D05.2 Statement on the completion of the publication list
Deeping collaboration on novel biomolecular electronics based on “smart” nanomaterials WIDESPREAD-05- Grant agreement ID: 951887 Call reference: 2020-Twinning Start date: 1st October 2020 Duration: 36 months
Deliverable identification Leading beneficiary: IMBG Related WP: WP5 Planned delivery date: M02 Related period: - Actual delivery date: M02 Dissemination level: PU Delivery status: Submitted
Contributors: Beneficiaries Name(s) Institute of Molecular Biology and Genetics of Sergei Dzyadevych – Yanina Mishchuk NASU Zentrum Fur Soziale Innovation Gmbh Gorazd Weiss
Reviews Version Reviewer Date V0.1 IMBG 22/11/2020
V0.2 ZSI 23/11/2020
IMBG publications in scientific journals reffered in Scopus, Web of Science Core Collection in 2017‐2020
2017………………………………………………………………………………………………………………………2 2018……………………………………………………………………………………………………………………..15 2019……………………………………………………………………………………………………………………..26 2020……………………………………………………………………………………………………………………..38
2017
1. Molecular modeling and molecular Journal of Molecular Graphics A.V. Rayevsky, M. Sharifi, dynamics simulation study of and Modelling ‐ 2017, V. 76. P. M.A. Tukalo archaeal leucyl‐tRNA synthetase in 289‐295. complex with different mischarged http://dx.doi.org/doi:10.1016/j.j tRNA in editing conformation mgm.2017.06.022
2. d(A)3d(T)3 and d(G)3d(C)3 B‐DNA Journal of Molecular Modeling 23 L Gorb, TA Zubatiuk, R mini‐helixes: the DFT/M06‐2x and (10), 289 (2017) Zubatyuk, D Hovorun, J DFT/B97‐D3 comparison of DOI: 10.1007/s00894‐017‐3449‐y Leszczynski geometrical and energetic characteristics 3. Enthalpy‐entropy compensation: Eur Biophys J. 2017 May; Dragan AI, Read CM, Crane‐ the role of solvation 46(4):301‐308. doi: Robinson C. 10.1007/s00249‐016‐1182‐6. https://www.researchgate.net/p ublication/309590885_Enthalpy‐ entropy_compensation_the_role _of_solvation
4. Izatizon, as an izatin‐ International Journal of Bolsunova Ol’ha I., Zaika thiosemicarbazone derivative, has Pharmaceutical Science Invention Leonid A., Potopalsky Anatoliy antiviral, anti‐tumor actions and no ‐2017 ‐V.6. ‐Is.5. – P.7‐9, Impact I., Voznyuk Anna V. side effects factor 1,695, Індія. http://www.ijpsi.org/Papers/Vol6 (5)/B06050709.pdf
5. A QM/QTAIM detailed look at the Journal of Biomolecular Structure Brovarets’ O.O., Voiteshenko, Watson‐Crick↔wobble tautomeric & Dynamics. – 2017. – DOI: I.S, Pérez‐Sánchez H.E., & transformations of the 2‐ 10.1080/07391102.2017.1331864 Hovorun D.M. aminopurine∙pyrimidine mispairs 6. A new mechanism of post‐transfer Journal of Biomolecular Structure Boyarshin K.S., Priss A.E., editing by aminoacyl‐tRNA and Dynamics. – 2017. – V. 35, N Rayevskiy A.V., Ilchenko M.M., synthetases: Catalysis of hydrolytic 3. – P. 669‐682. Dubey I.Ya., Kriklivyi I.A., reaction by bacterial‐type prolyl‐ https://doi.org/10.1080/0739110 Yaremchuk A.D., Tukalo M.A. tRNA synthetase 2.2016.1155171
7. Computational Modeling and Journal Biomol Struct Dyn. 2017 , Kravchuk VO, Savytskyi Molecular Dynamics Simulations of Vol.35, N13, 2772‐2788 . Impact OV, Odynets KO, Mykuliak Mammalian Cytoplasmic Tyrosyl‐ factor 3,123. VV, Kornelyuk AI. tRNA Synthetase and Its Complexes PMID: 27615678 with Substrates. DOI: 10.1080/07391102.2016.12 35512
8. A QM/QTAIM research under the New Journal of Chemistry 41 (15), OO Brovarets’, magnifying glass of the DPT 7232‐7243 (2017) IS Voiteshenko, H Pérez‐ tautomerisation of the wobble DOI:10.1039/c7nj00717e Sánchez, DM Hovorun mispairs involving 2‐aminopurine
9. Physico‐chemical profiles of the Physical Chemistry & Chemical OO Brovarets’, IS Voiteshenko, wobble↔ Watson‐Crick G*∙ 2AP Physics: 20 (1), 623‐636 (2017) DM Hovorun (w)↔ G∙ 2AP (WC) and A∙ 2AP DOI: 10.1039/c7cp05139e (w)↔ A*∙ 2AP (WC) tautomerisations: a QM/QTAIM comprehensive survey. 10 H.H. Repich, V.V. Orysyk, L.G. Synthesis, spectral characterization J. of Inorganic Biochemistry. 168, Palchykovska, S.I. Orysyk, Yu.L. of novel Pd(II), Pt(II) ‐ 98–106 (2017). Zborovskii, O.V. Vasylchenko, coordination compounds based on DOI:10.1016/j.jinorgbio.2016.12. O.V. Storozhuk, A.A. Biluk, V.V. N‐allylthioureas. Cytotoxic 004 Nikulina, L.V. Garmanchuk, V.I. properties and DNA binding ability Pekhnyo, M.V. Vovk 11 Complexes of Oligoribonucleotides Pharmaceuticals. – 2017. – V. 10, Melnichuk N. Semernikova L. with D‐Mannitol Inhibit №3. – P. 71. Tkachuk Z. Hemagglutinin–Glycan Interaction DOI: 10.3390/ph10030071 and Suppress Influenza A Virus H1N1 (A/FM/1/47) Infectivity In Vitro. 12 Structural hypervariability of the Pharmaceuticals (Basel). – 2017. K. Niefind, two human protein kinase CK2 – Vol. 10, № 1. – pii: E9. N. Bischoff, catalytic subunit paralogs revealed https://doi.org/10.3390/ph10010 A.G. Golub, by complex structures with a 009 V.G. Bdzhola, flavonoland a thieno[2,3‐ A.O. Balanda, d]pyrimidine‐based inhibitor A.O. Prykhod’ko, S.M. Yarmoluk 13 Structure and Function of Disease Markers. 2017.vol. 2017, K. Ferenc,T. Pilżys, T. Skrzypek, Enterocyte in Intrauterine Growth Article ID 5238134, 9 pages, 2017. D. Garbicz, M. Marcinkowski, Retarded Pig Neonates. doi:10.1155/2017/5238134" M. Dylewska,P. Gładysz, O. Skorobogatov, Z. Gajewski, E. Grzesiuk, R. Zabielski. 14 Quantification of S‐ International Journal of Mass R. Rodriguez O. Vakulenko S. adenosylmethionine and S‐ Spectrometry 2017, 421: 279‐284. Ralchenko A. Kostiuk adenosylhomocysteine in human doi.org/10.1016/j.ijms.2017.08.0 L. Porublyova I. Konovets placenta and placental explants 02 I. Voronina under homocysteine treatment. M. Obolenskaya, 15 Biofilm formation and cellulose Res Microbiol./ 2017 McLaughlinK., expression by Bordetellaavium Jun;168(5):419‐430. FolorunsoA.O., 197N, the causative agent of DeeniY.Y., bordetellosis in birds and an FosterD., opportunistic respiratory pathogen https://doi.org/10.1016/j.resmic. GorbatiukO., in humans 2017.01.002 HapcaS.M., ImmoorC., KozaA., MohammedI.U., MoshynetsO., RogalskyS., ZawadzkiK., SpiersA.J. 16 DNA loop domain organization in Biochemical and biophysical Afanasieva, K., Chopei, M., nucleoids from cells of different research communications. ‐ 2017. Lozovik, A., Semenova, A., types. – 483(1). – pp.142‐146. Lukash, L., https://doi.org/10.1016/j.bbrc.20 Sivolob, A. 16.12.177 17 Mammalian verprolin CR16 acts as BiochemBiophys Res Kropyvko S. a modulator of ITSN scaffold Commun,V.484, p. 813‐819, 2017 Gryaznova T. proteins association with actin DOI: 10.1016/j.bbrc.2017.01.177 Morderer D. RynditchA.V. 18 Intra‐and interregional The FASEB Journal. – 2017. – Kononenko, O., Galatenko, V., coregulation of opioid genes: 31(5). – pp.1953‐1963. Anderson, M., broken symmetry in spinal circuits. https://doi.org/10.1096/fj.20160 Bazov, I., 1039R Watanabe, H., Zhou, X.W., Iatsyshyna, A., Mityakina, I., Yakovleva, T., Sarkisyan, D., Ponomarev, I. 19 Experimental biology and The canonical way to make a heart: medicine, 2017, 242 issue: 18, Piven O., β‐catenin and plakoglobin in heart page(s): 1735‐1745. Winata C. development and remodeling. https://doi.org/10.1177%2F1535 370217732737 20 Comparative molecular cytogenetic PloS one. – 2017. – Vol.12, N4. – Amosova A.V., Bolsheva N.L., characterization of seven e0175760. Zoshchuk S.A., Twardovska Deschampsia (Poaceae) species https://doi.org/10.1371/journal.p M.O., Yurkevich O.Y., Andreev
one.0175760 I.O., Samatadze T.E., Badaeva E.D., Kunakh V.A., Muravenko O.V. 21 The current state of steppe Biologia. – 2017. – Vol.72, N 1. – Parnikoza I. Yu., Andreev I. O., perennial plants populations: A P.24‐35. Bublyk O. M., Spiridonova K. case study on Iris pumila https://doi.org/10.1515/biolog‐ V., Gołębiewska J., Kubiak M., 2017‐0002 Kuczyńska A., Mystkowska K.,
Olędrzyńska N., Urasińska B., Ślęzak‐Parnikoza A., Górniak M., Wojciechowski K., Didukh Y. P., Kunakh V. A. 22 Peatland ecosystem processes in Scientific Reports. – 2017. – Vol.7. Loisel J., Yu Z., Beilman D. W., the Maritime Antarctic during – 12344. Kaiser K., Parnikoza I. warm climates https://doi.org/10.1038/s41598‐ 017‐12479‐0
23 Sagediopsis bayozturkii sp. nov. on Polar Record.‐ 2017:1‐5. Halıcı M. G., Güllü M., the lichen Acarosporamacrocyclos https://doi.org/10.1017/S003224 Parnikoza I . from Antarctica with a key to the 7417000043 known species of the genus (Ascomycota, Adelococcaceae) 24 Tardigrades from Larus Polar Biology – 2017: 1‐19. Kaczmarek Ł., Parnikoza, I., dominicanus Lichtenstein, 1823 https://doi.org/10.1007/s00300‐ Gawlak M., Esefeld J., Peter nests on the Argentine Islands 017‐2190‐4 H.‐U., Kozeretska I., (maritime Antarctic) Roszkowska M.
25 Analysis of EX5del4232ins268 and Genes and Diseases Volodymyr Pampukha, EX5del955 PAH gene mutations in 2017, V.4(Is.2), P.108‐110. Maryna Nechyporenko, Ukrainian patients with doi:10.1016/j.gendis.2016.11.004 Ludmila Livshyts phenylketonuria
[1,10]Phenanthroline based Methods and Applications in Kovalska V., Kuperman M., cyanine dyes as fluorescent probes Fluorescence. – 2017. – V. 5, N 4. Varzatskii O., Kryvorotenko D., for ribonucleic acids in live cells – 045002. Kinski E., Schikora M., Janko https://doi.org/10.1088/2050‐ C., Alexiou C., Yarmoluk S., 6120/aa8510 Mokhir A. 26 The manifestation of optical Methods and applications in Yu G Terent'yeva, V M centers in UV–Vis absorption fluorescence. – Dec2016 Methods Yashchuk, L A Zaika, O M and luminescence spectra of Appl. Fluoresc. 4 044010 Snitserova, M Yu Losytsky
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Spectral‐fluorescent study of the Spectrochimica Acta Part A: A.S. Tatikolov, interaction of the polymethine dye Molecular and Biomolecular T.M. Akimkin, probe Cyan 2 with chondroitin‐4‐ Spectroscopy. – 2017. – Vol. 177. I.G. Panova, sulfate – P. 93‐96. S.M. Yarmoluk https://doi.org/10.1016/j.saa.201 33 7.01.033 The Discovery of the Effect of Chemistry Select. – 2017. – Kuperman, M., closo‐Borate on Amyloid Fibril 2(34). – P. 10965‐10970. Chernii, S., Formation https://doi.org/10.1002/slct.2017 Varzatskii, O., (...), 01936 Yarmoluk, S., 34 Kovalska, V. Effective binding of Journal of Molecular Structure. – M.V. Kuperman, M.Yu. perhalogenated closo‐borates to 2017. – Vol. 1141. – P. 75‐80. Losytskyy, A.Yu. Bykov, serum albumins revealed by https://doi.org/10.1016/j.molstru S.M. Yarmoluk, spectroscopic and ITC studies c.2017.03.059 K.Yu. Zhizhin, N.T. Kuznetsov, O.A. Varzatskii, E. Gumienna‐Kontecka, 35 V.B. Kovalska. The impact of binding of Journal of Molecular Recognition. V. Kovalska, macrocyclic metal complexes on – 2017. –30(8):e2622. S. Chernii, amyloid fibrillization of insulin and https://doi.org/10.1002/jmr.2622 V. Cherepanov, lysozyme M. Losytskyy, V. Chernii, O. Varzatskii, A. Naumovets, 36 S. Yarmoluk. Dextran‐Polyacrilamide as Matrices International Journal of Polymer G. Teleegeev for Creation of Anticancer Science Volume 2017, Article ID N. Kutsevol, Nanocomposite. 4929857, 9 pages V. Chumachenko, https://www.hindawi.com/journa A Naumenko, ls/ijps/2017/4929857/ P. Telegeeva, S. Filipchenko, and Yu. Harahuts 37 The controversial role of Cancer research ‐2017.‐V.8.‐№ 5. Tyutyunnykova Anna, phospholipase C epsilon (PLC ) in ‐p.716‐729. Gennady Telegeev, cancer development and https://www.ncbi.nlm.nih.gov/p Anna Dubrovska 38 progression. mc/articles/PMC5381159/ Transient and stable vector Mutation Research ‐ Reviews in Stepanenko A.A., Heng. 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Kashuba Quercetin prevents type 1 diabetes Pharmacological Reports, 2017 O.Maksymchuk., A.Shysh, liver damage through inhibition of Dec; 69(6):1386‐1392. I.Rosohatska, M.Chashchyn CYP2E1 doi: 10.1016/j.pharep.2017.05.020. E pub 2017 Jun 24. 46 The First Space‐Related Study of a Orig Life Evol Biosph. ‐ 2017. – Podolich O., Zaets I., Kombucha Multimicrobial 47(2):169‐185 Kukharenko O., Orlovska I., Cellulose‐Forming Community: doi: 10.1007/s11084‐016‐9483‐4. Reva O., Khirunenko L., Preparatory Laboratory Sosnin M., Haidak A., Experiments. Shpylova S., Rohutskyy I., Kharina A., Skoryk М., Kremenskoy M., Klymchuk D., 47 Demets R., de Vera J.‐P. Kombucha Multimicrobial Astrobiology. ‐ 2017. – 17(5):459‐ Podolich O., Zaets I., Community under Simulated 469. Kukharenko O., Orlovska I., Spaceflight and Martian doi:10.1089/ast.2016.1480. Reva O., Khirunenko L., Sosnin Conditions. M., Haidak A., Shpylova S., 48 Rabbow E., Skoryk M., Kremenskoy M., Demets R., Kozyrovska N., de Vera J.‐P. Conductometric enzyme biosensor Sensors and Actuators B 239 Soldatkin O.O for patulin determination (2017) P. 1010‐1015. Stepurska K. DOI: 10.1016/j.snb.2016.08.121 Arkhypova V. Soldatkin A.P. El’skaya A. Lagarde F. 49 Dzyadevich S. Surface Plasmon Resonance Nanoscale Res. Lett. (2017) 12: Bakhmachuk A. Gorbatiuk O. Investigations of Bioselective 112. Rachkov A. Element Based on the doi:10.1186/s11671‐017‐1903‐5 Dons’koi B. Recombinant Protein A for Khristosenko R. Immunoglobulin Detection. Ushenin I. Peshkova V. 50 Soldatkin A. Improvement of amperometric Nanoscale Research Letters – Soldatkina O.V. transducer selectivity using 2017 – Vol. 12, art. №.594. Kucherenko I.S. Pyeshkova V. nanosized phenylenediamine films DOI: 10.1186/s11671‐017‐2353‐9 Alekseev S.A. Soldatkin O.O. 51 Dzyadevych S. 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60 A quantum chemical based toxicity SAR and QSAR in Environmental Gooch, A., Sizochenko, N., study of estimated reduction Research 28(2), pp. 133‐137, Sviatenko, L., Gorb, L., potential and hydrophobicity in 2017 Leszczynski, J. series of nitroaromatic compounds https://www.tandfonline.com/do i/abs/10.1080/1062936X.2017.12 86687 61 In silico kinetics of alkaline Environmental science. Processes Sviatenko, L.K., Gorb, L., hydrolysis of 1,3,5‐trinitro‐1,3,5‐ & impacts, 19(3), pp. 388‐392, Leszczynska, D., Okovytyy, S.I., triazinane (RDX): M06‐2X 2017 Shukla, M.K., Leszczynski, J. investigation DOI: 10.1039/c6em00565a 62 Gene therapy effects on structural Innovation in Aging, 2017, Vol. V. Bezrukov , T. Kvitnitskaya‐ changes in various organs of young V.1. ‐ No. S1.‐ P.897 Ryzhova , and old mice with diabetes https://www.ncbi.nlm.nih.gov/p S. Mikhalskiy , mc/articles/PMC6184551/ S. Lugovskoy , P. Klymenko , 63 O. Toporova Adv Tissue Eng Regen Med, Future Perspectives in Heart Volume 2 Issue 5 – 2017 Pathology Diagnosis and Therapy. Piven O. DOI: 10.15406/atroa.2017.02.000 How We Can Use the Micro RNA? 64 43 Placenta‐derived multipotent cells Placenta. – 2017. ‐ Vol. 57. – P. V. Shablii, P. Areshkov, T. express syncytin‐1 and posses 254. DOI: Bukreieva, I. Skrypkina, V. ability to fuse with trophoblast http://dx.doi.org/10.1016/j.place Nikulina, V. Dotsenko, V. nta.2017.07.109 Kyryk, G. Lobintseva 65 66 Endothelial monocyte-activating Fiziol. Zh. 2017; 63(6): 3‐8. N.A. Dorofeyeva, G.G. polypeptide-II improves DOI: https://doi.org/10.15407/fz6 Vorobyov, I.Y. Cherepaha, diastolic heart function and 3.06.003 A.I. Kornelyuk, V.F. Sagach vascular relaxation in streptozotocin-induced experimental diabetes 67 The influence of native MSC, Ukrainian Neurosurgical Journal Tsymbaliuk VI., interleukin‐10 and MSC transfected with interleukin‐10 gene on 2018;No 1:66‐72 Velichko OM., behavioral reactions of rats with Pichkur LD., EAE DOI: https://doi.org/10.25305/un Akinola ST., j.117776 Verbovska SA., Shuvalova NS.,
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68 Embryonic cardiospecific knockout Bulletin of the Taras Shevchenko Balatskyi V. V., Macewicz L. L., of α‐E‐catenin gene leads to National University of Kyiv. alteration of energy metabolism in Problems of regulation of Piven O. O. adult heart physiological functions – 2017. – V. 22. – № 2. – С. 65‐68.
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