Sponge Fauna in the Sea of Marmara
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National Monitoring Program for Biodiversity and Non-Indigenous Species in Egypt
UNITED NATIONS ENVIRONMENT PROGRAM MEDITERRANEAN ACTION PLAN REGIONAL ACTIVITY CENTRE FOR SPECIALLY PROTECTED AREAS National monitoring program for biodiversity and non-indigenous species in Egypt PROF. MOUSTAFA M. FOUDA April 2017 1 Study required and financed by: Regional Activity Centre for Specially Protected Areas Boulevard du Leader Yasser Arafat BP 337 1080 Tunis Cedex – Tunisie Responsible of the study: Mehdi Aissi, EcApMEDII Programme officer In charge of the study: Prof. Moustafa M. Fouda Mr. Mohamed Said Abdelwarith Mr. Mahmoud Fawzy Kamel Ministry of Environment, Egyptian Environmental Affairs Agency (EEAA) With the participation of: Name, qualification and original institution of all the participants in the study (field mission or participation of national institutions) 2 TABLE OF CONTENTS page Acknowledgements 4 Preamble 5 Chapter 1: Introduction 9 Chapter 2: Institutional and regulatory aspects 40 Chapter 3: Scientific Aspects 49 Chapter 4: Development of monitoring program 59 Chapter 5: Existing Monitoring Program in Egypt 91 1. Monitoring program for habitat mapping 103 2. Marine MAMMALS monitoring program 109 3. Marine Turtles Monitoring Program 115 4. Monitoring Program for Seabirds 118 5. Non-Indigenous Species Monitoring Program 123 Chapter 6: Implementation / Operational Plan 131 Selected References 133 Annexes 143 3 AKNOWLEGEMENTS We would like to thank RAC/ SPA and EU for providing financial and technical assistances to prepare this monitoring programme. The preparation of this programme was the result of several contacts and interviews with many stakeholders from Government, research institutions, NGOs and fishermen. The author would like to express thanks to all for their support. In addition; we would like to acknowledge all participants who attended the workshop and represented the following institutions: 1. -
Spicule Formation in Calcareous Sponges: Coordinated Expression
www.nature.com/scientificreports OPEN Spicule formation in calcareous sponges: Coordinated expression of biomineralization genes and Received: 17 November 2016 Accepted: 02 March 2017 spicule-type specific genes Published: 13 April 2017 Oliver Voigt1, Maja Adamska2, Marcin Adamski2, André Kittelmann1, Lukardis Wencker1 & Gert Wörheide1,3,4 The ability to form mineral structures under biological control is widespread among animals. In several species, specific proteins have been shown to be involved in biomineralization, but it is uncertain how they influence the shape of the growing biomineral and the resulting skeleton. Calcareous sponges are the only sponges that form calcitic spicules, which, based on the number of rays (actines) are distinguished in diactines, triactines and tetractines. Each actine is formed by only two cells, called sclerocytes. Little is known about biomineralization proteins in calcareous sponges, other than that specific carbonic anhydrases (CAs) have been identified, and that uncharacterized Asx-rich proteins have been isolated from calcitic spicules. By RNA-Seq and RNA in situ hybridization (ISH), we identified five additional biomineralization genes inSycon ciliatum: two bicarbonate transporters (BCTs) and three Asx-rich extracellular matrix proteins (ARPs). We show that these biomineralization genes are expressed in a coordinated pattern during spicule formation. Furthermore, two of the ARPs are spicule- type specific for triactines and tetractines (ARP1 orSciTriactinin ) or diactines (ARP2 or SciDiactinin). Our results suggest that spicule formation is controlled by defined temporal and spatial expression of spicule-type specific sets of biomineralization genes. By the process of biomineralization many animal groups produce mineral structures like skeletons, shells and teeth. Biominerals differ in shape considerably from their inorganic mineral counterparts1. -
Genomic Insight Into the Host–Endosymbiont Relationship of Endozoicomonas Montiporae CL-33T with Its Coral Host
ORIGINAL RESEARCH published: 08 March 2016 doi: 10.3389/fmicb.2016.00251 Genomic Insight into the Host–Endosymbiont Relationship of Endozoicomonas montiporae CL-33T with its Coral Host Jiun-Yan Ding 1, Jia-Ho Shiu 1, Wen-Ming Chen 2, Yin-Ru Chiang 1 and Sen-Lin Tang 1* 1 Biodiversity Research Center, Academia Sinica, Taipei, Taiwan, 2 Department of Seafood Science, Laboratory of Microbiology, National Kaohsiung Marine University, Kaohsiung, Taiwan The bacterial genus Endozoicomonas was commonly detected in healthy corals in many coral-associated bacteria studies in the past decade. Although, it is likely to be a core member of coral microbiota, little is known about its ecological roles. To decipher potential interactions between bacteria and their coral hosts, we sequenced and investigated the first culturable endozoicomonal bacterium from coral, the E. montiporae CL-33T. Its genome had potential sign of ongoing genome erosion and gene exchange with its Edited by: Rekha Seshadri, host. Testosterone degradation and type III secretion system are commonly present in Department of Energy Joint Genome Endozoicomonas and may have roles to recognize and deliver effectors to their hosts. Institute, USA Moreover, genes of eukaryotic ephrin ligand B2 are present in its genome; presumably, Reviewed by: this bacterium could move into coral cells via endocytosis after binding to coral’s Eph Kathleen M. Morrow, University of New Hampshire, USA receptors. In addition, 7,8-dihydro-8-oxoguanine triphosphatase and isocitrate lyase Jean-Baptiste Raina, are possible type III secretion effectors that might help coral to prevent mitochondrial University of Technology Sydney, Australia dysfunction and promote gluconeogenesis, especially under stress conditions. -
Effects of Ocean Acidification on Sponge Communities
Marine Ecology. ISSN 0173-9565 ORIGINAL ARTICLE Effects of ocean acidification on sponge communities Claire Goodwin1, Riccardo Rodolfo-Metalpa2, Bernard Picton1 & Jason M. Hall-Spencer2 1 National Museums Northern Ireland, Holywood, County Down, UK 2 Marine Biology and Ecology Research Centre, Plymouth University, Plymouth, UK Keywords Abstract CO2 vents; Mediterranean; ocean acidification; Porifera; sponge; volcanic vents. The effects of ocean acidification on lower invertebrates such as sponges may be pronounced because of their low capacity for acid–base regulation. However, so Correspondence far, most studies have focused on calcifiers. We present the first study of the Claire Goodwin, National Museums Northern effects of ocean acidification on the Porifera. Sponge species composition and Ireland, 153 Bangor Road, Cultra, Holywood, cover along pH gradients at CO2 vents off Ischia (Tyrrhenian Sea, Italy) was County Down BT20 5QZ, UK. measured at sites with normal pH (8.1–8.2), lowered pH (mean 7.8–7.9, min E-mail: [email protected] 7.4–7.5) and extremely low pH (6.6). There was a strong correlation between pH Accepted: 4 July 2013 and both sponge cover and species composition. Crambe crambe was the only species present in any abundance in the areas with mean pH 6.6, seven species doi: 10.1111/maec.12093 were present at mean pH 7.8–7.9 and four species (Phorbas tenacior, Petrosia fici- formis, Chondrilla nucula and Hemimycale columella) were restricted to sites with normal pH. Sponge percentage cover decreased significantly from normal to acidified sites. No significant effect of increasing CO2 levels and decreasing pH was found on spicule form in Crambe crambe. -
Taxonomy and Diversity of the Sponge Fauna from Walters Shoal, a Shallow Seamount in the Western Indian Ocean Region
Taxonomy and diversity of the sponge fauna from Walters Shoal, a shallow seamount in the Western Indian Ocean region By Robyn Pauline Payne A thesis submitted in partial fulfilment of the requirements for the degree of Magister Scientiae in the Department of Biodiversity and Conservation Biology, University of the Western Cape. Supervisors: Dr Toufiek Samaai Prof. Mark J. Gibbons Dr Wayne K. Florence The financial assistance of the National Research Foundation (NRF) towards this research is hereby acknowledged. Opinions expressed and conclusions arrived at, are those of the author and are not necessarily to be attributed to the NRF. December 2015 Taxonomy and diversity of the sponge fauna from Walters Shoal, a shallow seamount in the Western Indian Ocean region Robyn Pauline Payne Keywords Indian Ocean Seamount Walters Shoal Sponges Taxonomy Systematics Diversity Biogeography ii Abstract Taxonomy and diversity of the sponge fauna from Walters Shoal, a shallow seamount in the Western Indian Ocean region R. P. Payne MSc Thesis, Department of Biodiversity and Conservation Biology, University of the Western Cape. Seamounts are poorly understood ubiquitous undersea features, with less than 4% sampled for scientific purposes globally. Consequently, the fauna associated with seamounts in the Indian Ocean remains largely unknown, with less than 300 species recorded. One such feature within this region is Walters Shoal, a shallow seamount located on the South Madagascar Ridge, which is situated approximately 400 nautical miles south of Madagascar and 600 nautical miles east of South Africa. Even though it penetrates the euphotic zone (summit is 15 m below the sea surface) and is protected by the Southern Indian Ocean Deep- Sea Fishers Association, there is a paucity of biodiversity and oceanographic data. -
E Urban Sanctuary Algae and Marine Invertebrates of Ricketts Point Marine Sanctuary
!e Urban Sanctuary Algae and Marine Invertebrates of Ricketts Point Marine Sanctuary Jessica Reeves & John Buckeridge Published by: Greypath Productions Marine Care Ricketts Point PO Box 7356, Beaumaris 3193 Copyright © 2012 Marine Care Ricketts Point !is work is copyright. Apart from any use permitted under the Copyright Act 1968, no part may be reproduced by any process without prior written permission of the publisher. Photographs remain copyright of the individual photographers listed. ISBN 978-0-9804483-5-1 Designed and typeset by Anthony Bright Edited by Alison Vaughan Printed by Hawker Brownlow Education Cheltenham, Victoria Cover photo: Rocky reef habitat at Ricketts Point Marine Sanctuary, David Reinhard Contents Introduction v Visiting the Sanctuary vii How to use this book viii Warning viii Habitat ix Depth x Distribution x Abundance xi Reference xi A note on nomenclature xii Acknowledgements xii Species descriptions 1 Algal key 116 Marine invertebrate key 116 Glossary 118 Further reading 120 Index 122 iii Figure 1: Ricketts Point Marine Sanctuary. !e intertidal zone rocky shore platform dominated by the brown alga Hormosira banksii. Photograph: John Buckeridge. iv Introduction Most Australians live near the sea – it is part of our national psyche. We exercise in it, explore it, relax by it, "sh in it – some even paint it – but most of us simply enjoy its changing modes and its fascinating beauty. Ricketts Point Marine Sanctuary comprises 115 hectares of protected marine environment, located o# Beaumaris in Melbourne’s southeast ("gs 1–2). !e sanctuary includes the coastal waters from Table Rock Point to Quiet Corner, from the high tide mark to approximately 400 metres o#shore. -
Review of the Mineralogy of Calcifying Sponges
Dickinson College Dickinson Scholar Faculty and Staff Publications By Year Faculty and Staff Publications 12-2013 Not All Sponges Will Thrive in a High-CO2 Ocean: Review of the Mineralogy of Calcifying Sponges Abigail M. Smith Jade Berman Marcus M. Key, Jr. Dickinson College David J. Winter Follow this and additional works at: https://scholar.dickinson.edu/faculty_publications Part of the Paleontology Commons Recommended Citation Smith, Abigail M.; Berman, Jade; Key,, Marcus M. Jr.; and Winter, David J., "Not All Sponges Will Thrive in a High-CO2 Ocean: Review of the Mineralogy of Calcifying Sponges" (2013). Dickinson College Faculty Publications. Paper 338. https://scholar.dickinson.edu/faculty_publications/338 This article is brought to you for free and open access by Dickinson Scholar. It has been accepted for inclusion by an authorized administrator. For more information, please contact [email protected]. © 2013. Licensed under the Creative Commons http://creativecommons.org/licenses/by- nc-nd/4.0/ Elsevier Editorial System(tm) for Palaeogeography, Palaeoclimatology, Palaeoecology Manuscript Draft Manuscript Number: PALAEO7348R1 Title: Not all sponges will thrive in a high-CO2 ocean: Review of the mineralogy of calcifying sponges Article Type: Research Paper Keywords: sponges; Porifera; ocean acidification; calcite; aragonite; skeletal biomineralogy Corresponding Author: Dr. Abigail M Smith, PhD Corresponding Author's Institution: University of Otago First Author: Abigail M Smith, PhD Order of Authors: Abigail M Smith, PhD; Jade Berman, PhD; Marcus M Key Jr, PhD; David J Winter, PhD Abstract: Most marine sponges precipitate silicate skeletal elements, and it has been predicted that they would be among the few "winners" in an acidifying, high-CO2 ocean. -
Belgian Register of Marine Species
BELGIAN REGISTER OF MARINE SPECIES September 2010 Belgian Register of Marine Species – September 2010 BELGIAN REGISTER OF MARINE SPECIES, COMPILED AND VALIDATED BY THE VLIZ BELGIAN MARINE SPECIES CONSORTIUM VLIZ SPECIAL PUBLICATION 46 SUGGESTED CITATION Leen Vandepitte, Wim Decock & Jan Mees (eds) (2010). Belgian Register of Marine Species, compiled and validated by the VLIZ Belgian Marine Species Consortium. VLIZ Special Publication, 46. Vlaams Instituut voor de Zee (VLIZ): Oostende, Belgium. 78 pp. ISBN 978‐90‐812900‐8‐1. CONTACT INFORMATION Flanders Marine Institute – VLIZ InnovOcean site Wandelaarkaai 7 8400 Oostende Belgium Phone: ++32‐(0)59‐34 21 30 Fax: ++32‐(0)59‐34 21 31 E‐mail: [email protected] or [email protected] ‐ 2 ‐ Belgian Register of Marine Species – September 2010 Content Introduction ......................................................................................................................................... ‐ 5 ‐ Used terminology and definitions ....................................................................................................... ‐ 7 ‐ Belgian Register of Marine Species in numbers .................................................................................. ‐ 9 ‐ Belgian Register of Marine Species ................................................................................................... ‐ 12 ‐ BACTERIA ............................................................................................................................................. ‐ 12 ‐ PROTOZOA ........................................................................................................................................... -
Porifera) in Singapore and Description of a New Species of Forcepia (Poecilosclerida: Coelosphaeridae)
Contributions to Zoology, 81 (1) 55-71 (2012) Biodiversity of shallow-water sponges (Porifera) in Singapore and description of a new species of Forcepia (Poecilosclerida: Coelosphaeridae) Swee-Cheng Lim1, 3, Nicole J. de Voogd2, Koh-Siang Tan1 1 Tropical Marine Science Institute, National University of Singapore, 18 Kent Ridge Road, Singapore 119227, Singapore 2 Netherlands Centre for Biodiversity, Naturalis, PO Box 9517, 2300 RA Leiden, The Netherlands 3 E-mail: [email protected] Key words: intertidal, Southeast Asia, sponge assemblage, subtidal, tropical Abstract gia) patera (Hardwicke, 1822) was the first sponge de- scribed from Singapore in the 19th century. This was A surprisingly high number of shallow water sponge species followed by Leucosolenia flexilis (Haeckel, 1872), (197) were recorded from extensive sampling of natural inter- Coelocarteria singaporensis (Carter, 1883) (as Phloeo tidal and subtidal habitats in Singapore (Southeast Asia) from May 2003 to June 2010. This is in spite of a highly modified dictyon), and Callyspongia (Cladochalina) diffusa coastline that encompasses one of the world’s largest container Ridley (1884). Subsequently, Dragnewitsch (1906) re- ports as well as extensive oil refining and bunkering industries. corded 24 sponge species from Tanjong Pagar and Pu- A total of 99 intertidal species was recorded in this study. Of lau Brani in the Singapore Strait. A further six species these, 53 species were recorded exclusively from the intertidal of sponge were reported from Singapore in the 1900s, zone and only 45 species were found on both intertidal and subtidal habitats, suggesting that tropical intertidal and subtidal although two species, namely Cinachyrella globulosa sponge assemblages are different and distinct. -
General Introduction and Objectives 3
General introduction and objectives 3 General introduction: General body organization: The phylum Porifera is commonly referred to as sponges. The phylum, that comprises more than 6,000 species, is divided into three classes: Calcarea, Hexactinellida and Demospongiae. The latter class contains more than 85% of the living species. They are predominantly marine, with the notable exception of the family Spongillidae, an extant group of freshwater demosponges whose fossil record begins in the Cretaceous. Sponges are ubiquitous benthic creatures, found at all latitudes beneath the world's oceans, and from the intertidal to the deep-sea. Sponges are considered as the most basal phylum of metazoans, since most of their features appear to be primitive, and it is widely accepted that multicellular animals consist of a monophyletic group (Zrzavy et al. 1998). Poriferans appear to be diploblastic (Leys 2004; Maldonado 2004), although the two cellular sheets are difficult to homologise with those of the rest of metazoans. They are sessile animals, though it has been shown that some are able to move slowly (up to 4 mm per day) within aquaria (e.g., Bond and Harris 1988; Maldonado and Uriz 1999). They lack organs, possessing cells that develop great number of functions. The sponge body is lined by a pseudoepithelial layer of flat cells (exopinacocytes). Anatomically and physiologically, tissues of most sponges (but carnivorous sponges) are organized around an aquiferous system of excurrent and incurrent canals (Rupert and Barnes 1995). These canals are lined by a pseudoepithelial layer of flat cells (endopinacocytes).Water flows into the sponge body through multiple apertures (ostia) General introduction and objectives 4 to the incurrent canals which end in the choanocyte chambers (Fig. -
Dictyoceratida, Demospongiae): Comparison of Two Populations Living Under Contrasted Environmental Conditions
Sexual Reproduction of Hippospongia communis (Lamarck, 1814) (Dictyoceratida, Demospongiae): comparison of two populations living under contrasted environmental conditions. Zarrouk Souad, Alexander Ereskovsky, Karim Mustapha, Amor Abed, Thierry Perez To cite this version: Zarrouk Souad, Alexander Ereskovsky, Karim Mustapha, Amor Abed, Thierry Perez. Sexual Repro- duction of Hippospongia communis (Lamarck, 1814) (Dictyoceratida, Demospongiae): comparison of two populations living under contrasted environmental conditions. Marine Ecology, Wiley, 2013, 34, pp.432-442. 10.1111/maec.12043. hal-01456660 HAL Id: hal-01456660 https://hal.archives-ouvertes.fr/hal-01456660 Submitted on 13 Apr 2018 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Marine Ecology. ISSN 0173-9565 ORIGINAL ARTICLE Sexual reproduction of Hippospongia communis (Lamarck, 1814) (Dictyoceratida, Demospongiae): comparison of two populations living under contrasting environmental conditions Souad Zarrouk1,2, Alexander V. Ereskovsky3, Karim Ben Mustapha1, Amor El Abed2 & Thierry Perez 3 -
With Ornamented Exotyles
Journal of the Marine Biological Association of the United Kingdom, 2017, 97(6), 1351–1406. # Marine Biological Association of the United Kingdom, 2016. This is an Open Access article, distributed under the terms of the Creative Commons Attribution licence (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted re-use, distribution, and reproduction in any medium, provided the original work is properly cited. doi:10.1017/S0025315416000655 Polymastiidae (Demospongiae: Hadromerida) with ornamented exotyles: a review of morphological affinities and description of a new genus and three new species alexander plotkin1, christine morrow2, elena gerasimova3 and hans tore rapp1,4,5 1Department of Biology, University of Bergen, Postbox 7803, 5020 Bergen, Norway, 2Department of Zoology, Ryan Institute, National University of Ireland Galway, University Road, Galway, Ireland, 3Ra˚dgivende Biologer AS, Bredsga˚rden, Bryggen, 5003 Bergen, Norway, 4Centre for Geobiology, University of Bergen, Postbox 7803, 5020 Bergen, Norway, 5Uni Environment, Uni Research AS, Postbox 7810, 5020 Bergen, Norway All polymastiid sponges displaying ornamented exotyles are reviewed and their morphological affinities are reconsidered. The study embraces all known species of Proteleia, Sphaerotylus, Trachyteleia and Tylexocladus as well as several species of Polymastia. A new genus, Koltunia, is established for the Antarctic species Proteleia burtoni based on the unique shape of distal ornamentations of its giant exotyles and on the absence of a spicule palisade in its cortex, a rare feature among the polymastiids. Three new species of Sphaerotylus are described – S. renoufi from the British Isles, S. strobilis from South Africa and S. tjalfei from West Greenland. Transfer of one New Zealand species from Polymastia to Proteleia and of one Chilean species from Polymastia to Sphaerotylus is proposed.