DE NOVO ASSEMBLY OF A CHROMOSOME-SCALE REFERENCE GENOME FOR THE NORTHERN FLICKER COLAPTES AURATUS The Texas Tech community has made this publication openly available. Please share how this access benefits you. Your story matters to us. Citation Jack P Hruska, Joseph D Manthey, De novo assembly of a chromosome-scale reference genome for the northern flicker Colaptes auratus, G3 Genes|Genomes|Genetics, Volume 11, Issue 1, January 2021, jkaa026, https://doi.org/10.1093/g3journal/jkaa026 Citable Link https://hdl.handle.net/2346/87602 Terms of Use CC BY 4.0 Title page template design credit to Harvard DASH. 2 G3, 2021, 11(1), jkaa026 DOI: 10.1093/g3journal/jkaa026 Advance Access Publication Date: 9 December 2020 Genome Report De novo assembly of a chromosome-scale reference genome for the northern flicker Colaptes auratus Downloaded from https://academic.oup.com/g3journal/article/11/1/jkaa026/6028989 by Texas Tech Univ. Libraries user on 09 August 2021 Jack P. Hruska * and Joseph D. Manthey Department of Biological Sciences, Texas Tech University, Lubbock, TX 79409-43131, USA *Corresponding author: Department of Biological Sciences, Texas Tech University, 2901 Main Street, Lubbock, TX 79409-43131, USA.
[email protected] Abstract Thenorthernflicker,Colaptes auratus, is a widely distributed North American woodpecker and a long-standing focal species for the study of ecology, behavior, phenotypic differentiation, and hybridization. We present here a highly contiguous de novo genome assembly of C. auratus, the first such assembly for the species and the first published chromosome-level assembly for woodpeckers (Picidae). The as- sembly was generated using a combination of short-read Chromium 10Â and long-read PacBio sequencing, and further scaffolded with chromatin conformation capture (Hi-C) reads.