University of Southern Queensland – Bsc. (Hons) Thesis Jed Calvert U1098952 Supervisor
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Comparative Analysis of Secretomes from Ectomycorrhizal Fungi with an Emphasis on Small-Secreted Proteins Clément Pellegrin, Emmanuelle Morin, Francis M
Comparative Analysis of Secretomes from Ectomycorrhizal Fungi with an Emphasis on Small-Secreted Proteins Clément Pellegrin, Emmanuelle Morin, Francis M. Martin, Claire Veneault-Fourrey To cite this version: Clément Pellegrin, Emmanuelle Morin, Francis M. Martin, Claire Veneault-Fourrey. Comparative Analysis of Secretomes from Ectomycorrhizal Fungi with an Emphasis on Small-Secreted Proteins. Frontiers in Microbiology, Frontiers Media, 2015, 6, pp.1-15. 10.3389/fmicb.2015.01278. hal- 01269483 HAL Id: hal-01269483 https://hal.archives-ouvertes.fr/hal-01269483 Submitted on 27 May 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution| 4.0 International License ORIGINAL RESEARCH published: 18 November 2015 doi: 10.3389/fmicb.2015.01278 Comparative Analysis of Secretomes from Ectomycorrhizal Fungi with an Emphasis on Small-Secreted Proteins Clement Pellegrin 1, 2, Emmanuelle Morin 2, Francis M. Martin 2 and Claire Veneault-Fourrey 1, 2* 1 UMR 1136 Interactions Arbres/Microorganismes, Université de Lorraine, Vandoeuvre-lès-Nancy, France, 2 UMR 1136 Interactions Arbres/Microorganismes, Laboratoire d’Excellence ARBRE, Institut National de la Recherche Agronomique, INRA-Nancy, Champenoux, France Fungi are major players in the carbon cycle in forest ecosystems due to the wide range of interactions they have with plants either through soil degradation processes by litter decayers or biotrophic interactions with pathogenic and ectomycorrhizal symbionts. -
Phylogenetic Relationships of Rhizoctonia Fungi Within the Cantharellales
fungal biology 120 (2016) 603e619 journal homepage: www.elsevier.com/locate/funbio Phylogenetic relationships of Rhizoctonia fungi within the Cantharellales Dolores GONZALEZa,*, Marianela RODRIGUEZ-CARRESb, Teun BOEKHOUTc, Joost STALPERSc, Eiko E. KURAMAEd, Andreia K. NAKATANIe, Rytas VILGALYSf, Marc A. CUBETAb aInstituto de Ecologıa, A.C., Red de Biodiversidad y Sistematica, Carretera Antigua a Coatepec No. 351, El Haya, 91070 Xalapa, Veracruz, Mexico bDepartment of Plant Pathology, North Carolina State University, Center for Integrated Fungal Research, Campus Box 7251, Raleigh, NC 27695, USA cCBS Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands dDepartment of Microbial Ecology, Netherlands Institute of Ecology (NIOO/KNAW), Droevendaalsesteeg 10, 6708 PB Wageningen, The Netherlands eUNESP, Faculdade de Ci^encias Agronomicas,^ CP 237, 18603-970 Botucatu, SP, Brazil fDepartment of Biology, Duke University, Durham, NC 27708, USA article info abstract Article history: Phylogenetic relationships of Rhizoctonia fungi within the order Cantharellales were studied Received 2 January 2015 using sequence data from portions of the ribosomal DNA cluster regions ITS-LSU, rpb2, tef1, Received in revised form and atp6 for 50 taxa, and public sequence data from the rpb2 locus for 165 taxa. Data sets 1 January 2016 were analysed individually and combined using Maximum Parsimony, Maximum Likeli- Accepted 19 January 2016 hood, and Bayesian Phylogenetic Inference methods. All analyses supported the mono- Available online 29 January 2016 phyly of the family Ceratobasidiaceae, which comprises the genera Ceratobasidium and Corresponding Editor: Thanatephorus. Multi-locus analysis revealed 10 well-supported monophyletic groups that Joseph W. Spatafora were consistent with previous separation into anastomosis groups based on hyphal fusion criteria. -
UNIVERSIDAD MICHOACANA DE SAN NICOLÁS DE HIDALGO LATENCIA SECUNDARIA Y VIABILIDAD DE SEMILLAS DE Laelia Speciosa (H. B. K.)
UNIVERSIDAD MICHOACANA DE SAN NICOLÁS DE HIDALGO INSTITUTO DE INVESTIGACIONES AGROPECUARIAS Y FORESTALES PROGRAMA INSTITUCIONAL DE MAESTRÍA EN CIENCIAS BIOLÓGICAS LATENCIA SECUNDARIA Y VIABILIDAD DE SEMILLAS DE Laelia speciosa (H. B. K.) SCHLT. (ORCHIDACEAE) DURANTE SU CONSERVACIÓN PROYECTO DE TESIS que presenta BIÓL. ERANDENI DURÁN MENDOZA REQUISITO PARA OBTENER EL GRADO DE MAESTRA EN CIENCIAS BIOLÓGICAS Director de tesis: Dr. Alejandro Martínez Palacios Morelia Michoacán, marzo de 2017 ESTE TRABAJO FUE REALIZADO EN EL LABORATORIO DE BIOTECNOLOGÍA Y GÉNETCA DEL INSTITUTO DE INVESTIGACIONES AGROPECUARIAS Y FORESTALES (UNIDAD SAN JUANITO ITZICUARO), BAJO LA DIRECCIÓN DEL DR. ALEJANDRO MARTÍNEZ PALACIOS. DEDICATORIA A mis padres por darme la oportunidad, el apoyo y la confianza por tenerlos conmigo que son dos seres maravillosos que los amo con todo mi corazón. A Dios por enseñarme que no hay imposibles que siempre hay que tener la mirada en el presente. 1 AGRADECIMIENTOS Este trabajo fue realizado gracias a: En primer lugar, manifiesto mi gratitud al Dr. Alejandro Martínez Palacios, director de este trabajo, por su apoyo, tiempo de dedicación a este trabajo, paciencia y por cada una de sus enseñanzas que me han servido mucho. Mi gratitud y afecto a los profesores sinodales: Dra. Martha Pedraza Santos, Dra. Susana Guillen Rodríguez, Dr. Martín Mata Rosas y al Dr. Philippe Lobit, por el tiempo dedicado a las aportaciones enriqueciendo este trabajo, por estar en cada uno de los tutoriales, aunque estuvieran lejos siempre estuvieron al pendiente. A la Universidad Michoacana de San Nicolás de Hidalgo en especial al Instituto de investigación Agropecuarias y Forestales y al Programa Institucional en Ciencias Biológicas por haberme aceptado en el posgrado y por las instalaciones para la realización de este trabajo. -
Fungal Planet Description Sheets: 716–784 By: P.W
Fungal Planet description sheets: 716–784 By: P.W. Crous, M.J. Wingfield, T.I. Burgess, G.E.St.J. Hardy, J. Gené, J. Guarro, I.G. Baseia, D. García, L.F.P. Gusmão, C.M. Souza-Motta, R. Thangavel, S. Adamčík, A. Barili, C.W. Barnes, J.D.P. Bezerra, J.J. Bordallo, J.F. Cano-Lira, R.J.V. de Oliveira, E. Ercole, V. Hubka, I. Iturrieta-González, A. Kubátová, M.P. Martín, P.-A. Moreau, A. Morte, M.E. Ordoñez, A. Rodríguez, A.M. Stchigel, A. Vizzini, J. Abdollahzadeh, V.P. Abreu, K. Adamčíková, G.M.R. Albuquerque, A.V. Alexandrova, E. Álvarez Duarte, C. Armstrong-Cho, S. Banniza, R.N. Barbosa, J.-M. Bellanger, J.L. Bezerra, T.S. Cabral, M. Caboň, E. Caicedo, T. Cantillo, A.J. Carnegie, L.T. Carmo, R.F. Castañeda-Ruiz, C.R. Clement, A. Čmoková, L.B. Conceição, R.H.S.F. Cruz, U. Damm, B.D.B. da Silva, G.A. da Silva, R.M.F. da Silva, A.L.C.M. de A. Santiago, L.F. de Oliveira, C.A.F. de Souza, F. Déniel, B. Dima, G. Dong, J. Edwards, C.R. Félix, J. Fournier, T.B. Gibertoni, K. Hosaka, T. Iturriaga, M. Jadan, J.-L. Jany, Ž. Jurjević, M. Kolařík, I. Kušan, M.F. Landell, T.R. Leite Cordeiro, D.X. Lima, M. Loizides, S. Luo, A.R. Machado, H. Madrid, O.M.C. Magalhães, P. Marinho, N. Matočec, A. Mešić, A.N. Miller, O.V. Morozova, R.P. Neves, K. Nonaka, A. Nováková, N.H. -
Review of Selected Literature and Epiphyte Classification
--------- -- ---------· 4 CHAPTER 1 REVIEW OF SELECTED LITERATURE AND EPIPHYTE CLASSIFICATION 1.1 Review of Selected, Relevant Literature (p. 5) Several important aspects of epiphyte biology and ecology that are not investigated as part of this work, are reviewed, particularly those published on more. recently. 1.2 Epiphyte Classification and Terminology (p.11) is reviewed and the system used here is outlined and defined. A glossary of terms, as used here, is given. 5 1.1 Review of Selected, Relevant Li.terature Since the main works of Schimper were published (1884, 1888, 1898), particularly Die Epiphytische Vegetation Amerikas (1888), many workers have written on many aspects of epiphyte biology and ecology. Most of these will not be reviewed here because they are not directly relevant to the present study or have been effectively reviewed by others. A few papers that are keys to the earlier literature will be mentioned but most of the review will deal with topics that have not been reviewed separately within the chapters of this project where relevant (i.e. epiphyte classification and terminology, aspects of epiphyte synecology and CAM in the epiphyt~s). Reviewed here are some special problems of epiphytes, particularly water and mineral availability, uptake and cycling, general nutritional strategies and matters related to these. Also, all Australian works of any substance on vascular epiphytes are briefly discussed. some key earlier papers include that of Pessin (1925), an autecology of an epiphytic fern, which investigated a number of factors specifically related to epiphytism; he also reviewed more than 20 papers written from the early 1880 1 s onwards. -
Kingdom Class Family Scientific Name Common Name I Q a Records
Kingdom Class Family Scientific Name Common Name I Q A Records plants monocots Poaceae Paspalidium rarum C 2/2 plants monocots Poaceae Aristida latifolia feathertop wiregrass C 3/3 plants monocots Poaceae Aristida lazaridis C 1/1 plants monocots Poaceae Astrebla pectinata barley mitchell grass C 1/1 plants monocots Poaceae Cenchrus setigerus Y 1/1 plants monocots Poaceae Echinochloa colona awnless barnyard grass Y 2/2 plants monocots Poaceae Aristida polyclados C 1/1 plants monocots Poaceae Cymbopogon ambiguus lemon grass C 1/1 plants monocots Poaceae Digitaria ctenantha C 1/1 plants monocots Poaceae Enteropogon ramosus C 1/1 plants monocots Poaceae Enneapogon avenaceus C 1/1 plants monocots Poaceae Eragrostis tenellula delicate lovegrass C 2/2 plants monocots Poaceae Urochloa praetervisa C 1/1 plants monocots Poaceae Heteropogon contortus black speargrass C 1/1 plants monocots Poaceae Iseilema membranaceum small flinders grass C 1/1 plants monocots Poaceae Bothriochloa ewartiana desert bluegrass C 2/2 plants monocots Poaceae Brachyachne convergens common native couch C 2/2 plants monocots Poaceae Enneapogon lindleyanus C 3/3 plants monocots Poaceae Enneapogon polyphyllus leafy nineawn C 1/1 plants monocots Poaceae Sporobolus actinocladus katoora grass C 1/1 plants monocots Poaceae Cenchrus pennisetiformis Y 1/1 plants monocots Poaceae Sporobolus australasicus C 1/1 plants monocots Poaceae Eriachne pulchella subsp. dominii C 1/1 plants monocots Poaceae Dichanthium sericeum subsp. humilius C 1/1 plants monocots Poaceae Digitaria divaricatissima var. divaricatissima C 1/1 plants monocots Poaceae Eriachne mucronata forma (Alpha C.E.Hubbard 7882) C 1/1 plants monocots Poaceae Sehima nervosum C 1/1 plants monocots Poaceae Eulalia aurea silky browntop C 2/2 plants monocots Poaceae Chloris virgata feathertop rhodes grass Y 1/1 CODES I - Y indicates that the taxon is introduced to Queensland and has naturalised. -
Volatile Constituents of Endophytic Fungi Isolated from Aquilaria Sinensis with Descriptions of Two New Species of Nemania
life Article Volatile Constituents of Endophytic Fungi Isolated from Aquilaria sinensis with Descriptions of Two New Species of Nemania Saowaluck Tibpromma 1,2,3,†, Lu Zhang 4,†, Samantha C. Karunarathna 1,2,3, Tian-Ye Du 1,2,3, Chayanard Phukhamsakda 5,6 , Munikishore Rachakunta 7 , Nakarin Suwannarach 8,9 , Jianchu Xu 1,2,3,*, Peter E. Mortimer 1,2,3,* and Yue-Hu Wang 4,* 1 CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China; [email protected] (S.T.); [email protected] (S.C.K.); [email protected] (T.-Y.D.) 2 World Agroforestry Centre, East and Central Asia, Kunming 650201, China 3 Centre for Mountain Futures, Kunming Institute of Botany, Kunming 650201, China 4 Yunnan Key Laboratory for Fungal Diversity and Green Development, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China; [email protected] 5 Institute of Plant Protection, College of Agriculture, Jilin Agricultural University, Changchun 130118, China; [email protected] 6 Engineering Research Center of Chinese Ministry of Education for Edible and Medicinal Fungi, Jilin Agricultural University, Changchun 130118, China 7 State Key Laboratory of Phytochemistry and Plant Resources in West China, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, China; [email protected] Citation: Tibpromma, S.; Zhang, L.; 8 Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand; Karunarathna, S.C.; Du, T.-Y.; [email protected] Phukhamsakda, C.; Rachakunta, M.; 9 Research Center of Microbial Diversity and Sustainable Utilization, Faculty of Science, Chiang Mai University, Suwannarach, N.; Xu, J.; Mortimer, Chiang Mai 50200, Thailand P.E.; Wang, Y.-H. -
Black Fungal Extremes
Studies in Mycology 61 (2008) Black fungal extremes Edited by G.S. de Hoog and M. Grube CBS Fungal Biodiversity Centre, Utrecht, The Netherlands An institute of the Royal Netherlands Academy of Arts and Sciences Black fungal extremes STUDIE S IN MYCOLOGY 61, 2008 Studies in Mycology The Studies in Mycology is an international journal which publishes systematic monographs of filamentous fungi and yeasts, and in rare occasions the proceedings of special meetings related to all fields of mycology, biotechnology, ecology, molecular biology, pathology and systematics. For instructions for authors see www.cbs.knaw.nl. EXECUTIVE EDITOR Prof. dr Robert A. Samson, CBS Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands. E-mail: [email protected] LAYOUT EDITOR S Manon van den Hoeven-Verweij, CBS Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands. E-mail: [email protected] Kasper Luijsterburg, CBS Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands. E-mail: [email protected] SCIENTIFIC EDITOR S Prof. dr Uwe Braun, Martin-Luther-Universität, Institut für Geobotanik und Botanischer Garten, Herbarium, Neuwerk 21, D-06099 Halle, Germany. E-mail: [email protected] Prof. dr Pedro W. Crous, CBS Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands. E-mail: [email protected] Prof. dr David M. Geiser, Department of Plant Pathology, 121 Buckhout Laboratory, Pennsylvania State University, University Park, PA, U.S.A. 16802. E-mail: [email protected] Dr Lorelei L. Norvell, Pacific Northwest Mycology Service, 6720 NW Skyline Blvd, Portland, OR, U.S.A. -
Brisbane Native Plants by Suburb
INDEX - BRISBANE SUBURBS SPECIES LIST Acacia Ridge. ...........15 Chelmer ...................14 Hamilton. .................10 Mayne. .................25 Pullenvale............... 22 Toowong ....................46 Albion .......................25 Chermside West .11 Hawthorne................. 7 McDowall. ..............6 Torwood .....................47 Alderley ....................45 Clayfield ..................14 Heathwood.... 34. Meeandah.............. 2 Queensport ............32 Trinder Park ...............32 Algester.................... 15 Coopers Plains........32 Hemmant. .................32 Merthyr .................7 Annerley ...................32 Coorparoo ................3 Hendra. .................10 Middle Park .........19 Rainworth. ..............47 Underwood. ................41 Anstead ....................17 Corinda. ..................14 Herston ....................5 Milton ...................46 Ransome. ................32 Upper Brookfield .......23 Archerfield ...............32 Highgate Hill. ........43 Mitchelton ...........45 Red Hill.................... 43 Upper Mt gravatt. .......15 Ascot. .......................36 Darra .......................33 Hill End ..................45 Moggill. .................20 Richlands ................34 Ashgrove. ................26 Deagon ....................2 Holland Park........... 3 Moorooka. ............32 River Hills................ 19 Virginia ........................31 Aspley ......................31 Doboy ......................2 Morningside. .........3 Robertson ................42 Auchenflower -
Southern Gulf, Queensland
Biodiversity Summary for NRM Regions Species List What is the summary for and where does it come from? This list has been produced by the Department of Sustainability, Environment, Water, Population and Communities (SEWPC) for the Natural Resource Management Spatial Information System. The list was produced using the AustralianAustralian Natural Natural Heritage Heritage Assessment Assessment Tool Tool (ANHAT), which analyses data from a range of plant and animal surveys and collections from across Australia to automatically generate a report for each NRM region. Data sources (Appendix 2) include national and state herbaria, museums, state governments, CSIRO, Birds Australia and a range of surveys conducted by or for DEWHA. For each family of plant and animal covered by ANHAT (Appendix 1), this document gives the number of species in the country and how many of them are found in the region. It also identifies species listed as Vulnerable, Critically Endangered, Endangered or Conservation Dependent under the EPBC Act. A biodiversity summary for this region is also available. For more information please see: www.environment.gov.au/heritage/anhat/index.html Limitations • ANHAT currently contains information on the distribution of over 30,000 Australian taxa. This includes all mammals, birds, reptiles, frogs and fish, 137 families of vascular plants (over 15,000 species) and a range of invertebrate groups. Groups notnot yet yet covered covered in inANHAT ANHAT are notnot included included in in the the list. list. • The data used come from authoritative sources, but they are not perfect. All species names have been confirmed as valid species names, but it is not possible to confirm all species locations. -
Rare Or Threatened Vascular Plant Species of Wollemi National Park, Central Eastern New South Wales
Rare or threatened vascular plant species of Wollemi National Park, central eastern New South Wales. Stephen A.J. Bell Eastcoast Flora Survey PO Box 216 Kotara Fair, NSW 2289, AUSTRALIA Abstract: Wollemi National Park (c. 32o 20’– 33o 30’S, 150o– 151oE), approximately 100 km north-west of Sydney, conserves over 500 000 ha of the Triassic sandstone environments of the Central Coast and Tablelands of New South Wales, and occupies approximately 25% of the Sydney Basin biogeographical region. 94 taxa of conservation signiicance have been recorded and Wollemi is recognised as an important reservoir of rare and uncommon plant taxa, conserving more than 20% of all listed threatened species for the Central Coast, Central Tablelands and Central Western Slopes botanical divisions. For a land area occupying only 0.05% of these divisions, Wollemi is of paramount importance in regional conservation. Surveys within Wollemi National Park over the last decade have recorded several new populations of signiicant vascular plant species, including some sizeable range extensions. This paper summarises the current status of all rare or threatened taxa, describes habitat and associated species for many of these and proposes IUCN (2001) codes for all, as well as suggesting revisions to current conservation risk codes for some species. For Wollemi National Park 37 species are currently listed as Endangered (15 species) or Vulnerable (22 species) under the New South Wales Threatened Species Conservation Act 1995. An additional 50 species are currently listed as nationally rare under the Briggs and Leigh (1996) classiication, or have been suggested as such by various workers. Seven species are awaiting further taxonomic investigation, including Eucalyptus sp. -
<I>Abieticola Koreana</I>
MYCOTAXON ISSN (print) 0093-4666 (online) 2154-8889 © 2016. Mycotaxon, Ltd. October–December 2016—Volume 131, pp. 749–764 http://dx.doi.org/10.5248/131.749 Abieticola koreana gen. et sp. nov., a griseofulvin-producing endophytic xylariaceous ascomycete from Korea Hyang Burm Lee1*, Hye Yeon Mun1,2, Thi Thuong Thuong Nguyen1, Jin-Cheol Kim1 & Jeffrey K. Stone3 1College of Agriculture & Life Sciences, Chonnam National University, Gwangju 61186, Republic of Korea 2Fungal Resources Research Division, Nakdonggang National Institute of Biological Resources, Sangju 37242, Republic of Korea 3Department of Botany & Plant Pathology, Cordley Hall 2082, Oregon State University, Corvallis, OR 97331-2902, USA *Correspondence to: [email protected] Abstract—A new genus and species. Abieticola koreana, is described. This xylariaceous fungus was isolated from the inner bark of a Manchurian fir (Abies holophylla) in Korea. Phylogenetic analyses based on the sequences of four gene regions—ITS1-5.8S-ITS2, 28S, β-tubulin, and rpb2—were used to confirm this new genus and species. Key words—Ascomycota, anamorph, multigene, Xylarioideae, Xylariaceae Introduction The Xylariaceae is a large family of ascomycetes comprising approximately 85 genera and at least 1,340 species that are distributed worldwide and exhibit exceptional diversity in the tropics (Whalley 1996, Velmurugan et al. 2013, Stadler et al. 2014). It has been estimated that the Xylariaceae contains 10,000 undescribed species (Stadler 2011, Richardson et al. 2014). Recent phylogenetic studies (Tang et al. 2009, Daranagama et al. 2015) using combined ITS, LSU, rpb2, and β-tubulin sequences, suggested that Xylariaceae has two major lineages, Xylarioideae and Hypoxyloideae. To date, 11 genera of Xylariaceae have been shown to occur as endophytes of various plants (Pažoutová et al.