 A/IRN/53/2005 A/Aydin/1451/2006 A/IRN/22/2005 A/IRN/5/2006 A/PAK/1/2006 A/PAK/3/2006 A/Hakkari/1240/2006 A/Bolu/324/2007 A/Van/1269/2006 A/Hakkari/1266/2006 A/Van/1416/2006 A/Diyarbakir/553/2005 A/IRN/4/2005 A/IRN/1/2005 A/Denizli/1068/2006 A/IRN/29/2005 A/IRN/10/2005 A/IRN/16/2005 A/IRN/13/2005 A/Eskisehir/1115/2006 A/Samsun/738/2006 A/Bursa/1250/2006 A/Aydin/1400/2006 A/Kastamonu/208/2007 A/Amasya/1433/2006 A/Afyon/1374/06 A/Usak/1401/2006 A/Ardahan/347/2006 A/Erzurum/203/2006 A/Balikesir/330/2006 A/Nevsehir/331/2006 A/Canakkale/1012/2006 A/Kars/957/2006 A/Igdir/979/2006 A/Konya/700/2006 A/Edirne/6/2007 A/Tokat/48/2007 A/Adana/1048/2006 A/Tunceli/1091/2006 A/Ankara/29/2006 A/Ankara/969/2006 A/Kayseri/1024/2006 A/Ankara/546/2005 A/Diyarbakir/1088/2006 A/Bingöl/571/2006 A/Bingol/1096/2006 A/Elazig/542/2005 A/Elazig/548/2005 A/Kastamonu/337/2006 A/Igdir/1050/2006 A/Bolu/658/2006 A/Konya/1372/2006 A/Isparta/370/2007 A/Afyon/583/2006 A/Konya/562/2005 A/Tekirdag/194/2006 A/Bolu/552/2005 A/Bolu/565/2005 A/Kirklareli/175/2006 A/Tekirdag/270/2006 A/Kirklareli/161/2006 A/Mersin/560/2005 A/Gaziantep/569/2005 A/Samsun/739/2006 A/Samsun/1025/2006 A/Kastamonu/1104/2006 A/IRN/7/2006 A/Konya/1029/2006 A/Bilecik/564/2005 A/Kutahya/570/2005 A/Diyarbakir/664/2006 A/Kars/726/2006 A/Erzincan/1084/2006 A/Kars/764/2006 A/Mus/1443/2006 0.1

95 Annex.2. FMDV Type O phylogram for regional strains circulating in 1998 to present

O1/FRG/Kaufbeuren6 O/XJ O/HKN/1/2006 6 O/HKN/6/200 O/HKN/10/200 4 O/PAK/17/200 4 O/PAK/16/2003 O1/Manisa/Turkey/63 9 O/Igdir/472/199 O/IRN/15/9 O/TUR/1/9 8 O/Sivas/61/200 6 O/TUR/5/200 1 O/TUR/2/200 O/GRE/27/92 O/PAK/1/2000 O/PAK/53/2006 3 O/IRN/15/200 3 O/PAK/15/200 O/IRN/61/2004 2 O/IRN/4/200 ran 2001 1 O/IRN/20/200 Đ 3 O/IRN/6/200 O/IRN/8/200 O/IRN/15/200 3 O/Mersin/35/200 O/Mersin/13/2003 O/Ankara/250/200 4 O/KMaras//100/2004 1 O/Erzincan/211/200 O/TUR/7/2003 O/LEB/1/2003 3 O/ISR/7/200 3 O/ISR/2/200 4 O/ISR/8/200 O/ISR/11/200 O/IRN/6/200 O/Denizli/87/200 O/Denizili/73/200 4 O/Denizli/152/2003 3O/Eskisehir/384/200 3 O/Denizli/441/200 3 O/Nigde/353/200 3 O/KMaras/1127/200 3O/Burdur/109/0 6 O/Burdur/110/200 6 O/Aydin/125/0 6 O/Mersin/385/200 O/Afyon/260/2006 O/ISR/1/200 O/alfa/ O/ISR/2/200 6 O/ISR/1/200 6 O/Snir/0 O/Ardahan/353/2005 O/Konya/395/2005 O/Sakarya/194/2005 5 O/Adiyaman/224/200 5 O/Kayseri/386/200 O/Ardahan/474/2005 O/Erzurum/213/2005 O/Erzurum/423/200 O/Mus/465/200 O/Erzurum/248/2005 O/Igdir/513/2005 O/Rize/412/2005 O/Ardahan/340/2005 O/Konya/426/2005 O/Bayburt/226/2005 O/Sivas/510/2005 5 O/Osmaniye/193/200 5 O/Elazig/282/200 5 O/Kayseri/163/200 O/Rize/435/2005 O/Nigde/460/200 O/Kars/522/200 O/Kars/250/200 O/Kars/249/2005 O/Ardahan/326/2005 O/Elazig/338/2005 5 O/Nevsehir/242/200 5 O/Nevsehir/478/200 5 O/Nevsehir/398/200 O/Nevsehir/502/2005 5 O/Kayseri/506/200 5 O/Nigde/479/200 5O/Nigde/507/200 5 O/Kirsehir/485/200 5O/Konya/438/0 O/MAY/6/200 O/NEP/4/200 3 O/BHU/41/200 3 O/NEP/5/200 O/BHU/47/2003 M 2003 O/NEP/6/2003 alesia O/BHU/15/2003 O/BHU/33/200 O/BHU/40/200 O/BHU/30/2004 4 O/BHU/28/200 PanAsia 4 O/BHU/26/200 O/PAK/14/2004 O/PAK/4/2004 6 O/Karabuk/1472/200 6 O/Erzincan/5/200 6 O/Diyarbakir/1481/200 II O/Mugla/13/2007 6 O/IRN/10/2007 O/Sirnak/285/2007 O/IRN/8/200 O/IRN/9/200 6 O/Usak/1423/200 O/Kirklareli/357/20076 O/Konya/83/2007 I O/PAK/22/200O/Konya/120/2007 O/IRN/67/200 O/PAK/19/2005 1 O/PAK/3/200 5 O/PAK/25/200 O/IRN/2/2005 5O/IRN/16/200 3 O/IRN/58/200 O/IRN/41/200 3 O/IRN/8/200 1 O/BAR/6/9 O/IRQ/30/200 4 O/IRN/1/2009 0 O/TUR/8/200 0 O/TUR/5/200 O/MOG/2000 2001 0O/IRN/16/200 UK 0 O/PAK/45/200 O/AFG/16/2001 3 O/IRN/24/9 O/IRN/9/93 O/Konya/512/199 O/1734/RUS/200 O/Tibet/CHA/99 O/JPN/2000 9 O/SAR/200 O/UKG/35/2000 0O/IRL/134/200 O/Ankara/643/1991 1 O/TUR/1/200 9 O/Kirsehir/586/200 O/TUR/2/2003 1 O/Diyarbakir/363/200 1 O/Bursa/173/200 O/Duzce/207/200 O/Bingol/330/200 O/Bingol/332/200 5 O/Diyarbakir/319/200 O/KMaras/366/200 5 O/Amasya/100/2005 3 O/Afyon/171/200 4 O/Kutahya/134/200 O/beta/05 O/Afyon/107/2004 O/SYR/3/2004 O/Ankara/377/2004 O/TUR/12/2002 2O/Erzincan/351/200 2 O/TUR/3/200 2 O/TUR/3/200 O/Ankara/406/2003 2 O/Sivas/43/200 0. 2 1

96