Genes Involved in Amelogenesis Imperfecta. Part I
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Oral Health in Prevalent Types of Ehlers–Danlos Syndromes
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Ghent University Academic Bibliography J Oral Pathol Med (2005) 34: 298–307 ª Blackwell Munksgaard 2005 Æ All rights reserved www.blackwellmunksgaard.com/jopm Oral health in prevalent types of Ehlers–Danlos syndromes Peter J. De Coster1, Luc C. Martens1, Anne De Paepe2 1Department of Paediatric Dentistry, Centre for Special Care, Paecamed Research, Ghent University, Ghent; 2Centre for Medical Genetics, Ghent University Hospital, Ghent, Belgium BACKGROUND: The Ehlers–Danlos syndromes (EDS) Introduction comprise a heterogenous group of heritable disorders of connective tissue, characterized by joint hypermobility, The Ehlers–Danlos syndromes (EDS) comprise a het- skin hyperextensibility and tissue fragility. Most EDS erogenous group of heritable disorders of connective types are caused by mutations in genes encoding different tissue, largely characterized by joint hypermobility, skin types of collagen or enzymes, essential for normal pro- hyperextensibility and tissue fragility (1) (Fig. 1). The cessing of collagen. clinical features, modes of inheritance and molecular METHODS: Oral health was assessed in 31 subjects with bases differ according to the type. EDS are caused by a EDS (16 with hypermobility EDS, nine with classical EDS genetic defect causing an error in the synthesis or and six with vascular EDS), including signs and symptoms processing of collagen types I, III or V. The distribution of temporomandibular disorders (TMD), alterations of and function of these collagen types are displayed in dental hard tissues, oral mucosa and periodontium, and Table 1. At present, two classifications of EDS are was compared with matched controls. -
Human Identification by Amelogenin Test in Libyans
American Journal of www.biomedgrid.com Biomedical Science & Research ISSN: 2642-1747 --------------------------------------------------------------------------------------------------------------------------------- Research Article Copyright@ Samir Elmrghni Human Identification by Amelogenin Test in Libyans Samir Elmrghni* and Mahmoud Kaddura Department of Forensic Medicine and Toxicology, University of Benghazi, Libya *Corresponding author: Samir Elmrghni, Faculty of Medicine, Department of Forensic Medicine and Toxicology, University of Benghazi-Libya, Benghazi, Libya. To Cite This Article: Samir Elmrghni. Human Identification by Amelogenin Test in Libyans. Am J Biomed Sci & Res. 2019 - 3(6). AJBSR. MS.ID.000737. DOI: 10.34297/AJBSR.2019.03.000737 Received: May 25, 2019 | Published: July 11, 2019 Abstract Sex typing is essential in medical diagnosis of sex-linked disease and forensic science. Gender for criminal evidence of offender is usually as reported the anomalous amelogenin results of 2 male samples (out of 238 males) represented as females (Y deletions) and another 2 samples the initial information for investigation. For individualization, identification of gender is performed in addition to the STR markers recently. We amelogenin results of the controversial samples, DNA was further used in SRY and Y-STR typing. All samples typed as males but two showed with with (X deletions) in Benghazi (Libya). The frequency in both was about 0.8%. Higher than those of the other populations reported. To confirm X chromosomes. From the results, it was highly suggested that for the controversial cases of human gender identification with amelogenin tests, amplificationKeywords: Amelogenin; of SRY gene Libyans or/and Y-STR markers will be adopted to confirm the gender [1]. Introduction gene (AMG) was precisely mapped in the p22 region on the X systems used to determine if the sample being tested is of male gene was first isolated and sequenced [2]. -
Mutational Analysis of Candidate Genes in 24 Amelogenesis
Eur J Oral Sci 2006; 114 (Suppl. 1): 3–12 Copyright Ó Eur J Oral Sci 2006 Printed in Singapore. All rights reserved European Journal of Oral Sciences Jung-Wook Kim1,2, James P. Mutational analysis of candidate genes Simmer1, Brent P.-L. Lin3, Figen Seymen4, John D. Bartlett5, Jan C.-C. in 24 amelogenesis imperfecta families Hu1 1University of Michigan School of Dentistry, University of Michigan Dental Research 2 Kim J-W, Simmer JP, Lin BP-L, Seymen F, Bartlett JD, Hu JC-C. Mutational analysis Laboratory, Ann Arbor, MI, USA; Seoul National University, College of Dentistry, of candidate genes in 24 amelogenesis imperfecta families. Eur J Oral Sci 2006; 114 Department of Pediatric Dentistry & Dental (Suppl. 1): 3–12 Ó Eur J Oral Sci, 2006 Research Institute, Seoul, Korea; 3UCSF School of Dentistry, Department of Growth and Amelogenesis imperfecta (AI) is a heterogeneous group of inherited defects in dental Development, San Francisco, CA, USA; 4 enamel formation. The malformed enamel can be unusually thin, soft, rough and University of Istanbul, Faculty of Dentistry, stained. The strict definition of AI includes only those cases where enamel defects Department of Pedodontics, apa, Istanbul, Turkey; 5The Forsyth Institute, Harvard-Forsyth occur in the absence of other symptoms. Currently, there are seven candidate genes for Department of Oral Biology, Boston, MA, USA AI: amelogenin, enamelin, ameloblastin, tuftelin, distal-less homeobox 3, enamelysin, and kallikrein 4. To identify sequence variations in AI candidate genes in patients with isolated enamel defects, and to deduce the likely effect of each sequence variation on Jan C.-C. -
Tooth Enamel and Its Dynamic Protein Matrix
International Journal of Molecular Sciences Review Tooth Enamel and Its Dynamic Protein Matrix Ana Gil-Bona 1,2,* and Felicitas B. Bidlack 1,2,* 1 The Forsyth Institute, Cambridge, MA 02142, USA 2 Department of Developmental Biology, Harvard School of Dental Medicine, Boston, MA 02115, USA * Correspondence: [email protected] (A.G.-B.); [email protected] (F.B.B.) Received: 26 May 2020; Accepted: 20 June 2020; Published: 23 June 2020 Abstract: Tooth enamel is the outer covering of tooth crowns, the hardest material in the mammalian body, yet fracture resistant. The extremely high content of 95 wt% calcium phosphate in healthy adult teeth is achieved through mineralization of a proteinaceous matrix that changes in abundance and composition. Enamel-specific proteins and proteases are known to be critical for proper enamel formation. Recent proteomics analyses revealed many other proteins with their roles in enamel formation yet to be unraveled. Although the exact protein composition of healthy tooth enamel is still unknown, it is apparent that compromised enamel deviates in amount and composition of its organic material. Why these differences affect both the mineralization process before tooth eruption and the properties of erupted teeth will become apparent as proteomics protocols are adjusted to the variability between species, tooth size, sample size and ephemeral organic content of forming teeth. This review summarizes the current knowledge and published proteomics data of healthy and diseased tooth enamel, including advancements in forensic applications and disease models in animals. A summary and discussion of the status quo highlights how recent proteomics findings advance our understating of the complexity and temporal changes of extracellular matrix composition during tooth enamel formation. -
Spectrum of PEX1 and PEX6 Variants in Heimler Syndrome
European Journal of Human Genetics (2016) 24, 1565–1571 Official Journal of The European Society of Human Genetics www.nature.com/ejhg ARTICLE Spectrum of PEX1 and PEX6 variants in Heimler syndrome Claire EL Smith1, James A Poulter1, Alex V Levin2,3,4, Jenina E Capasso4, Susan Price5, Tamar Ben-Yosef6, Reuven Sharony7, William G Newman8,9, Roger C Shore10, Steven J Brookes10, Alan J Mighell1,11,12 and Chris F Inglehearn*,1,12 Heimler syndrome (HS) consists of recessively inherited sensorineural hearing loss, amelogenesis imperfecta (AI) and nail abnormalities, with or without visual defects. Recently HS was shown to result from hypomorphic mutations in PEX1 or PEX6,both previously implicated in Zellweger Syndrome Spectrum Disorders (ZSSD). ZSSD are a group of conditions consisting of craniofacial and neurological abnormalities, sensory defects and multi-organ dysfunction. The finding of HS-causing mutations in PEX1 and PEX6 shows that HS represents the mild end of the ZSSD spectrum, though these conditions were previously thought to be distinct nosological entities. Here, we present six further HS families, five with PEX6 variants and one with PEX1 variants, and show the patterns of Pex1, Pex14 and Pex6 immunoreactivity in the mouse retina. While Ratbi et al. found more HS-causing mutations in PEX1 than in PEX6, as is the case for ZSSD, in this cohort PEX6 variants predominate, suggesting both genes play a significant role in HS. The PEX6 variant c.1802G4A, p.(R601Q), reported previously in compound heterozygous state in one HS and three ZSSD cases, was found in compound heterozygous state in three HS families. -
International Journal of Dentistry and Oral Health Volume 4 Issue 10, September 2018
International Journal of Dentistry and Oral Health Volume 4 Issue 10, September 2018 International Journal of Dentistry and Oral Health Case Report ISSN 2471-657X Amelogenesis Imperfecta in Primary Dentition-A Case of Full Mouth Rehabilitation Revathy Viswanathan1, Janak Harish Kumar*2, Suganthi3 1Department of Pedodontics, Tamilnadu Government Dental College and Hospital, Chennai, Tamilnadu, India 2Intern, Department of Pedodontics, Tamilnadu Government Dental College and Hospital, Chennai, Tamilnadu, India 3Department of Pedodontics, Tamilnadu Government Dental College and Hospital, Chennai, Tamilnadu, India Abstract The most common anomalies of dental hard tissues include hereditary defects of enamel. Amelogenesis imperfecta (AI) has been described as a complex group of hereditary conditions that disturbs the developing enamel and exists independent of any related systemic disorder. This clinical case report describes the diagnosis and management of hypoplastic amelogenesis imperfecta in a 5-year-old child. The treatment objectives were to improve aesthetics, improve periodontal health, prevent further loss of tooth structure, and improve the child’s confidence. The treatment plan was to restore the affected teeth with full coverage restorations. Treatment involved placement of composite strip crowns on maxillary anterior teeth and stainless steel crowns on the posterior teeth followed by fluoride varnish application in the upper and lower arches. A 6-month follow-up showed great aesthetic and psychological improvements in the patient. Keywords: Amelogenesis imperfecta, Deciduous dentition, Composite strip crowns, Stainless steel crowns Corresponding author: Janak Harish Kumar teeth and can occur in both primary and permanent dentition which Intern, Department of Pedodontics and Preventive dentistry, results in the teeth being small, pitted, grooved and fragile with Tamilnadu Government Dental College and Hospital, Chennai, India. -
Assessment Genetics Mutations in Genes AMELX, ENAM, MMP20 and FAM83H in Inducate Amelogenesis Imperfecta Syndrome Shahin Asadi*
Haematology Open Access Open Journal Review Assessment Genetics Mutations in Genes AMELX, ENAM, MMP20 and FAM83H in Inducate Amelogenesis Imperfecta Syndrome Shahin Asadi* Director of the Division of Medical Genetics and Molecular Research, Molecular Medicine, Genetics Harvard University, USA *Correspondence to: Shahin Asadi; Director of the Division of Medical Genetics and Molecular Research, Molecular Medicine, Genetics Harvard University, USA; E-mail: [email protected] Received: March 28th, 2019; Revised: March 29th, 2019; Accepted: March 29th, 2019; Published: March 30th, 2019 Citation: Carlos TJ, Ignacio HD, Xavier SI, Ariel LE. Assessment genetics mutations in genes AMELX,ENAM, MMP20 and FAM83H in inducate amelogenesis imperfecta syndrome. Haemat Open A Open J. 2019; I(1): 5-8. ABSTRACT Defective amelogenesis syndrome is a genetic disorder in the development of teeth. The researchers described at least 14 types of incomplete amelogenesis disorders. Mutations in the AMELX, ENAM, MMP20, and FAM83H genes can cause malformation of the amelogenesis syndrome. Keywords: Amelogenesis syndrome, AMELX, ENAM, MMP20, FAM83H genes, Teeth disorders.. GENERALIZATIONS OF INCOMPLETE AMELOGENESIS cific dental disorders and hereditary patterns. Additionally, incomplete SYNDROME amelogenesis syndrome can occur alone without any other symptoms or symptoms, or it can occur as part of a syndrome that affects different Defective amelogenesis syndrome is a genetic disorder in the develop- parts of the body.2 ment of teeth. This condition causes the teeth to be abnormally small, colored, pitted or perforated, and are prone to wear and breakage. Other Figure 2. Another view of dental disorders in amelogenesis syndrome dental disorders may also occur in incomplete amelogenesis syndrome. These defects, which vary among people affected, can affect the teeth (the child) and permanent teeth (adults).1 Figure 1. -
Amelogenin Gene Influence on Enamel Defects of Cleft Lip and Palate Patients
ORIGINAL RESEARCH Genetic and Molecular Biology Amelogenin gene influence on enamel defects of cleft lip and palate patients Abstract: The aim of this study was to investigate the occurrence of mutations in the amelogenin gene (AMELX) in patients with cleft lip Fernanda Veronese OLIVEIRA(a) Thiago José DIONÍSIO(b) and palate (CLP) and enamel defects (ED). A total of 165 patients were Lucimara Teixeira NEVES(b) divided into four groups: with CLP and ED (n=46), with CLP and with- Maria Aparecida Andrade out ED (n = 34), without CLP and with ED (n = 34), and without CLP Moreira MACHADO(a) Carlos Ferreira SANTOS(b) or ED (n = 51). Genomic DNA was extracted from saliva followed by Thais Marchini OLIVEIRA(a) conducting a Polymerase Chain Reaction and direct DNA sequencing of exons 2 through 7 of AMELX. Mutations were found in 30% (n = 14), (a) Department of Pediatric Dentistry, 35% (n = 12), 11% (n = 4) and 13% (n = 7) of the subjects from groups 1, 2, Orthodontics and Community Health, Bauru 3 and 4, respectively. Thirty seven mutations were detected and distrib- School of Dentistry, University of São Paulo, Bauru, SP, Brazil. uted throughout exons 2 (1 mutation – 2.7%), 6 (30 mutations – 81.08%) and 7 (6 mutations – 16.22%) of AMELX. No mutations were found in (b) Department of Biological Sciences, Bauru School of Dentistry, University of São Paulo, exons 3, 4 or 5. Of the 30 mutations found in exon 6, 43.34% (n = 13), Bauru, SP, Brazil. 23.33% (n = 7), 13.33% (n = 4) and 20% (n = 6) were found in groups 1, 2, 3 and 4, respectively. -
Discovery of Genes by Phylocsf Supplemental
Supplemental Materials for Discovery of high-confidence human protein-coding genes and exons by whole-genome PhyloCSF helps elucidate 118 GWAS loci Supplemental Methods ....................................................................................................................... 2 Supplemental annotation methods ........................................................................................................... 2 Manual annotation overview ...................................................................................................................................... 2 Summary diagram for the workflow used in this study ................................................................................. 3 Transcriptomics analysis ............................................................................................................................................. 3 Comparative annotation ............................................................................................................................................... 4 Overlap of novel annotations with transposon sequences ........................................................................... 6 Assessing the novelty of annotations ...................................................................................................................... 7 Additional considerations for the annotation of PCCRs in other species ............................................... 7 PhyloCSF and browser tracks .................................................................................................................... -
Supplementary Table S4. FGA Co-Expressed Gene List in LUAD
Supplementary Table S4. FGA co-expressed gene list in LUAD tumors Symbol R Locus Description FGG 0.919 4q28 fibrinogen gamma chain FGL1 0.635 8p22 fibrinogen-like 1 SLC7A2 0.536 8p22 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 DUSP4 0.521 8p12-p11 dual specificity phosphatase 4 HAL 0.51 12q22-q24.1histidine ammonia-lyase PDE4D 0.499 5q12 phosphodiesterase 4D, cAMP-specific FURIN 0.497 15q26.1 furin (paired basic amino acid cleaving enzyme) CPS1 0.49 2q35 carbamoyl-phosphate synthase 1, mitochondrial TESC 0.478 12q24.22 tescalcin INHA 0.465 2q35 inhibin, alpha S100P 0.461 4p16 S100 calcium binding protein P VPS37A 0.447 8p22 vacuolar protein sorting 37 homolog A (S. cerevisiae) SLC16A14 0.447 2q36.3 solute carrier family 16, member 14 PPARGC1A 0.443 4p15.1 peroxisome proliferator-activated receptor gamma, coactivator 1 alpha SIK1 0.435 21q22.3 salt-inducible kinase 1 IRS2 0.434 13q34 insulin receptor substrate 2 RND1 0.433 12q12 Rho family GTPase 1 HGD 0.433 3q13.33 homogentisate 1,2-dioxygenase PTP4A1 0.432 6q12 protein tyrosine phosphatase type IVA, member 1 C8orf4 0.428 8p11.2 chromosome 8 open reading frame 4 DDC 0.427 7p12.2 dopa decarboxylase (aromatic L-amino acid decarboxylase) TACC2 0.427 10q26 transforming, acidic coiled-coil containing protein 2 MUC13 0.422 3q21.2 mucin 13, cell surface associated C5 0.412 9q33-q34 complement component 5 NR4A2 0.412 2q22-q23 nuclear receptor subfamily 4, group A, member 2 EYS 0.411 6q12 eyes shut homolog (Drosophila) GPX2 0.406 14q24.1 glutathione peroxidase -
Abstracts from the 50Th European Society of Human Genetics Conference: Electronic Posters
European Journal of Human Genetics (2019) 26:820–1023 https://doi.org/10.1038/s41431-018-0248-6 ABSTRACT Abstracts from the 50th European Society of Human Genetics Conference: Electronic Posters Copenhagen, Denmark, May 27–30, 2017 Published online: 1 October 2018 © European Society of Human Genetics 2018 The ESHG 2017 marks the 50th Anniversary of the first ESHG Conference which took place in Copenhagen in 1967. Additional information about the event may be found on the conference website: https://2017.eshg.org/ Sponsorship: Publication of this supplement is sponsored by the European Society of Human Genetics. All authors were asked to address any potential bias in their abstract and to declare any competing financial interests. These disclosures are listed at the end of each abstract. Contributions of up to EUR 10 000 (ten thousand euros, or equivalent value in kind) per year per company are considered "modest". Contributions above EUR 10 000 per year are considered "significant". 1234567890();,: 1234567890();,: E-P01 Reproductive Genetics/Prenatal and fetal echocardiography. The molecular karyotyping Genetics revealed a gain in 8p11.22-p23.1 region with a size of 27.2 Mb containing 122 OMIM gene and a loss in 8p23.1- E-P01.02 p23.3 region with a size of 6.8 Mb containing 15 OMIM Prenatal diagnosis in a case of 8p inverted gene. The findings were correlated with 8p inverted dupli- duplication deletion syndrome cation deletion syndrome. Conclusion: Our study empha- sizes the importance of using additional molecular O¨. Kırbıyık, K. M. Erdog˘an, O¨.O¨zer Kaya, B. O¨zyılmaz, cytogenetic methods in clinical follow-up of complex Y. -
Bioinformatics Analysis Reveals Genes Involved in the Pathogenesis of Ameloblastoma and Keratocystic Odontogenic Tumor
IJMCM Original Article Autumn 2016, Vol 5, No 4 Bioinformatics Analysis Reveals Genes Involved in the Pathogenesis of Ameloblastoma and Keratocystic Odontogenic Tumor Eliane Macedo Sobrinho Santos1,2, Hércules Otacílio Santos3, Ivoneth dos Santos Dias4, Sérgio Henrique Santos5, Alfredo Maurício Batista de Paula1, John David Feltenberger6, André Luiz Sena Guimarães1, Lucyana Conceição Farias¹ 1. Department of Dentistry, Universidade Estadual de Montes Claros, Minas Gerais, Brazil. 2. Instituto Federal do Norte de Minas Gerais-Campus Araçuaí, Minas Gerais, Brazil. 3. Instituto Federal do Norte de Minas Gerais-Campus Salinas, Minas Gerais, Brazil. 4. Department of Biology, Universidade Estadual de Montes Claros, Minas Gerais, Brazil. 5. Department of Pharmacology, Universidade Federal de Minas Gerais, Brazil. 6. Texas Tech University Health Science Center, Lubbock, TX, USA. Submmited 10 August 2016; Accepted 10 October 2016; Published 6 Decemmber 2016 Pathogenesis of odontogenic tumors is not well known. It is important to identify genetic deregulations and molecular alterations. This study aimed to investigate, through bioinformatic analysis, the possible genes involved in the pathogenesis of ameloblastoma (AM) and keratocystic odontogenic tumor (KCOT). Genes involved in the pathogenesis of AM and KCOT were identified in GeneCards. Gene list was expanded, and the gene interactions network was mapped using the STRING software. “Weighted number of links” (WNL) was calculated to identify “leader genes” (highest WNL). Genes were ranked by K-means method and Kruskal- Wallis test was used (P<0.001). Total interactions score (TIS) was also calculated using all interaction data generated by the STRING database, in order to achieve global connectivity for each gene. The topological and ontological analyses were performed using Cytoscape software and BinGO plugin.