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D05.2 Statement on the Completion of the Publication List D05.2 Statement on the completion of the publication list Deeping collaboration on novel biomolecular electronics based on “smart” nanomaterials WIDESPREAD-05- Grant agreement ID: 951887 Call reference: 2020-Twinning Start date: 1st October 2020 Duration: 36 months Deliverable identification Leading beneficiary: IMBG Related WP: WP5 Planned delivery date: M02 Related period: - Actual delivery date: M02 Dissemination level: PU Delivery status: Submitted Contributors: Beneficiaries Name(s) Institute of Molecular Biology and Genetics of Sergei Dzyadevych – Yanina Mishchuk NASU Zentrum Fur Soziale Innovation Gmbh Gorazd Weiss Reviews Version Reviewer Date V0.1 IMBG 22/11/2020 V0.2 ZSI 23/11/2020 IMBG publications in scientific journals reffered in Scopus, Web of Science Core Collection in 2017‐2020 2017………………………………………………………………………………………………………………………2 2018……………………………………………………………………………………………………………………..15 2019……………………………………………………………………………………………………………………..26 2020……………………………………………………………………………………………………………………..38 2017 1. Molecular modeling and molecular Journal of Molecular Graphics A.V. Rayevsky, M. Sharifi, dynamics simulation study of and Modelling ‐ 2017, V. 76. P. M.A. Tukalo archaeal leucyl‐tRNA synthetase in 289‐295. complex with different mischarged http://dx.doi.org/doi:10.1016/j.j tRNA in editing conformation mgm.2017.06.022 2. d(A)3d(T)3 and d(G)3d(C)3 B‐DNA Journal of Molecular Modeling 23 L Gorb, TA Zubatiuk, R mini‐helixes: the DFT/M06‐2x and (10), 289 (2017) Zubatyuk, D Hovorun, J DFT/B97‐D3 comparison of DOI: 10.1007/s00894‐017‐3449‐y Leszczynski geometrical and energetic characteristics 3. Enthalpy‐entropy compensation: Eur Biophys J. 2017 May; Dragan AI, Read CM, Crane‐ the role of solvation 46(4):301‐308. doi: Robinson C. 10.1007/s00249‐016‐1182‐6. https://www.researchgate.net/p ublication/309590885_Enthalpy‐ entropy_compensation_the_role _of_solvation 4. Izatizon, as an izatin‐ International Journal of Bolsunova Ol’ha I., Zaika thiosemicarbazone derivative, has Pharmaceutical Science Invention Leonid A., Potopalsky Anatoliy antiviral, anti‐tumor actions and no ‐2017 ‐V.6. ‐Is.5. – P.7‐9, Impact I., Voznyuk Anna V. side effects factor 1,695, Індія. http://www.ijpsi.org/Papers/Vol6 (5)/B06050709.pdf 5. A QM/QTAIM detailed look at the Journal of Biomolecular Structure Brovarets’ O.O., Voiteshenko, Watson‐Crick↔wobble tautomeric & Dynamics. – 2017. – DOI: I.S, Pérez‐Sánchez H.E., & transformations of the 2‐ 10.1080/07391102.2017.1331864 Hovorun D.M. aminopurine∙pyrimidine mispairs 6. A new mechanism of post‐transfer Journal of Biomolecular Structure Boyarshin K.S., Priss A.E., editing by aminoacyl‐tRNA and Dynamics. – 2017. – V. 35, N Rayevskiy A.V., Ilchenko M.M., synthetases: Catalysis of hydrolytic 3. – P. 669‐682. Dubey I.Ya., Kriklivyi I.A., reaction by bacterial‐type prolyl‐ https://doi.org/10.1080/0739110 Yaremchuk A.D., Tukalo M.A. tRNA synthetase 2.2016.1155171 7. Computational Modeling and Journal Biomol Struct Dyn. 2017 , Kravchuk VO, Savytskyi Molecular Dynamics Simulations of Vol.35, N13, 2772‐2788 . Impact OV, Odynets KO, Mykuliak Mammalian Cytoplasmic Tyrosyl‐ factor 3,123. VV, Kornelyuk AI. tRNA Synthetase and Its Complexes PMID: 27615678 with Substrates. DOI: 10.1080/07391102.2016.12 35512 8. A QM/QTAIM research under the New Journal of Chemistry 41 (15), OO Brovarets’, magnifying glass of the DPT 7232‐7243 (2017) IS Voiteshenko, H Pérez‐ tautomerisation of the wobble DOI:10.1039/c7nj00717e Sánchez, DM Hovorun mispairs involving 2‐aminopurine 9. Physico‐chemical profiles of the Physical Chemistry & Chemical OO Brovarets’, IS Voiteshenko, wobble↔ Watson‐Crick G*∙ 2AP Physics: 20 (1), 623‐636 (2017) DM Hovorun (w)↔ G∙ 2AP (WC) and A∙ 2AP DOI: 10.1039/c7cp05139e (w)↔ A*∙ 2AP (WC) tautomerisations: a QM/QTAIM comprehensive survey. 10 H.H. Repich, V.V. Orysyk, L.G. Synthesis, spectral characterization J. of Inorganic Biochemistry. 168, Palchykovska, S.I. Orysyk, Yu.L. of novel Pd(II), Pt(II) ‐ 98–106 (2017). Zborovskii, O.V. Vasylchenko, coordination compounds based on DOI:10.1016/j.jinorgbio.2016.12. O.V. Storozhuk, A.A. Biluk, V.V. N‐allylthioureas. Cytotoxic 004 Nikulina, L.V. Garmanchuk, V.I. properties and DNA binding ability Pekhnyo, M.V. Vovk 11 Complexes of Oligoribonucleotides Pharmaceuticals. – 2017. – V. 10, Melnichuk N. Semernikova L. with D‐Mannitol Inhibit №3. – P. 71. Tkachuk Z. 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Lukash, L., https://doi.org/10.1016/j.bbrc.20 Sivolob, A. 16.12.177 17 Mammalian verprolin CR16 acts as BiochemBiophys Res Kropyvko S. a modulator of ITSN scaffold Commun,V.484, p. 813‐819, 2017 Gryaznova T. proteins association with actin DOI: 10.1016/j.bbrc.2017.01.177 Morderer D. RynditchA.V. 18 Intra‐and interregional The FASEB Journal. – 2017. – Kononenko, O., Galatenko, V., coregulation of opioid genes: 31(5). – pp.1953‐1963. Anderson, M., broken symmetry in spinal circuits. https://doi.org/10.1096/fj.20160 Bazov, I., 1039R Watanabe, H., Zhou, X.W., Iatsyshyna, A., Mityakina, I., Yakovleva, T., Sarkisyan, D., Ponomarev, I. 19 Experimental biology and The canonical way to make a heart: medicine, 2017, 242 issue: 18, Piven O., β‐catenin and plakoglobin in heart page(s): 1735‐1745. Winata C. development and remodeling. https://doi.org/10.1177%2F1535 370217732737 20 Comparative molecular cytogenetic PloS one. – 2017. – Vol.12, N4. – Amosova A.V., Bolsheva N.L., characterization of seven e0175760. Zoshchuk S.A., Twardovska Deschampsia (Poaceae) species https://doi.org/10.1371/journal.p M.O., Yurkevich O.Y., Andreev one.0175760 I.O., Samatadze T.E., Badaeva E.D., Kunakh V.A., Muravenko O.V. 21 The current state of steppe Biologia. – 2017. – Vol.72, N 1. – Parnikoza I. Yu., Andreev I. O., perennial plants populations: A P.24‐35. Bublyk O. M., Spiridonova K. case study on Iris pumila https://doi.org/10.1515/biolog‐ V., Gołębiewska J., Kubiak M., 2017‐0002 Kuczyńska A., Mystkowska K., Olędrzyńska N., Urasińska B., Ślęzak‐Parnikoza A., Górniak M., Wojciechowski K., Didukh Y. P., Kunakh V. A. 22 Peatland ecosystem processes in Scientific Reports. – 2017. – Vol.7. Loisel J., Yu Z., Beilman D. W., the Maritime Antarctic during – 12344. Kaiser K., Parnikoza I. warm climates https://doi.org/10.1038/s41598‐ 017‐12479‐0 23 Sagediopsis bayozturkii sp. nov. on Polar Record.‐ 2017:1‐5. Halıcı M. G., Güllü M., the lichen Acarosporamacrocyclos https://doi.org/10.1017/S003224 Parnikoza I . from Antarctica with a key to the 7417000043 known species of the genus (Ascomycota, Adelococcaceae) 24 Tardigrades from Larus Polar Biology – 2017: 1‐19. Kaczmarek Ł., Parnikoza, I., dominicanus Lichtenstein, 1823 https://doi.org/10.1007/s00300‐ Gawlak M., Esefeld J., Peter nests on the Argentine Islands 017‐2190‐4 H.‐U., Kozeretska I., (maritime Antarctic) Roszkowska M. 25 Analysis of EX5del4232ins268 and Genes and Diseases Volodymyr Pampukha, EX5del955 PAH gene mutations in 2017, V.4(Is.2), P.108‐110. 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