Overexpression of a Novel Activator of PAK4, the CDK5 Kinase–Associated Protein CDK5RAP3, Promotes Hepatocellular Carcinoma Metastasis

Total Page:16

File Type:pdf, Size:1020Kb

Overexpression of a Novel Activator of PAK4, the CDK5 Kinase–Associated Protein CDK5RAP3, Promotes Hepatocellular Carcinoma Metastasis Published OnlineFirst March 8, 2011; DOI: 10.1158/0008-5472.CAN-10-4046 Cancer Molecular and Cellular Pathobiology Research Overexpression of a Novel Activator of PAK4, the CDK5 Kinase–Associated Protein CDK5RAP3, Promotes Hepatocellular Carcinoma Metastasis Grace Wing-Yan Mak1, Mandy Man-Lok Chan1, Veronica Yee-Law Leong1, Joyce Man-Fong Lee2,3, Tai-On Yau2, Irene Oi-Lin Ng2,3, and Yick-Pang Ching1,3 Abstract The CDK5 kinase regulatory subunit-associated protein 3 (CDK5RAP3 or C53/LZAP) regulates apoptosis induced by genotoxic stress. Although CDK5RAP3 has been implicated in cancer progression, its exact role in carcinogenesis is not well established. In this article, we report that CDK5RAP3 has an important prometastatic function in hepatocarcinogenesis. An examination of human hepatocellular carcinoma (HCC) samples revealed at least twofold overexpression of CDK5RAP3 transcripts in 58% (39/67) of HCC specimens when compared with corresponding nontumorous livers. CDK5RAP3 overexpression was associated with more aggressive biological behavior. In HCC cell lines, stable overexpression of CDK5RAP3 promoted, and small interfering RNA–mediated knockdown inhibited, tumorigenic activity and metastatic potential. We found that over- expression of CDK5RAP3 and p21-activated protein kinase 4 (PAK4) correlated in human HCCs, and that CDK5RAP3 was a novel binding partner of PAK4, and this binding enhanced PAK4 activity. siRNA-mediated knockdown of PAK4 in CDK5RAP3-expressing HCC cells reversed the enhanced cell invasiveness mediated by CDK5RAP3 overexpression, implying that PAK4 is essential for CDK5RAP3 function. Taken together, our findings reveal that CDK5RAP3 is widely overexpressed in HCC and that overexpression of CDK5RAP3 promotes HCC metastasis through PAK4 activation. Cancer Res; 71(8); 2949–58. Ó2011 AACR. Introduction suggests that CDK5RAP3 may function as a tumor suppressor. On the contrary, stable overexpression of the CDK5RAP3 The CDK5 kinase regulatory subunit-associated protein 3 isoform has been shown to promote hepatocellular carcinoma (CDK5RAP3, also called C53/LZAP) was first identified as a (HCC) and cardiac cell proliferation (6, 7), which indicates, binding partner of cyclin-dependent kinase 5 activator, furthermore, that CDK5RAP3 may enhance cell growth. p35nck5a, in yeast 2-hybrid screening (1). Northern analysis CDK5RAP3 is located at chromosome region 17q21.32, indicated that CDK5RAP3 is widely expressed in human which has been reported to be amplified in HCC; however, tissues, and the expression level is relatively constant in the the role of CDK5RAP3 in HCC has not been explored so far (8). heart, brain, skeletal muscle, placenta, lung, liver, kidney, and In this study, we found that the expression of CDK5RAP3 was pancreas (2). Overexpression of CDK5RAP3 has been shown to frequently upregulated in human HCCs at both transcript and sensitize cells to apoptosis induced by genotoxic stress (3). protein levels. More importantly, we detected a remarkable CDK5RAP3 can interact with a well-known tumor suppressor, enhancement of CDK5RAP3 expression in metastatic HCC. namely, the alternate reading frame (ARF; p14ARF), by which it Although little information is available on how CDK5RAP3 stabilizes and promotes the transcription activity of p53 (4). regulates cancer metastasis, we found that CDK5RAP3 is a More recently, CDK5RAP3 has been found to be underex- novel activator of p21-activated protein kinase 4 (PAK4) and pressed in head and neck cancers, and forced expression of activation of PAK4 can promote HCC cell migration. There- CDK5RAP3 can negatively regulate NF-kB activity (5), which fore, we provided, in this study, a novel mechanism by which CDK5RAP3 contributes to the metastasis of HCC by activation Authors' Affiliations: Departments of 1Anatomy and 2Pathology, Li Ka of PAK4. Shing Faculty of Medicine, and 3State Key Laboratory for Liver Research, The University of Hong Kong, Hong Kong, China Materials and Methods Note: Supplementary data for this article are available at Cancer Research Online (http://cancerres.aacrjournals.org/). Cell culture Corresponding Author: Yick-Pang Ching, Department of Anatomy, The University of Hong Kong, Room L1-43, Laboratory Block, Faculty of Human hepatoma cell lines PLC/PRF/5 and HepG2 were Medicine Building, Hong Kong. Phone: 852-28199434; Fax: 852- purchased from the American Type Culture Collection. The 28170857; E-mail: [email protected] authentication of these cell lines was ensured by the provider doi: 10.1158/0008-5472.CAN-10-4046 through cytogenetic analysis. No additional test was conducted Ó2011 American Association for Cancer Research. specifically for this study. The human HCC cell line www.aacrjournals.org 2949 Downloaded from cancerres.aacrjournals.org on September 25, 2021. © 2011 American Association for Cancer Research. Published OnlineFirst March 8, 2011; DOI: 10.1158/0008-5472.CAN-10-4046 Mak et al. SMMC-7721 was a gift from the Shanghai Institute of Biochem- Purification of protein istry and Cell Biology, Chinese Academy of Sciences. Cells were GST fusion proteins were purified using reduced glu- maintained in Dulbecco's modified Eagle medium (DMEM)- tathione (GSH)-sepharose beads by a procedure described high glucose (Life Technologies) supplemented with 1 mmol/L previously (1). His-tagged proteins were purified using Nickel- sodium pyruvate and 10% heat-inactivated FBS (JRH Bios- NTA agarose beads (Qiagen). Bacterial cells were lysed in a ciences). Cells were transfected with DNA constructs, using lysis buffer containing 20 mmol/L Tris (pH 7.5), 500 mmol/L Lipofectamine 2000 (Invitrogen) according to the man- NaCl, 5 mmol/L imidazole, 1 mmol/L dithiothreitol (DTT), ufacturer's protocol. For constructing the stable clones, cells 1 mmol/L phenylmethylsulfonyl fluoride, 1 mmol/L leupep- were transfected with expression constructs (Myc-CDK5RAP3 tin, and 10 mg/mL lysozyme. The protein was eluted with or shCDK5RAP3) and were selected with the correspond- 100 mmol/L imidazole in Tris buffer. ing antibiotic puromycin at 0.4 mg/mL (Sigma) or G418 at 0.8 mg/mL (Calbiochem), 48 hours after transfection. PAK4 kinase assay An in vitro gel kinase assay was conducted as described CDK5RAP3 antibody previously (12). GST-CDK5RAP3 and its mutants were incu- Rabbit anti-CDK5RAP3 polyclonal antibody was generated bated with His-PAK4 and GST-PAK4 peptide substrate [amino using purified glutathione S-transferase (GST)-CDK5RAP3 acid (aa) sequence AARRLSVASAK, named PAK4tide, designed fusion protein as antigen (Genscript Company). Then, the on the basis of the published result (13)] in PAK4 kinase buffer antibody was affinity purified by (CNBr)-GST-CDK5RAP3 and [50 mmol/L HEPES (pH 7.5), 5 mmol/L MgCl2, 100 mmol/L GST column. NaCl, and 1 mmol/L DTT] containing 10 mCi [g-32P]ATP. For peptide-kinase assay, GST and GST-CDK5RAP3 were incu- Immunohistochemistry bated with His-PAK4 in the presence of 1 mmol/L PAK4tide Immunohistochemical staining for CDK5RAP3 and phos- and 10 mCi [g-32P]ATP at 30C for 10 minutes (14). Peptides pho-PAK4 (p-PAK4) was done as described previously (9). with single mutation (AARRLAVASAK) were included as a Purified anti-CDK5RAP3 antibody and anti-p-PAK4 (Ser474) negative control. antibody (Cell Signaling Technology) were used at 1:100 and 1:50 dilutions, respectively. Scoring of the protein expression GST affinity pull-down assay was assessed by an experienced pathologist. GST and GST-CDK5RAP3 immobilized by GSH-sepharose beads (GE Healthcare) were incubated with His-PAK4 for 2 Real-time quantitative reverse transcriptase PCR hours at 4C, followed by washing 3 times with NETN buffer Quantitative PCR (qPCR) was done as described previously [50 mmol/L NaCl, 5 mmol/L EDTA, 50 mmol/L Tris (pH 8.0), (9). The sequence of TaqMan probes (Applied Biosystems) for 1% NP40]. The bound proteins were then visualized by CDK5RAP3 and PAK4 are 50-AGGAAAGATGGAGGACCAT- Western blotting. CAGCAC-30 and 50-GCGGCGCCGAGCCGATGAGTAACCC-30, respectively; cellular 18S rRNA was used as an internal control. Coimmunoprecipitation HEK293T cells, which were ectopically expressed with GFP- Colony formation assay PAK4 and Myc-CDK5RAP3, were lysed with NETN buffer sup- Cells were transiently transfected with plasmids expressing plemented with freshly prepared protease inhibitors (1 mmol/L CDK5RAP3 and shCDK5RAP3 and were selected with corre- phenylmethylsulfonyl fluoride, 1 mg/mL leupeptin, 2 mg/mL sponding antibiotics for 2 weeks. The experiments were done aprotinin, and 1 mmol/L DTT). Antibodies used for immuno- 3 times independently. precipitation include anti-Myc and rabbit anti-PAK4, and anti- bodies used for immunoblotting are rabbit anti-Myc, rabbit anti- Cell proliferation, soft agar growth, cell migration, and GFP, and rabbit anti-CDK5RAP3. invasion assays The procedure described by Leung and colleagues (10) and Confocal microscopy Wong and colleagues (11) was adopted. For soft agar assay, Cells were fixed with 4% paraformaldehyde and permeabi- colonies with diameter greater than 50 mmin10fieldswere lized with 0.2% Triton X-100 (9). Images were captured by a counted and data were shown as average number of colonies per confocal laser scanning microscope LSM510 (Carl Zeiss). field. The experiments were carried out 3 times independently. Statistical analysis Nude mouse xenograft assay The Student t test and the Mann–Whitney test were used CDK5RAP3 stable knockdown PLC/PRF/5 cells and control for statistical analysis of data. Tests were considered signifi- cells (5  106) were administered by s.c. injection into the right cant with P < 0.05. and left flanks of 6-week-old male nude mice, respectively. The larger (a) and smaller (b) diameters of a tumor were measured Results weekly. Tumor volume was estimated according to the formula: volume ¼ 1/2  a  b2; and it was measured from week 2 to CDK5RAP3 was overexpressed in human HCCs week 5. After 5 weeks, the mice were sacrificed in accordance To elucidate the role of CDK5RAP3 in human HCCs, we with institutional regulations for animal experiments. examined CDK5RAP3 transcripts in human HCCs by using 2950 Cancer Res; 71(8) April 15, 2011 Cancer Research Downloaded from cancerres.aacrjournals.org on September 25, 2021.
Recommended publications
  • Supplementary Materials
    Supplementary materials Supplementary Table S1: MGNC compound library Ingredien Molecule Caco- Mol ID MW AlogP OB (%) BBB DL FASA- HL t Name Name 2 shengdi MOL012254 campesterol 400.8 7.63 37.58 1.34 0.98 0.7 0.21 20.2 shengdi MOL000519 coniferin 314.4 3.16 31.11 0.42 -0.2 0.3 0.27 74.6 beta- shengdi MOL000359 414.8 8.08 36.91 1.32 0.99 0.8 0.23 20.2 sitosterol pachymic shengdi MOL000289 528.9 6.54 33.63 0.1 -0.6 0.8 0 9.27 acid Poricoic acid shengdi MOL000291 484.7 5.64 30.52 -0.08 -0.9 0.8 0 8.67 B Chrysanthem shengdi MOL004492 585 8.24 38.72 0.51 -1 0.6 0.3 17.5 axanthin 20- shengdi MOL011455 Hexadecano 418.6 1.91 32.7 -0.24 -0.4 0.7 0.29 104 ylingenol huanglian MOL001454 berberine 336.4 3.45 36.86 1.24 0.57 0.8 0.19 6.57 huanglian MOL013352 Obacunone 454.6 2.68 43.29 0.01 -0.4 0.8 0.31 -13 huanglian MOL002894 berberrubine 322.4 3.2 35.74 1.07 0.17 0.7 0.24 6.46 huanglian MOL002897 epiberberine 336.4 3.45 43.09 1.17 0.4 0.8 0.19 6.1 huanglian MOL002903 (R)-Canadine 339.4 3.4 55.37 1.04 0.57 0.8 0.2 6.41 huanglian MOL002904 Berlambine 351.4 2.49 36.68 0.97 0.17 0.8 0.28 7.33 Corchorosid huanglian MOL002907 404.6 1.34 105 -0.91 -1.3 0.8 0.29 6.68 e A_qt Magnogrand huanglian MOL000622 266.4 1.18 63.71 0.02 -0.2 0.2 0.3 3.17 iolide huanglian MOL000762 Palmidin A 510.5 4.52 35.36 -0.38 -1.5 0.7 0.39 33.2 huanglian MOL000785 palmatine 352.4 3.65 64.6 1.33 0.37 0.7 0.13 2.25 huanglian MOL000098 quercetin 302.3 1.5 46.43 0.05 -0.8 0.3 0.38 14.4 huanglian MOL001458 coptisine 320.3 3.25 30.67 1.21 0.32 0.9 0.26 9.33 huanglian MOL002668 Worenine
    [Show full text]
  • Identification and Analysis of the Mouse Basic/Helix-Loop-Helix
    中国科技论文在线 http://www.paper.edu.cn BBRC Biochemical and Biophysical Research Communications 350 (2006) 648–656 www.elsevier.com/locate/ybbrc Identification and analysis of the mouse basic/Helix-Loop-Helix transcription factor family Jing Li a,b, Qi Liu b, Mengsheng Qiu c, Yuchun Pan a,*, Yixue Li d,*, Tieliu Shi d,e,* a School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai 201101, China b School of Life Science and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China c Department of Anatomical Sciences and Neurobiology, School of Medicine, University of Louisville, Louisville, KY 40292, USA d Bioinformatics Center, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China e Bioinformation Center, Shanghai University, Shanghai 200444, China Received 23 August 2006 Available online 29 September 2006 Abstract The basic/Helix-Loop-Helix (bHLH) proteins are a family of transcription factors that regulates a variety of biological processes. Based on a previously defined consensus motif, we identified the complete set of bHLH protein family from the mouse proteome dat- abases and carried out a series of bioinformatics analysis. As results, 124 mouse bHLH proteins were identified in this study, and 28 of them were additional bHLH proteins beyond the previous report. These 124 mouse bHLH proteins were classified into groups from A to F by the nomenclature and phylogenetic analysis. Statistic analysis of the Gene Ontology annotation of these proteins showed that the bHLH proteins tend to perform functions related to cell differentiation and development. Gene function enrichmeznt analysis among six groups illuminated that the proteins in certain group tend to have special biology functions, so that the molecular function of the unchar- acterized proteins in groups could be inferred.
    [Show full text]
  • Cis-Regulatory Chromatin Contacts in Neural Cells Reveal Contributions
    bioRxiv preprint doi: https://doi.org/10.1101/494450; this version posted February 22, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 cis-Regulatory Chromatin Contacts in Neural Cells Reveal Contributions of Genetic Variants to 2 Complex Neurological Disorders 3 4 5 Authors: Michael Song1,2, Xiaoyu Yang1, Xingjie Ren1, Lenka Maliskova1, Bingkun Li1, Ian Jones1, 6 Chao Wang3, Fadi Jacob4,5, Kenneth Wu6, Michela Traglia7, Tsz Wai Tam1, Kirsty Jamieson1, Si-Yao 7 Lu8, Guo-Li Ming4,9,10,11, Jun Yao8, Lauren A. Weiss1,7, Jesse Dixon12, Luke M. Judge6,13, Bruce R 8 Conklin6,14, Hongjun Song4,9,10,15, Li Gan3, Yin Shen1,2,16* 9 10 11 Affiliation: 12 13 1Institute for Human Genetics, University of California, San Francisco, San Francisco, CA, USA 14 2Pharmaceutical Sciences and Pharmacogenomics Graduate Program, University of California, San 15 Francisco, San Francisco, CA, USA 16 3Gladstone Institute for Neurological Disorders, San Francisco, CA, USA 17 4Department of Neuroscience and Mahoney Institute for Neurosciences, Perelman School for Medicine, 18 University of Pennsylvania, Philadelphia, PA 19104, USA. 19 5The Solomon H. Snyder Department of Neuroscience, Johns Hopkins University School of Medicine, 20 Baltimore, MD 21205, USA. 21 6Gladstone Institute for Cardiovascular Disease, San Francisco, CA, USA 22 7Department of Psychiatry, University of California, San Francisco, San Francisco, CA, USA 23 8State Key Laboratory of Membrane Biology, Tsinghua-Peking Center for Life Sciences, School of Life 24 Sciences, Tsinghua University, Beijing, China.
    [Show full text]
  • Agricultural University of Athens
    ΓΕΩΠΟΝΙΚΟ ΠΑΝΕΠΙΣΤΗΜΙΟ ΑΘΗΝΩΝ ΣΧΟΛΗ ΕΠΙΣΤΗΜΩΝ ΤΩΝ ΖΩΩΝ ΤΜΗΜΑ ΕΠΙΣΤΗΜΗΣ ΖΩΙΚΗΣ ΠΑΡΑΓΩΓΗΣ ΕΡΓΑΣΤΗΡΙΟ ΓΕΝΙΚΗΣ ΚΑΙ ΕΙΔΙΚΗΣ ΖΩΟΤΕΧΝΙΑΣ ΔΙΔΑΚΤΟΡΙΚΗ ΔΙΑΤΡΙΒΗ Εντοπισμός γονιδιωματικών περιοχών και δικτύων γονιδίων που επηρεάζουν παραγωγικές και αναπαραγωγικές ιδιότητες σε πληθυσμούς κρεοπαραγωγικών ορνιθίων ΕΙΡΗΝΗ Κ. ΤΑΡΣΑΝΗ ΕΠΙΒΛΕΠΩΝ ΚΑΘΗΓΗΤΗΣ: ΑΝΤΩΝΙΟΣ ΚΟΜΙΝΑΚΗΣ ΑΘΗΝΑ 2020 ΔΙΔΑΚΤΟΡΙΚΗ ΔΙΑΤΡΙΒΗ Εντοπισμός γονιδιωματικών περιοχών και δικτύων γονιδίων που επηρεάζουν παραγωγικές και αναπαραγωγικές ιδιότητες σε πληθυσμούς κρεοπαραγωγικών ορνιθίων Genome-wide association analysis and gene network analysis for (re)production traits in commercial broilers ΕΙΡΗΝΗ Κ. ΤΑΡΣΑΝΗ ΕΠΙΒΛΕΠΩΝ ΚΑΘΗΓΗΤΗΣ: ΑΝΤΩΝΙΟΣ ΚΟΜΙΝΑΚΗΣ Τριμελής Επιτροπή: Aντώνιος Κομινάκης (Αν. Καθ. ΓΠΑ) Ανδρέας Κράνης (Eρευν. B, Παν. Εδιμβούργου) Αριάδνη Χάγερ (Επ. Καθ. ΓΠΑ) Επταμελής εξεταστική επιτροπή: Aντώνιος Κομινάκης (Αν. Καθ. ΓΠΑ) Ανδρέας Κράνης (Eρευν. B, Παν. Εδιμβούργου) Αριάδνη Χάγερ (Επ. Καθ. ΓΠΑ) Πηνελόπη Μπεμπέλη (Καθ. ΓΠΑ) Δημήτριος Βλαχάκης (Επ. Καθ. ΓΠΑ) Ευάγγελος Ζωίδης (Επ.Καθ. ΓΠΑ) Γεώργιος Θεοδώρου (Επ.Καθ. ΓΠΑ) 2 Εντοπισμός γονιδιωματικών περιοχών και δικτύων γονιδίων που επηρεάζουν παραγωγικές και αναπαραγωγικές ιδιότητες σε πληθυσμούς κρεοπαραγωγικών ορνιθίων Περίληψη Σκοπός της παρούσας διδακτορικής διατριβής ήταν ο εντοπισμός γενετικών δεικτών και υποψηφίων γονιδίων που εμπλέκονται στο γενετικό έλεγχο δύο τυπικών πολυγονιδιακών ιδιοτήτων σε κρεοπαραγωγικά ορνίθια. Μία ιδιότητα σχετίζεται με την ανάπτυξη (σωματικό βάρος στις 35 ημέρες, ΣΒ) και η άλλη με την αναπαραγωγική
    [Show full text]
  • Anti-CDK5RAP3 Antibody (ARG40022)
    Product datasheet [email protected] ARG40022 Package: 100 μl anti-CDK5RAP3 antibody Store at: -20°C Summary Product Description Rabbit Polyclonal antibody recognizes CDK5RAP3 Tested Reactivity Hu Tested Application WB Host Rabbit Clonality Polyclonal Isotype IgG Target Name CDK5RAP3 Antigen Species Human Immunogen Recombinant fusion protein corresponding to aa. 1-300 of Human CDK5RAP3 (NP_788276.1). Conjugation Un-conjugated Alternate Names IC53; PP1553; C53; LZAP; Protein HSF-27; OK/SW-cl.114; CDK5 regulatory subunit-associated protein 3; MST016; LXXLL/leucine-zipper-containing ARF-binding protein; CDK5 activator-binding protein C53; HSF-27 Application Instructions Application table Application Dilution WB 1:500 - 1:2000 Application Note * The dilutions indicate recommended starting dilutions and the optimal dilutions or concentrations should be determined by the scientist. Positive Control U-87 MG Calculated Mw 57 kDa Observed Size 65 kDa Properties Form Liquid Purification Affinity purified. Buffer PBS (pH 7.3), 0.02% Sodium azide and 50% Glycerol. Preservative 0.02% Sodium azide Stabilizer 50% Glycerol Storage instruction For continuous use, store undiluted antibody at 2-8°C for up to a week. For long-term storage, aliquot and store at -20°C. Storage in frost free freezers is not recommended. Avoid repeated freeze/thaw cycles. Suggest spin the vial prior to opening. The antibody solution should be gently mixed before use. www.arigobio.com 1/2 Note For laboratory research only, not for drug, diagnostic or other use. Bioinformation Gene Symbol CDK5RAP3 Gene Full Name CDK5 regulatory subunit associated protein 3 Background This gene encodes a protein that has been reported to function in signaling pathways governing transcriptional regulation and cell cycle progression.
    [Show full text]
  • CDK5: Key Regulator of Apoptosis and Cell Survival
    biomedicines Review CDK5: Key Regulator of Apoptosis and Cell Survival Rabih Roufayel * and Nimer Murshid * College of Engineering and Technology, American University of the Middle East, Kuwait City 15453, Kuwait * Correspondence: [email protected] (R.R.); [email protected] (N.M.); Tel.: +965-222-514-00 (R.R. & N.M.) Received: 28 October 2019; Accepted: 5 November 2019; Published: 6 November 2019 Abstract: The atypical cyclin-dependent kinase 5 (CDK5) is considered as a neuron-specific kinase that plays important roles in many cellular functions including cell motility and survival. The activation of CDK5 is dependent on interaction with its activator p35, p39, or p25. These activators share a CDK5-binding domain and form a tertiary structure similar to that of cyclins. Upon activation, CDK5/p35 complexes localize primarily in the plasma membrane, cytosol, and perinuclear region. Although other CDKs are activated by cyclins, binding of cyclin D and E showed no effect on CDK5 activation. However, it has been shown that CDK5 can be activated by cyclin I, which results in anti-apoptotic functions due to the increased expression of Bcl-2 family proteins. Treatment with the CDK5 inhibitor roscovitine sensitizes cells to heat-induced apoptosis and its phosphorylation, which results in prevention of the apoptotic protein functions. Here, we highlight the regulatory mechanisms of CDK5 and its roles in cellular processes such as gene regulation, cell survival, and apoptosis. Keywords: CDK5; p25 phosphorylation; p35; p39; neural apoptosis 1. Introduction The proline-directed serine/threonine cyclin-dependent kinase 5 (CDK5) is an atypical member of the well-studied family of cyclin-dependent kinases (CDKs) [1].
    [Show full text]
  • Kinome Expression Profiling to Target New Therapeutic Avenues in Multiple Myeloma
    Plasma Cell DIsorders SUPPLEMENTARY APPENDIX Kinome expression profiling to target new therapeutic avenues in multiple myeloma Hugues de Boussac, 1 Angélique Bruyer, 1 Michel Jourdan, 1 Anke Maes, 2 Nicolas Robert, 3 Claire Gourzones, 1 Laure Vincent, 4 Anja Seckinger, 5,6 Guillaume Cartron, 4,7,8 Dirk Hose, 5,6 Elke De Bruyne, 2 Alboukadel Kassambara, 1 Philippe Pasero 1 and Jérôme Moreaux 1,3,8 1IGH, CNRS, Université de Montpellier, Montpellier, France; 2Department of Hematology and Immunology, Myeloma Center Brussels, Vrije Universiteit Brussel, Brussels, Belgium; 3CHU Montpellier, Laboratory for Monitoring Innovative Therapies, Department of Biologi - cal Hematology, Montpellier, France; 4CHU Montpellier, Department of Clinical Hematology, Montpellier, France; 5Medizinische Klinik und Poliklinik V, Universitätsklinikum Heidelberg, Heidelberg, Germany; 6Nationales Centrum für Tumorerkrankungen, Heidelberg , Ger - many; 7Université de Montpellier, UMR CNRS 5235, Montpellier, France and 8 Université de Montpellier, UFR de Médecine, Montpel - lier, France ©2020 Ferrata Storti Foundation. This is an open-access paper. doi:10.3324/haematol. 2018.208306 Received: October 5, 2018. Accepted: July 5, 2019. Pre-published: July 9, 2019. Correspondence: JEROME MOREAUX - [email protected] Supplementary experiment procedures Kinome Index A list of 661 genes of kinases or kinases related have been extracted from literature9, and challenged in the HM cohort for OS prognostic values The prognostic value of each of the genes was computed using maximally selected rank test from R package MaxStat. After Benjamini Hochberg multiple testing correction a list of 104 significant prognostic genes has been extracted. This second list has then been challenged for similar prognosis value in the UAMS-TT2 validation cohort.
    [Show full text]
  • 64Bc7f692bda8b495160eec851
    Submit a Manuscript: http://www.f6publishing.com World J Gastroenterol 2018 September 14; 24(34): 3898-3907 DOI: 10.3748/wjg.v24.i34.3898 ISSN 1007-9327 (print) ISSN 2219-2840 (online) ORIGINAL ARTICLE Basic Study Low expression of CDK5RAP3 and DDRGK1 indicates a poor prognosis in patients with gastric cancer Jian-Xian Lin, Xin-Sheng Xie, Xiong-Feng Weng, Chao-Hui Zheng, Jian-Wei Xie, Jia-Bin Wang, Jun Lu, Qi-Yue Chen, Long-Long Cao, Mi Lin, Ru-Hong Tu, Ping Li, Chang-Ming Huang Jian-Xian Lin, Xin-Sheng Xie, Xiong-Feng Weng, Chao- Fujian Medical University, No. 2016QH024; Scientific and Hui Zheng, Jian-Wei Xie, Jia-Bin Wang, Jun Lu, Qi-Yue Technological Innovation Joint Capital Projects of Fujian Chen, Long-Long Cao, Mi Lin, Ru-Hong Tu, Ping Li, Chang- Province, No. 2016Y9031; Minimally Invasive Medical Center Ming Huang, Department of Gastric Surgery, Fujian Medical of Fujian Province, No. 2011708#; and the Young and Middle- University Union Hospital, Fuzhou 350001, Fujian Province, aged Talent Training Project of the Fujian Provincial Health and China Family Planning Commission, No. 2014-ZQNJC-13. Jian-Xian Lin, Xin-Sheng Xie, Xiong-Feng Weng, Chao- Institutional review board statement: This study was Hui Zheng, Jian-Wei Xie, Jia-Bin Wang, Jun Lu, Qi-Yue reviewed and approved by the Ethics Committee of the Fujian Chen, Long-Long Cao, Mi Lin, Ru-Hong Tu, Ping Li, Chang- Medical University Union Hospital. Ming Huang, Key Laboratory of Ministry of Education of Gastrointestinal Cancer, Fujian Medical University, Fuzhou Conflict-of-interest statement: To the best of our knowledge, 350108, Fujian Province, China no conflict of interest exists.
    [Show full text]
  • Membranes of Human Neutrophils Secretory Vesicle Membranes And
    Downloaded from http://www.jimmunol.org/ by guest on September 30, 2021 is online at: average * The Journal of Immunology , 25 of which you can access for free at: 2008; 180:5575-5581; ; from submission to initial decision 4 weeks from acceptance to publication J Immunol doi: 10.4049/jimmunol.180.8.5575 http://www.jimmunol.org/content/180/8/5575 Comparison of Proteins Expressed on Secretory Vesicle Membranes and Plasma Membranes of Human Neutrophils Silvia M. Uriarte, David W. Powell, Gregory C. Luerman, Michael L. Merchant, Timothy D. Cummins, Neelakshi R. Jog, Richard A. Ward and Kenneth R. McLeish cites 44 articles Submit online. Every submission reviewed by practicing scientists ? is published twice each month by Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts http://jimmunol.org/subscription Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html http://www.jimmunol.org/content/suppl/2008/04/01/180.8.5575.DC1 This article http://www.jimmunol.org/content/180/8/5575.full#ref-list-1 Information about subscribing to The JI No Triage! Fast Publication! Rapid Reviews! 30 days* • Why • • Material References Permissions Email Alerts Subscription Supplementary The Journal of Immunology The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 2008 by The American Association of Immunologists All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. This information is current as of September 30, 2021. The Journal of Immunology Comparison of Proteins Expressed on Secretory Vesicle Membranes and Plasma Membranes of Human Neutrophils1 Silvia M.
    [Show full text]
  • CDK5RAP3 Antibody - N-Terminal Region Rabbit Polyclonal Antibody Catalog # AI14753
    10320 Camino Santa Fe, Suite G San Diego, CA 92121 Tel: 858.875.1900 Fax: 858.622.0609 CDK5RAP3 antibody - N-terminal region Rabbit Polyclonal Antibody Catalog # AI14753 Specification CDK5RAP3 antibody - N-terminal region - Product Information Application WB Primary Accession Q96JB5 Other Accession NM_176096, NP_788276 Reactivity Human, Mouse, Rat, Rabbit, Pig, Horse, Bovine, Dog Predicted Human, Mouse, Rat, Rabbit, WB Suggested Anti-CDK5RAP3 Antibody Horse, Bovine, Titration: 1.0 μg/ml Dog Positive Control: THP-1 Whole Cell Host Rabbit Clonality Polyclonal Calculated MW 56kDa KDa CDK5RAP3 antibody - N-terminal region - References CDK5RAP3 antibody - N-terminal region - Additional Information Chen J.,et al.Biochem. Biophys. Res. Commun. 294:161-166(2002). Gene ID 80279 Xie Y.H.,et al.Cell Res. 13:83-91(2003). Favier A.-L.,et al.Submitted (JAN-2001) to the Alias Symbol C53, HSF-27, EMBL/GenBank/DDBJ databases. IC53, LZAP, Shichijo S.,et al.Submitted (MAY-2001) to the MST016, EMBL/GenBank/DDBJ databases. OK/SW-cl.114 Ota T.,et al.Nat. Genet. 36:40-45(2004). Other Names CDK5 regulatory subunit-associated protein 3, CDK5 activator-binding protein C53, LXXLL/leucine-zipper-containing ARF-binding protein, Protein HSF-27, CDK5RAP3, IC53, LZAP {ECO:0000303|PubMed:20164180} Format Liquid. Purified antibody supplied in 1x PBS buffer with 0.09% (w/v) sodium azide and 2% sucrose. Reconstitution & Storage Add 50 ul of distilled water. Final anti-CDK5RAP3 antibody concentration is 1 mg/ml in PBS buffer with 2% sucrose. For longer periods of storage, store at 20°C. Avoid repeat freeze-thaw cycles.
    [Show full text]
  • Requirement of DNMT1 to Orchestrate Epigenomic Reprogramming for NPM-ALK–Driven Lymphomagenesis
    Published Online: 11 December, 2020 | Supp Info: http://doi.org/10.26508/lsa.202000794 Downloaded from life-science-alliance.org on 28 September, 2021 Research Article Requirement of DNMT1 to orchestrate epigenomic reprogramming for NPM-ALK–driven lymphomagenesis Elisa Redl1, Raheleh Sheibani-Tezerji2, Crhistian de Jesus Cardona3 , Patricia Hamminger4, Gerald Timelthaler5, Melanie Rosalia Hassler1,6,Masaˇ Zrimsekˇ 1, Sabine Lagger7 , Thomas Dillinger1,2, Lorena Hofbauer1,8, Kristina Draganic´ 1 , Andreas Tiefenbacher1,2 , Michael Kothmayer9, Charles H Dietz10, Bernard H Ramsahoye11, Lukas Kenner1,7,12,13 , Christoph Bock10,14, Christian Seiser9, Wilfried Ellmeier4, Gabriele Schweikert15,16, Gerda Egger1,2 Malignant transformation depends on genetic and epigenetic cancer (1): In malignant cells, the genome is globally hypomethy- events that result in a burst of deregulated gene expression and lated, whereas short CpG-dense regions, referred to as CpG is- chromatin changes. To dissect the sequence of events in this lands (CGIs) generally show an increase in methylation (1, 2). CGIs process, we used a T-cell–specific lymphoma model based on the are often found in gene promoter regions and hypermethylated human oncogenic nucleophosmin-anaplastic lymphoma kinase CGIs have been associated with the silencing of tumor suppressor (NPM-ALK) translocation. We find that transformation of T cells genes in diverse cancers. However, linking specificDNAmethyl- shifts thymic cell populations to an undifferentiated immuno- ation differences with extensive expression changes during tu- phenotype, which occurs only after a period of latency, accom- morigenesis in a cause-and-effect relationship remains challenging panied by induction of the MYC-NOTCH1 axis and deregulation of because of the crosstalk of diverse epigenetic regulators.
    [Show full text]
  • GABRA1 and STXBP1: Novel Genetic Causes of Dravet Syndrome Gemma L
    GABRA1 and STXBP1: Novel genetic causes of Dravet syndrome Gemma L. Carvill, Sarah Weckhuysen, Jacinta M. McMahon, et al. Neurology published online March 12, 2014 DOI 10.1212/WNL.0000000000000291 This information is current as of March 12, 2014 The online version of this article, along with updated information and services, is located on the World Wide Web at: http://www.neurology.org/content/early/2014/03/12/WNL.0000000000000291.full.html Neurology ® is the official journal of the American Academy of Neurology. Published continuously since 1951, it is now a weekly with 48 issues per year. Copyright © 2014 American Academy of Neurology. All rights reserved. Print ISSN: 0028-3878. Online ISSN: 1526-632X. Published Ahead of Print on March 12, 2014 as 10.1212/WNL.0000000000000291 GABRA1 and STXBP1: Novel genetic causes of Dravet syndrome Gemma L. Carvill, PhD ABSTRACT Sarah Weckhuysen, MD Objective: To determine the genes underlying Dravet syndrome in patients who do not have an Jacinta M. McMahon, SCN1A mutation on routine testing. BSc Methods: We performed whole-exome sequencing in 13 SCN1A-negative patients with Dravet syn- Corinna Hartmann drome and targeted resequencing in 67 additional patients to identify new genes for this disorder. Rikke S. Møller, MSc, PhD Results: We detected disease-causing mutations in 2 novel genes for Dravet syndrome, with GABRA1 STXBP1 Helle Hjalgrim, MD, PhD mutations in in 4 cases and in 3. Furthermore, we identified 3 patients with SCN1A SCN1A Joseph Cook, MS previously undetected mutations, suggesting that mutations occur in even more ; Eileen Geraghty, BA than the currently accepted 75% of cases.
    [Show full text]