The Antenna Reaction Center Complex of Heliobacteria: Composition, Energy Conversion and Electron Transfer1
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The Reaction Center of Green Sulfur Bacteria1
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Biochimica et Biophysica Acta 1507 (2001) 260^277 www.bba-direct.com Review The reaction center of green sulfur bacteria1 G. Hauska a;*, T. Schoedl a, Herve¨ Remigy b, G. Tsiotis c a Lehrstuhl fu«r Zellbiologie und P£anzenphysiologie, Fakulta«tfu«r Biologie und Vorklinische Medizin, Universita«t Regensburg, 93040 Regenburg, Germany b Biozentrum, M.E. Mu«ller Institute of Microscopic Structural Biology, University of Basel, CH-4056 Basel, Switzerland c Division of Biochemistry, Department of Chemistry, University of Crete, 71409 Heraklion, Greece Received 9 April 2001; received in revised form 13 June 2001; accepted 5 July 2001 Abstract The composition of the P840-reaction center complex (RC), energy and electron transfer within the RC, as well as its topographical organization and interaction with other components in the membrane of green sulfur bacteria are presented, and compared to the FeS-type reaction centers of Photosystem I and of Heliobacteria. The core of the RC is homodimeric, since pscA is the only gene found in the genome of Chlorobium tepidum which resembles the genes psaA and -B for the heterodimeric core of Photosystem I. Functionally intact RC can be isolated from several species of green sulfur bacteria. It is generally composed of five subunits, PscA^D plus the BChl a-protein FMO. Functional cores, with PscA and PscB only, can be isolated from Prostecochloris aestuarii. The PscA-dimer binds P840, a special pair of BChl a-molecules, the primary electron acceptor A0, which is a Chl a-derivative and FeS-center FX. -
Horizontal Operon Transfer, Plasmids, and the Evolution of Photosynthesis in Rhodobacteraceae
The ISME Journal (2018) 12:1994–2010 https://doi.org/10.1038/s41396-018-0150-9 ARTICLE Horizontal operon transfer, plasmids, and the evolution of photosynthesis in Rhodobacteraceae 1 2 3 4 1 Henner Brinkmann ● Markus Göker ● Michal Koblížek ● Irene Wagner-Döbler ● Jörn Petersen Received: 30 January 2018 / Revised: 23 April 2018 / Accepted: 26 April 2018 / Published online: 24 May 2018 © The Author(s) 2018. This article is published with open access Abstract The capacity for anoxygenic photosynthesis is scattered throughout the phylogeny of the Proteobacteria. Their photosynthesis genes are typically located in a so-called photosynthesis gene cluster (PGC). It is unclear (i) whether phototrophy is an ancestral trait that was frequently lost or (ii) whether it was acquired later by horizontal gene transfer. We investigated the evolution of phototrophy in 105 genome-sequenced Rhodobacteraceae and provide the first unequivocal evidence for the horizontal transfer of the PGC. The 33 concatenated core genes of the PGC formed a robust phylogenetic tree and the comparison with single-gene trees demonstrated the dominance of joint evolution. The PGC tree is, however, largely incongruent with the species tree and at least seven transfers of the PGC are required to reconcile both phylogenies. 1234567890();,: 1234567890();,: The origin of a derived branch containing the PGC of the model organism Rhodobacter capsulatus correlates with a diagnostic gene replacement of pufC by pufX. The PGC is located on plasmids in six of the analyzed genomes and its DnaA- like replication module was discovered at a conserved central position of the PGC. A scenario of plasmid-borne horizontal transfer of the PGC and its reintegration into the chromosome could explain the current distribution of phototrophy in Rhodobacteraceae. -
Carbon Flow of Heliobacteria Is Related More
Supplemental Material can be found at: http://www.jbc.org/content/suppl/2010/08/31/M110.163303.DC1.html THE JOURNAL OF BIOLOGICAL CHEMISTRY VOL. 285, NO. 45, pp. 35104–35112, November 5, 2010 © 2010 by The American Society for Biochemistry and Molecular Biology, Inc. Printed in the U.S.A. Carbon Flow of Heliobacteria Is Related More to Clostridia than to the Green Sulfur Bacteria*□S Received for publication, July 14, 2010, and in revised form, August 30, 2010 Published, JBC Papers in Press, August 31, 2010, DOI 10.1074/jbc.M110.163303 Kuo-Hsiang Tang‡§1,2, Xueyang Feng¶1, Wei-Qin Zhuangʈ, Lisa Alvarez-Cohenʈ, Robert E. Blankenship‡§, and Yinjie J. Tang¶3 From the Departments of ‡Biology, §Chemistry, and ¶Energy, Environment, and Chemical Engineering, Washington University, St. Louis, Missouri 63130 and the ʈDepartment of Civil and Environmental Engineering, University of California, Berkeley, California 94720 The recently discovered heliobacteria are the only Gram-pos- cultured heliobacteria (2), Heliobacterium modesticaldum is itive photosynthetic bacteria that have been cultured. One of the the only one that can grow at temperatures of Ͼ50 °C. Madigan unique features of heliobacteria is that they have properties of and co-workers (1, 3) reported that pyruvate, lactate, acetate both the photosynthetic green sulfur bacteria (containing the (ϩHCOϪ), or yeast extract can support the phototrophic 3 Downloaded from type I reaction center) and Clostridia (forming heat-resistant growth of H. modesticaldum, and our recent studies demon- endospores). Most of the previous studies of heliobacteria, strated that D-sugars can also support the growth of H. -
Going from Microbial Ecology to Genome Data and Back: Studies on a Haloalkaliphilic Bacterium Isolated from Soap Lake, Washington State
Missouri University of Science and Technology Scholars' Mine Biological Sciences Faculty Research & Creative Works Biological Sciences 01 Nov 2014 Going from Microbial Ecology to Genome Data and Back: Studies on a Haloalkaliphilic Bacterium Isolated from Soap Lake, Washington State Melanie R. Mormile Missouri University of Science and Technology, [email protected] Follow this and additional works at: https://scholarsmine.mst.edu/biosci_facwork Part of the Chemical Engineering Commons Recommended Citation M. R. Mormile, "Going from Microbial Ecology to Genome Data and Back: Studies on a Haloalkaliphilic Bacterium Isolated from Soap Lake, Washington State," Frontiers in Microbiology, vol. 5, Frontiers Media, Nov 2014. The definitive version is available at https://doi.org/10.3389/fmicb.2014.00628 This work is licensed under a Creative Commons Attribution 4.0 License. This Article - Conference proceedings is brought to you for free and open access by Scholars' Mine. It has been accepted for inclusion in Biological Sciences Faculty Research & Creative Works by an authorized administrator of Scholars' Mine. This work is protected by U. S. Copyright Law. Unauthorized use including reproduction for redistribution requires the permission of the copyright holder. For more information, please contact [email protected]. ORIGINAL RESEARCH ARTICLE published: 19 November 2014 doi: 10.3389/fmicb.2014.00628 Going from microbial ecology to genome data and back: studies on a haloalkaliphilic bacterium isolated from Soap Lake, Washington State Melanie R. Mormile* Department of Biological Sciences, Missouri University of Science and Technology, Rolla, MO, USA − Edited by: Soap Lake is a meromictic, alkaline (∼pH 9.8) and saline (∼14–140 g liter 1) lake Aharon Oren, The Hebrew University located in the semiarid area of eastern Washington State. -
Tracking Molecular Evolution of Photosynthesis by Characterization
Proc. Natl. Acad. Sci. USA Vol. 95, pp. 14851–14856, December 1998 Evolution Tracking molecular evolution of photosynthesis by characterization of a major photosynthesis gene cluster from Heliobacillus mobilis (bacteriochlorophyll biosynthesisycytochrome bc complexyphylogenetic analysisyphotosystem origin) JIN XIONG*, KAZUHITO INOUE†, AND CARL E. BAUER*‡ *Department of Biology, Indiana University, Bloomington, IN 47405; and †Department of Biological Sciences, Kanagawa University, Hiratsuka, Kanagawa 259-1293, Japan Communicated by Norman R. Pace, University of California, Berkeley, CA, October 13, 1998 (received for review July 21, 1998) ABSTRACT A DNA sequence has been obtained for a With the aim of providing more substantive information on 35.6-kb genomic segment from Heliobacillus mobilis that con- the evolution of photosynthesis, we have undertaken an ex- tains a major cluster of photosynthesis genes. A total of 30 tensive characterization of photosynthesis genes from Helioba- ORFs were identified, 20 of which encode enzymes for bacte- cillus mobilis. A gene cluster was found to encode enzymes for riochlorophyll and carotenoid biosynthesis, reaction-center bacteriochlorophyll and carotenoid biosynthesis, as well as the (RC) apoprotein, and cytochromes for cyclic electron trans- RC core polypeptide and cytochromes involved in photosyn- port. Donor side electron-transfer components to the RC thetic electron transfer. Phylogenetic studies based on this new include a putative RC-associated cytochrome c553 and a sequence information provide important clues for the unique unique four-large-subunit cytochrome bc complex consisting evolutionary position of H. mobilis in the course of develop- of Rieske Fe-S protein (encoded by petC), cytochrome b6 ment of photosynthesis. (petB), subunit IV (petD), and a diheme cytochrome c (petX). -
Lists of Names of Prokaryotic Candidatus Taxa
NOTIFICATION LIST: CANDIDATUS LIST NO. 1 Oren et al., Int. J. Syst. Evol. Microbiol. DOI 10.1099/ijsem.0.003789 Lists of names of prokaryotic Candidatus taxa Aharon Oren1,*, George M. Garrity2,3, Charles T. Parker3, Maria Chuvochina4 and Martha E. Trujillo5 Abstract We here present annotated lists of names of Candidatus taxa of prokaryotes with ranks between subspecies and class, pro- posed between the mid- 1990s, when the provisional status of Candidatus taxa was first established, and the end of 2018. Where necessary, corrected names are proposed that comply with the current provisions of the International Code of Nomenclature of Prokaryotes and its Orthography appendix. These lists, as well as updated lists of newly published names of Candidatus taxa with additions and corrections to the current lists to be published periodically in the International Journal of Systematic and Evo- lutionary Microbiology, may serve as the basis for the valid publication of the Candidatus names if and when the current propos- als to expand the type material for naming of prokaryotes to also include gene sequences of yet-uncultivated taxa is accepted by the International Committee on Systematics of Prokaryotes. Introduction of the category called Candidatus was first pro- morphology, basis of assignment as Candidatus, habitat, posed by Murray and Schleifer in 1994 [1]. The provisional metabolism and more. However, no such lists have yet been status Candidatus was intended for putative taxa of any rank published in the journal. that could not be described in sufficient details to warrant Currently, the nomenclature of Candidatus taxa is not covered establishment of a novel taxon, usually because of the absence by the rules of the Prokaryotic Code. -
Blankenship Publications Sept 2020
Robert E. Blankenship Formerly at: Departments of Biology and Chemistry Washington University in St. Louis St. Louis, Missouri 63130 USA Current Address: 3536 S. Kachina Dr. Tempe, Arizona 85282 USA Tel (480) 518-2871 Email: [email protected] Google Scholar: https://scholar.google.com/citations?user=nXJkAnAAAAAJ&hl=en&oi=ao ORCID ID: 0000-0003-0879-9489 CITATION STATISTICS Google Scholar (September 2020) All Since 2015 Citations: 33,007 13,091 h-index: 81 43 i10-index: 319 177 Web of Science (September 2020) Sum of the Times Cited: 20,070 Sum of Times Cited without self-citations: 18,379 Citing Articles: 12,322 Citing Articles without self-citations: 11,999 Average Citations per Item: 43.82 h-index: 66 PUBLICATIONS: (441 total) B = Book; BR = Book Review; CP = Conference Proceedings; IR = Invited Review; R = Refereed; MM = Multimedia rd 441. Blankenship, RE (2021) Molecular Mechanisms of Photosynthesis, 3 Ed., Wiley,Chichester. Manuscript in Preparation. (B) 440. Kiang N, Parenteau, MN, Swingley W, Wolf BM, Brodderick J, Blankenship RE, Repeta D, Detweiler A, Bebout LE, Schladweiler J, Hearne C, Kelly ET, Miller KA, Lindemann R (2020) Isolation and characterization of a chlorophyll d-containing cyanobacterium from the site of the 1943 discovery of chlorophyll d. Manuscript in Preparation. 439. King JD, Kottapalli JS, and Blankenship RE (2020) A binary chimeragenesis approachreveals long-range tuning of copper proteins. Submitted. (R) 438. Wolf BM, Barnhart-Dailey MC, Timlin JA, and Blankenship RE (2020) Photoacclimation in a newly isolated Eustigmatophyte alga capable of growth using far-red light. Submitted. (R) 437. Chen M and Blankenship RE (2021) Photosynthesis. -
The Physiological Effects of Phycobilisome Antenna Modification on the Cyanobacterium Synechocystis Sp. PCC 6803
Washington University in St. Louis Washington University Open Scholarship All Theses and Dissertations (ETDs) Winter 1-1-2012 The hP ysiological Effects of Phycobilisome Antenna Modification on the Cyanobacterium Synechocystis sp. PCC 6803 Lawrence Edward Page Washington University in St. Louis Follow this and additional works at: https://openscholarship.wustl.edu/etd Recommended Citation Page, Lawrence Edward, "The hP ysiological Effects of Phycobilisome Antenna Modification on the Cyanobacterium Synechocystis sp. PCC 6803" (2012). All Theses and Dissertations (ETDs). 1015. https://openscholarship.wustl.edu/etd/1015 This Dissertation is brought to you for free and open access by Washington University Open Scholarship. It has been accepted for inclusion in All Theses and Dissertations (ETDs) by an authorized administrator of Washington University Open Scholarship. For more information, please contact [email protected]. WASHINGTON UNIVERSITY IN ST. LOUIS Division of Biology & Biomedical Sciences Biochemistry Dissertation Examination Committee: Himadri Pakrasi, Chair Tuan-Hua David Ho Joseph Jez Tom Smith Gary Stormo Yinjie Tang The Physiological Effects of Phycobilisome Antenna Modification on the Cyanobacterium Synechocystis sp. PCC 6803 by Lawrence Edward Page II A dissertation presented to the Graduate School of Arts and Sciences of Washington University in partial fulfillment of the requirements for the degree of Doctor of Philosophy December 2012 St. Louis, Missouri © Copyright 2012 by Lawrence Edward Page II. All rights reserved. -
Infant Weight Gain Trajectories Linked to Oral Microbiome Composition
bioRxiv preprint doi: https://doi.org/10.1101/208090; this version posted October 24, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. INFANT WEIGHT GAIN TRAJECTORIES LINKED TO ORAL MICROBIOME COMPOSITION Sarah J. C. Craig1,2, Daniel Blankenberg3, Alice Carla Luisa Parodi4, Ian M. Paul1,5, Leann L. Birch6, Jennifer S. Savage7,8, Michele E. Marini7, Jennifer L. Stokes5, Anton Nekrutenko3, Matthew Reimherr*9, Francesca Chiaromonte*1,9,10, and Kateryna D. Makova*1,2 (1) Center for Medical Genomics, Penn State University, University Park, PA, 16802, USA; (2) Department of Biology, Penn State University, University Park, PA, 16802, USA; (3) Department of Biochemistry and Molecular Biology, Penn State University, University Park, PA, 16802, USA; (4) Department of Mathematics, Politecnico di Milano, Piazza Leonardo da Vinci, 32, Milano, 20133, Italy; (5) Department of Pediatrics, Penn State College of Medicine, 500 University Drive, Hershey, PA, 17033, USA; (6) Department of Foods and Nutrition, 176 Dawson Hall, University of Georgia, Athens, GA, 30602, USA; (7) Center for Childhood Obesity Research, Penn State University, University Park, PA, 16802, USA; (8) Department of Nutritional Sciences, Penn State University, University Park, PA, 16802, USA; (9) Department of Statistics, Penn State University, University Park, PA, 16802, USA; (10) Sant’Anna School of Advanced Studies, Piazza Martiri della Libertà, 33, Pisa, 56127, Italy *Corresponding authors: Kateryna Makova ([email protected]), Francesca Chiaromonte ([email protected]), Matthew Reimherr ([email protected]) Keywords: microbiome, infant weight gain, Functional Data Analysis Running title: Functional Data Analysis of Microbiome Data bioRxiv preprint doi: https://doi.org/10.1101/208090; this version posted October 24, 2017. -
Photosynthesis Is Widely Distributed Among Proteobacteria As Demonstrated by the Phylogeny of Puflm Reaction Center Proteins
fmicb-08-02679 January 20, 2018 Time: 16:46 # 1 ORIGINAL RESEARCH published: 23 January 2018 doi: 10.3389/fmicb.2017.02679 Photosynthesis Is Widely Distributed among Proteobacteria as Demonstrated by the Phylogeny of PufLM Reaction Center Proteins Johannes F. Imhoff1*, Tanja Rahn1, Sven Künzel2 and Sven C. Neulinger3 1 Research Unit Marine Microbiology, GEOMAR Helmholtz Centre for Ocean Research, Kiel, Germany, 2 Max Planck Institute for Evolutionary Biology, Plön, Germany, 3 omics2view.consulting GbR, Kiel, Germany Two different photosystems for performing bacteriochlorophyll-mediated photosynthetic energy conversion are employed in different bacterial phyla. Those bacteria employing a photosystem II type of photosynthetic apparatus include the phototrophic purple bacteria (Proteobacteria), Gemmatimonas and Chloroflexus with their photosynthetic relatives. The proteins of the photosynthetic reaction center PufL and PufM are essential components and are common to all bacteria with a type-II photosynthetic apparatus, including the anaerobic as well as the aerobic phototrophic Proteobacteria. Edited by: Therefore, PufL and PufM proteins and their genes are perfect tools to evaluate the Marina G. Kalyuzhanaya, phylogeny of the photosynthetic apparatus and to study the diversity of the bacteria San Diego State University, United States employing this photosystem in nature. Almost complete pufLM gene sequences and Reviewed by: the derived protein sequences from 152 type strains and 45 additional strains of Nikolai Ravin, phototrophic Proteobacteria employing photosystem II were compared. The results Research Center for Biotechnology (RAS), Russia give interesting and comprehensive insights into the phylogeny of the photosynthetic Ivan A. Berg, apparatus and clearly define Chromatiales, Rhodobacterales, Sphingomonadales as Universität Münster, Germany major groups distinct from other Alphaproteobacteria, from Betaproteobacteria and from *Correspondence: Caulobacterales (Brevundimonas subvibrioides). -
Photosynthesis 481
Photosynthesis 481 C3 plants, which regulate the opening of stomatal in the dark by using respiration to utilize organic pores for gas exchange in leaves, also lack rubisco compounds from the environment. They are ther- and apparently use PEP carboxylase exclusively to mophilic bacteria found in hot springs around the fix CO2. world. They also distinguish themselves among the Contributions of the late Martin Gibbs to this arti- photosynthetic bacteria by possessing mobility. An cleare acknowledged. example is Chloroflexus aurantiacus. Gerald A. Berkowitz; Archie R. Portis, Jr.; Govindjee 4. Heliobacteria (Heliobacteriaceae). These are strictly anaerobic bacteria that contain bacterio- Bacterial Photosynthesis chlorophyll g. They grow primarily using organic Certain bacteria have the ability to perform photo- substrates and have not been shown to carry out synthesis. This was first noticed by Sergey Vinograd- autotrophic growth using only light and inorganic sky in 1889 and was later extensively investigated substrates. An example is Heliobacterium chlorum. by Cornelis B. Van Niel, who gave a general equa- Like plants, algae, and cyanobacteria, anoxygenic tion for bacterial photosynthesis. This is shown in photosynthetic bacteria are capable of photophos- reaction (9). phorylation, which is the production of adeno- sine triphosphate (ATP) from adenosine diphosphate bacteriochlorophyll 2H2A + CO2 + light −−−−−−−−−→ {CH2O}+2A + H2O (ADP) and inorganic phosphate (Pi) using light as the enzymes (9) primary energy source. Several investigators have suggested that the sole function of the light reaction where A represents any one of a number of reduc- in bacteria is to make ATP from ADP and Pi. The hy- tants, most commonly S (sulfur). drolysis energy of ATP (or the proton-motive force Photosynthetic bacteria cannot use water as the that precedes ATP formation) can then be used to hydrogen donor and are incapable of evolving oxy- drive the reduction of CO2 to carbohydrate by H2A gen. -
EXTREMOPHILES (ISSN: 1431-0651) 17: (4) Pp
EXTREMOPHILES (ISSN: 1431-0651) 17: (4) pp. 575-584. (2013) Planktonic bacterial community composition of an extremely shallow soda pond during a phytoplankton bloom revealed by cultivation and molecular cloning Andrea K. Borsodi1, Mónika Knáb1, Katalin Czeibert1, Károly Márialigeti1, Lajos Vörös2, Boglárka Somogyi2 1Department of Microbiology, Eötvös Loránd University, Pázmány P. sétány 1/C, H-1117 Budapest, Hungary 2Balaton Limnological Institute, Centre for Ecological Research, Hungarian Academy of Sciences, P.O. Box 35, H-8237, Tihany, Hungary Address of the corresponding author Andrea K. Borsodi Tel.: +36 1 381 2177 Fax.: +36 1 381 2178 E-mail: [email protected] 1 Abstract Böddi-szék is one of the shallow soda ponds located in the Kiskunság National Park, Hungary. In June 2008, immediately prior to drying out, an extensive algal bloom dominated by a green alga (Oocystis submarina Lagerheim) was observed in the extremely saline and alkaline water of the pond. The aim of the present study was to reveal the phylogenetic diversity of the bacterial communities inhabiting the water of Böddi-szék during the blooming event. By using two different selective media, altogether 110 aerobic bacterial strains were cultivated. According to the sequence analysis of the 16S rRNA gene, most of the strains belonged to alkaliphilic or alkalitolerant and moderately halophilic species of the genera Bacillus and Gracilibacillus (Firmicutes), Algoriphagus and Aquiflexum (Bacteroidetes), Alkalimonas and Halomonas (Gammaproteobacteria). Other strains were closely related to alkaliphilic and phototrophic purple non-sulfur bacteria of the genera Erythrobacter and Rhodobaca (Alphaproteobacteria). Analysis of the 16S rRNA gene-based clone library indicated that most of the total of 157 clone sequences affiliated with the anoxic phototrophic bacterial genera of Rhodobaca and Rhodobacter (Alphaproteobacteria), Ectothiorhodospira (Gammaproteobacteria) and Heliorestis (Firmicutes).