Three-Stage Origin of Life As a Result of Directional Darwinian Evolution
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Biomolecules
CHAPTER 3 Biomolecules 3.1 Carbohydrates In the previous chapter you have learnt about the cell and 3.2 Fatty Acids and its organelles. Each organelle has distinct structure and Lipids therefore performs different function. For example, cell membrane is made up of lipids and proteins. Cell wall is 3.3 Amino Acids made up of carbohydrates. Chromosomes are made up of 3.4 Protein Structure protein and nucleic acid, i.e., DNA and ribosomes are made 3.5 Nucleic Acids up of protein and nucleic acids, i.e., RNA. These ingredients of cellular organelles are also called macromolecules or biomolecules. There are four major types of biomolecules— carbohydrates, proteins, lipids and nucleic acids. Apart from being structural entities of the cell, these biomolecules play important functions in cellular processes. In this chapter you will study the structure and functions of these biomolecules. 3.1 CARBOHYDRATES Carbohydrates are one of the most abundant classes of biomolecules in nature and found widely distributed in all life forms. Chemically, they are aldehyde and ketone derivatives of the polyhydric alcohols. Major role of carbohydrates in living organisms is to function as a primary source of energy. These molecules also serve as energy stores, 2021-22 Chapter 3 Carbohydrade Final 30.018.2018.indd 50 11/14/2019 10:11:16 AM 51 BIOMOLECULES metabolic intermediates, and one of the major components of bacterial and plant cell wall. Also, these are part of DNA and RNA, which you will study later in this chapter. The cell walls of bacteria and plants are made up of polymers of carbohydrates. -
AP Biology Planner
COURSE PLANNER Please note that not all activities for the course are listed, and many activities will be supplemented with additional activities such as diagram analysis, practice essays, etc. Intro to AP Biology/Scientific Method This course begins with introducing students to the seven science practices, in addition to the Big Ideas that unify the course. Students complete the lab exercises that emphasize the need for controls in experiments as well as to identify and explain potential sources of error as part of the normal scientific process. Reading in Campbell and Reece: Topics: • Intro to AP biology, the test and how to study. ♣ Activity: Theme-teams: Students research and present scientist who represent each Big Idea in AP Biology. ♣ Activity: Analyzing the AP multiple choice questions with diagrams. • Scientific Method: Steps and controlled experiments ♣ Activity: What is Science? Discussion/Poster Creation. ♣ Activity: Lab Safety activity: NIH’s Student Lab Safety Introduction Course. https://www.safetytraining.nih.gov/introcourse/labsafetyIntro.aspx ♣ Activity: Identify risks in procedures and materials (MSDS analysis) ♣ Activity: Guide to good graphing. ♣ Activity: Examining bias in science. ♣ Lab: Student Designed inquiry. The effect of environmental factors on the metabolic rate of yeast. In this student designed inquiry, students investigate environmental factors as they relate to CO2 production or O2 consumption in yeast. Students must select an independent variable and dependent variable, as well as design an experimental procedure based on an existing lab protocol. ECOLOGY The ecology unit introduces the ideas of energy processes and interactions, which are the focus of Big Idea 2 and 4. Ecology introduces students to creating, analyzing, and evaluating mathematical models in biology and prepares students to tackle evolution, the central unit in AP Biology. -
Intelligent Design, Abiogenesis, and Learning from History: Dennis R
Author Exchange Intelligent Design, Abiogenesis, and Learning from History: Dennis R. Venema A Reply to Meyer Dennis R. Venema Weizsäcker’s book The World View of Physics is still keeping me very busy. It has again brought home to me quite clearly how wrong it is to use God as a stop-gap for the incompleteness of our knowledge. If in fact the frontiers of knowledge are being pushed back (and that is bound to be the case), then God is being pushed back with them, and is therefore continually in retreat. We are to find God in what we know, not in what we don’t know; God wants us to realize his presence, not in unsolved problems but in those that are solved. Dietrich Bonhoeffer1 am thankful for this opportunity to nature, is the result of intelligence. More- reply to Stephen Meyer’s criticisms over, this assertion is proffered as the I 2 of my review of his book Signature logical basis for inferring design for the in the Cell (hereafter Signature). Meyer’s origin of biological information: if infor- critiques of my review fall into two gen- mation only ever arises from intelli- eral categories. First, he claims I mistook gence, then the mere presence of Signature for an argument against bio- information demonstrates design. A few logical evolution, rendering several of examples from Signature make the point my arguments superfluous. Secondly, easily: Meyer asserts that I have failed to refute … historical scientists can show that his thesis by not providing a “causally a presently acting cause must have adequate alternative explanation” for the been present in the past because the origin of life in that the few relevant cri- proposed candidate is the only known tiques I do provide are “deeply flawed.” cause of the effect in question. -
The Great Oxidation Event: an Expert Discussion on the Causes, the Processes, and the Still Unknowns
ASTROBIOLOGY Volume 12, Number 12, 2012 The Astrobiology Society Roundtable ª Mary Ann Liebert, Inc. DOI: 10.1089/ast.2012.1110 The Great Oxidation Event: An Expert Discussion on the Causes, the Processes, and the Still Unknowns Moderator: Frances Westall1 Participants: Ariel Anbar,2 Woody Fischer,3 and Lee Kump4 Dr. Frances Westall (FW): Let’s begin with each of you seeming to get honed in on the Archean-Proterozoic tran- giving an overview as to the importance of biogenic pro- sition, I have always looked for a change in the solid cesses in the rise of oxygen—oxygenic photosynthesis. Lee, Earth dynamics that is linked to that, because the Archean- would you like to begin? Proterozoic boundary was defined based on geological evi- Dr. Lee Kump (LK): What is really interesting about the dence for the stabilization of continental cratons. history of atmospheric oxygenation is that there is this event That is what ultimately led Mark Barley and me to look at or interval of change from an anoxic Archean atmosphere to that issue of changes in style of tectonics at the Archean- an oxygenated post-Archean atmosphere (Holland, 1994). Proterozoic boundary, and ultimately focus on the style of When we think about the causes of the rise of oxygen and we volcanism (Kump and Barley, 2007). This was, again, the think about the Great Oxidation Event, it is really a funda- result of Holland pointing out that in modern volcanic sys- mental change in the way the Earth system functioned. It is a tems, the oxygen demand from the release of fluids, gases of new state; it is the oxygenated state that is distinct from the subaerial volcanoes was significantly less than that from the anoxic state, and it is nonreversible. -
Bayesian Analysis of the Astrobiological Implications of Life's
Bayesian analysis of the astrobiological implications of life's early emergence on Earth David S. Spiegel ∗ y, Edwin L. Turner y z ∗Institute for Advanced Study, Princeton, NJ 08540,yDept. of Astrophysical Sciences, Princeton Univ., Princeton, NJ 08544, USA, and zInstitute for the Physics and Mathematics of the Universe, The Univ. of Tokyo, Kashiwa 227-8568, Japan Submitted to Proceedings of the National Academy of Sciences of the United States of America Life arose on Earth sometime in the first few hundred million years Any inferences about the probability of life arising (given after the young planet had cooled to the point that it could support the conditions present on the early Earth) must be informed water-based organisms on its surface. The early emergence of life by how long it took for the first living creatures to evolve. By on Earth has been taken as evidence that the probability of abiogen- definition, improbable events generally happen infrequently. esis is high, if starting from young-Earth-like conditions. We revisit It follows that the duration between events provides a metric this argument quantitatively in a Bayesian statistical framework. By (however imperfect) of the probability or rate of the events. constructing a simple model of the probability of abiogenesis, we calculate a Bayesian estimate of its posterior probability, given the The time-span between when Earth achieved pre-biotic condi- data that life emerged fairly early in Earth's history and that, billions tions suitable for abiogenesis plus generally habitable climatic of years later, curious creatures noted this fact and considered its conditions [5, 6, 7] and when life first arose, therefore, seems implications. -
Evolutionary Trends
Evo Edu Outreach (2008) 1:259–273 DOI 10.1007/s12052-008-0055-6 ORIGINAL SCIENTIFIC ARTICLE Evolutionary Trends T. Ryan Gregory Published online: 25 June 2008 # Springer Science + Business Media, LLC 2008 Abstract The occurrence, generality, and causes of large- a pattern alone, to extrapolate from individual cases to scale evolutionary trends—directional changes over long entire systems, and to focus on extremes rather than periods of time—have been the subject of intensive study recognizing diversity. This is especially true in the study and debate in evolutionary science. Large-scale patterns in the of historically contingent processes such as evolution, history of life have also been of considerable interest to which spans nearly four billion years and encompasses nonspecialists, although misinterpretations and misunder- the rise and disappearance of hundreds of millions, if not standings of this important issue are common and can have billions, of species and the struggles of an unimaginably significant implications for an overall understanding of large number of individual organisms. evolution. This paper provides an overview of how trends This is not to say that no patterns exist in the history of are identified, categorized, and explained in evolutionary life, only that the situation is often far more complex than is biology. Rather than reviewing any particular trend in detail, acknowledged. Notably, the most common portrayals of the intent is to provide a framework for understanding large- evolution in nonacademic settings include not just change, scale evolutionary patterns in general and to highlight the fact but directional, adaptive change—if not outright notions of that both the patterns and their underlying causes are usually “advancement”—and it is fair to say that such a view has in quite complex. -
Lecture 2 Our Place in the Universe (Cont'd)
Astronomy 110 –1 Lecture 2 Our Place in the Universe (Cont’d) 14/01/09 1 Copyright © 2009 Pearson Education, Inc. A few useful mathematical skills 14/01/09 2 Copyright © 2009 Pearson Education, Inc. Powers of ten 103 = 10 x 10 x 10 = 1000 102 = 10 x 10 = 100 101 = 10 100 = 1 10-1 = 1/10 = 0.1 10-2 = 1/10 x 1/10 = 0.01 10-3 = 1/10 x 1/10 x 1/10 = 0.001 Then: 300 = 3 x 100 = 3 x 102 2,500 = 2.5 x 1000 = 2.5 x 103 14/01/09 3 Copyright © 2009 Pearson Education, Inc. Multiplying & dividing 101 x 101 = 100 = 102 101 x 102 = 10 x 100 = 1000 = 103 102 x 102 = 100 x 100 = 10000 = 104 When multiplying two powers of ten, add the exponents 1000 ÷ 100 = 103 ÷ 102 = 10 = 101 10 ÷ 10 = 101 ÷ 101 = 1 = 100 10 ÷ 100 = 101 ÷ 102 = 1/10 = 10-1 When dividing, subtract exponent of divisor from exponent of numerator 14/01/09 4 Copyright © 2009 Pearson Education, Inc. Powers and roots (104)3 = 104 x 104 x 104 = 1012 Rule of thumb: when raising to a power, multiply exponents What about √(104)? √(104) = 102 taking roots is the same as raising to a fractional power, in this case 1/2 power: √(104) = (104)1/2 = 102 √ is the same as raising to 1/2 power 3√ is the same as raising to 1/3 power 4√ is the same as raising to 1/4 power 14/01/09 5 Copyright © 2009 Pearson Education, Inc. -
2010 Hyundai Genesis
2010 HYUNDAI_GENESIS If you’re reading this brochure, chances are you’re the kind of automotive enthusiast who, instead of simply opening your wallet and adding a status trophy to your garage, prefers to open something else: Your mind. It’s a refreshing attitude that often leads you to discover truly rewarding experiences, from new and unexpected sources. Like Genesis, from Hyundai. Nobody was looking for Hyundai to build a luxury car that would challenge the automotive elite. But we did. Nobody expected us to benchmark the industry’s best, then apply the art and science needed to meet those marks. But we did. Nobody thought we’d charm the pants off a jury of North America’s most esteemed automotive journalists, or be named "The Most Appealing Midsize Premium Car" in 2009 by J.D. Power and Associates.1 But we did. And by doing what few people expected of us, we now find ourselves as a car company that a lot of people are starting to think about in a whole new way. It’s 2010. Welcome to Hyundai. 1 The Hyundai Genesis received the highest numerical score among midsize premium cars in the proprietary J.D. Power and Associates 2009 Automotive Performance Execution and Layout Study.SM Study based on responses from 80,930 new-vehicle owners, measuring 245 models and measures opinions after 90 days of ownership. Proprietary study results are based on experiences and perceptions of owners surveyed in February-May 2009. Your experiences may vary. Visit jdpower.com. geNesIS 3.8 IN TItaNIUM GRay metallIC MEASURE GENESIS AGAINST OTHER LUXURY SEDANS. -
Sugars As the Source of Energized Carbon for Abiogenesis
Astrobiology Science Conference 2010 (2010) 5095.pdf SUGARS AS THE SOURCE OF ENERGIZED CARBON FOR ABIOGENESIS. A. L. Weber, SETI Institute, NASA Ames Research Center, Mail Stop 239-4, Moffett Field, CA, 94035-1000, [email protected] Abstract: As shown in Figure 1, abiogenesis has sev- eral requirements: (A) a source of organic substrates and chemical energy that drives the synthesis of (B) useful small molecules (ammonia, monomers, metabo- lites, energy molecules), and (C) a second synthetic processs that yields large replicating and catalytic polymers that control (D) the growth and maintenance of a primitive protocell. Furthermore, the required chemical energy must be sustained and effectively coupled to individual reactions to drive biosynthesis at a rate that counters chemical degradation. Energy coupling would have been especially difficult during the origin of life before the development of powerful enzyme catalysts with 3-D active sites. To solve this energy coupling problem we have investigated abio- genesis using sugar substrates whose energized carbon groups drive spontaneous synthetic self-transformation reactions that yield: biometabolites, catalytic mole- cules, energy-rich thioesters, amino acids, plausible alternative nucleobases and cell-like microstructures [1-8]. Recently, we demonstrated that sugars drive the synthesis of ammonia from nitrite [9]. The ability of sugars to drive ammonia synthesis provides a way to generate ammonia at microscopic sites of sugar-based origins processes, thereby eliminating the need for a planet-wide source of photochemically unstable am- monia. Figure 1. Major Synthetic Processes of Abiogenesis. [1] Weber A. L. (1998) Orig. Life Evol. Biosph., 28, 259-270. [2] Weber A. -
Evolution by Natural Selection, Formulated Independently by Charles Darwin and Alfred Russel Wallace
UNIT 4 EVOLUTIONARY PATT EVOLUTIONARY E RNS AND PROC E SS E Evolution by Natural S 22 Selection Natural selection In this chapter you will learn that explains how Evolution is one of the most populations become important ideas in modern biology well suited to their environments over time. The shape and by reviewing by asking by applying coloration of leafy sea The rise of What is the evidence for evolution? Evolution in action: dragons (a fish closely evolutionary thought two case studies related to seahorses) 22.1 22.4 are heritable traits that with regard to help them to hide from predators. The pattern of evolution: The process of species have changed evolution by natural and are related 22.2 selection 22.3 keeping in mind Common myths about natural selection and adaptation 22.5 his chapter is about one of the great ideas in science: the theory of evolution by natural selection, formulated independently by Charles Darwin and Alfred Russel Wallace. The theory explains how T populations—individuals of the same species that live in the same area at the same time—have come to be adapted to environments ranging from arctic tundra to tropical wet forest. It revealed one of the five key attributes of life: Populations of organisms evolve. In other words, the heritable characteris- This chapter is part of the tics of populations change over time (Chapter 1). Big Picture. See how on Evolution by natural selection is one of the best supported and most important theories in the history pages 516–517. of scientific research. -
Lineages, Splits and Divergence Challenge Whether the Terms Anagenesis and Cladogenesis Are Necessary
Biological Journal of the Linnean Society, 2015, , – . With 2 figures. Lineages, splits and divergence challenge whether the terms anagenesis and cladogenesis are necessary FELIX VAUX*, STEVEN A. TREWICK and MARY MORGAN-RICHARDS Ecology Group, Institute of Agriculture and Environment, Massey University, Palmerston North, New Zealand Received 3 June 2015; revised 22 July 2015; accepted for publication 22 July 2015 Using the framework of evolutionary lineages to separate the process of evolution and classification of species, we observe that ‘anagenesis’ and ‘cladogenesis’ are unnecessary terms. The terms have changed significantly in meaning over time, and current usage is inconsistent and vague across many different disciplines. The most popular definition of cladogenesis is the splitting of evolutionary lineages (cessation of gene flow), whereas anagenesis is evolutionary change between splits. Cladogenesis (and lineage-splitting) is also regularly made synonymous with speciation. This definition is misleading as lineage-splitting is prolific during evolution and because palaeontological studies provide no direct estimate of gene flow. The terms also fail to incorporate speciation without being arbitrary or relative, and the focus upon lineage-splitting ignores the importance of divergence, hybridization, extinction and informative value (i.e. what is helpful to describe as a taxon) for species classification. We conclude and demonstrate that evolution and species diversity can be considered with greater clarity using simpler, more transparent terms than anagenesis and cladogenesis. Describing evolution and taxonomic classification can be straightforward, and there is no need to ‘make words mean so many different things’. © 2015 The Linnean Society of London, Biological Journal of the Linnean Society, 2015, 00, 000–000. -
Critical Analysis of Article "21 Reasons to Believe the Earth Is Young" by Jeff Miller
1 Critical analysis of article "21 Reasons to Believe the Earth is Young" by Jeff Miller Lorence G. Collins [email protected] Ken Woglemuth [email protected] January 7, 2019 Introduction The article by Dr. Jeff Miller can be accessed at the following link: http://apologeticspress.org/APContent.aspx?category=9&article=5641 and is an article published by Apologetic Press, v. 39, n.1, 2018. The problems start with the Article In Brief in the boxed paragraph, and with the very first sentence. The Bible does not give an age of the Earth of 6,000 to 10,000 years, or even imply − this is added to Scripture by Dr. Miller and other young-Earth creationists. R. C. Sproul was one of evangelicalism's outstanding theologians, and he stated point blank at the Legionier Conference panel discussion that he does not know how old the Earth is, and the Bible does not inform us. When there has been some apparent conflict, either the theologians or the scientists are wrong, because God is the Author of the Bible and His handiwork is in general revelation. In the days of Copernicus and Galileo, the theologians were wrong. Today we do not know of anyone who believes that the Earth is the center of the universe. 2 The last sentence of this "Article In Brief" is boldly false. There is almost no credible evidence from paleontology, geology, astrophysics, or geophysics that refutes deep time. Dr. Miller states: "The age of the Earth, according to naturalists and old- Earth advocates, is 4.5 billion years.