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Anoxygenic Photosynthesis in Photolithotrophic Sulfur Bacteria and Their Role in Detoxication of Hydrogen Sulfide
antioxidants Review Anoxygenic Photosynthesis in Photolithotrophic Sulfur Bacteria and Their Role in Detoxication of Hydrogen Sulfide Ivan Kushkevych 1,* , Veronika Bosáková 1,2 , Monika Vítˇezová 1 and Simon K.-M. R. Rittmann 3,* 1 Department of Experimental Biology, Faculty of Science, Masaryk University, 62500 Brno, Czech Republic; [email protected] (V.B.); [email protected] (M.V.) 2 Department of Biology, Faculty of Medicine, Masaryk University, 62500 Brno, Czech Republic 3 Archaea Physiology & Biotechnology Group, Department of Functional and Evolutionary Ecology, Universität Wien, 1090 Vienna, Austria * Correspondence: [email protected] (I.K.); [email protected] (S.K.-M.R.R.); Tel.: +420-549-495-315 (I.K.); +431-427-776-513 (S.K.-M.R.R.) Abstract: Hydrogen sulfide is a toxic compound that can affect various groups of water microorgan- isms. Photolithotrophic sulfur bacteria including Chromatiaceae and Chlorobiaceae are able to convert inorganic substrate (hydrogen sulfide and carbon dioxide) into organic matter deriving energy from photosynthesis. This process takes place in the absence of molecular oxygen and is referred to as anoxygenic photosynthesis, in which exogenous electron donors are needed. These donors may be reduced sulfur compounds such as hydrogen sulfide. This paper deals with the description of this metabolic process, representatives of the above-mentioned families, and discusses the possibility using anoxygenic phototrophic microorganisms for the detoxification of toxic hydrogen sulfide. Moreover, their general characteristics, morphology, metabolism, and taxonomy are described as Citation: Kushkevych, I.; Bosáková, well as the conditions for isolation and cultivation of these microorganisms will be presented. V.; Vítˇezová,M.; Rittmann, S.K.-M.R. -
The Position of Cyanobacteria in the World of Phototrophs
Carlsberg Res. Commun. Vol. 42, p. 77-98, 1977 THE POSITION OF CYANOBACTERIA IN THE WORLD OF PHOTOTROPHS. by ROGER Y STANIER D~partementde Biochimieet G6n6tiqueMicrobienne 28, rue du Dr Roux, 75015 Paris, France EMIL CHR. nANSENlecture delivered at the Carlsberg Laboratory Centennial and the Inauguration of the Carlsberg Research Center on September 28th, 1976 Key words: prokaryotic photosynthetic apparatus; obligate photoautotrophy; oxidative and reductive pentose phosphate cycles; nitrogen fixation; oxygenic photosynthesis; facultative anoxygenic photosynthesis; cyanobacterial ecology; cyanobacterial developmental patterns Recent advances in our knowledge of the biological properties of the cyanobacteria (former ,blue-green algae,) are reviewed. The subjects discussed include: cyanobacterial cell structure and development; comparative as- pects of photosyntetic structure and function in prokaryotes; carbon metabolism and its relation to obligate photoautotrophy; and special properties of cyanobacteria that are of ecological significance (temperature rela- tionships, nitrogen fixation and facultative anoxygenicphotosynthesis). 1. INTRODUCTION seated functional differences between the two The largest evolutionary discontinuity among kinds of cells could be appreciated only after contemporary organisms lies at the cellular the molecular biological revolution. level; it permits us to distinguish two biological In addition to the organisms long recognized superkingdoms, eukaryotes and prokaryotes as bacteria, the superkingdom of prokaryotes -
Int J Syst Evol Microbiol 67 1
Author version : International Journal of Systematic and Evolutionary Microbiology, vol.67(6); 2017; 1949-1956 Imhoffiella gen. nov.. a marine phototrophic member of family Chromatiaceae including the description of Imhoffiella purpurea sp. nov. and the reclassification of Thiorhodococcus bheemlicus Anil Kumar et al. 2007 as Imhoffiella bheemlica comb. nov. Nupur1, Mohit Kumar Saini1, Pradeep Kumar Singh1, Suresh Korpole1, Naga Radha Srinivas Tanuku2, Shinichi Takaichi3 and Anil Kumar Pinnaka1* 1Microbial Type Culture Collection and Gene Bank, CSIR-Institute of Microbial Technology, Sector 39A, Chandigarh – 160 036, INDIA 2CSIR-National Institute of Oceanography, Regional Centre, 176, Lawsons Bay Colony, Visakhapatnam-530017, INDIA 3Nippon Medical School, Department of Biology, Kyonan-cho, Musashino 180-0023, Japan Address for correspondence* Dr. P. Anil Kumar Microbial Type Culture Collection and Gene Bank, Institute of Microbial Technology (CSIR), Sector 39A, Chandigarh – 160 036, INDIA Email: [email protected] Telephone: 00-91-172-6665170 Running title Imhoffiella purpurea sp. nov. Subject category New taxa (Gammaproteobacteria) The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain AK35T is HF562219. A coccoid-shaped phototrophic purple sulfur bacterium was isolated from a coastal surface water sample collected from Visakhapatnam, India. Strain AK35T was Gram-negative, motile, purple colored, containing bacteriochlorophyll a and the carotenoid rhodopinal as major photosynthetic pigments. Strain AK35T was able to grow photoheterotrophically and could utilize a number of organic substrates. It was unable to grow photoautotrophically. Strain AK35T was able to utilize sulfide and thiosulfate as electron donors. The main fatty acids present were identified as C16:0, C18:1 T 7c and C16:1 7c and/or iso-C15:0 2OH (Summed feature 3) were identified. -
Coupled Reductive and Oxidative Sulfur Cycling in the Phototrophic Plate of a Meromictic Lake T
Geobiology (2014), 12, 451–468 DOI: 10.1111/gbi.12092 Coupled reductive and oxidative sulfur cycling in the phototrophic plate of a meromictic lake T. L. HAMILTON,1 R. J. BOVEE,2 V. THIEL,3 S. R. SATTIN,2 W. MOHR,2 I. SCHAPERDOTH,1 K. VOGL,3 W. P. GILHOOLY III,4 T. W. LYONS,5 L. P. TOMSHO,3 S. C. SCHUSTER,3,6 J. OVERMANN,7 D. A. BRYANT,3,6,8 A. PEARSON2 AND J. L. MACALADY1 1Department of Geosciences, Penn State Astrobiology Research Center (PSARC), The Pennsylvania State University, University Park, PA, USA 2Department of Earth and Planetary Sciences, Harvard University, Cambridge, MA, USA 3Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA, USA 4Department of Earth Sciences, Indiana University-Purdue University Indianapolis, Indianapolis, IN, USA 5Department of Earth Sciences, University of California, Riverside, CA, USA 6Singapore Center for Environmental Life Sciences Engineering, Nanyang Technological University, Nanyang, Singapore 7Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen, Braunschweig, Germany 8Department of Chemistry and Biochemistry, Montana State University, Bozeman, MT, USA ABSTRACT Mahoney Lake represents an extreme meromictic model system and is a valuable site for examining the organisms and processes that sustain photic zone euxinia (PZE). A single population of purple sulfur bacte- ria (PSB) living in a dense phototrophic plate in the chemocline is responsible for most of the primary pro- duction in Mahoney Lake. Here, we present metagenomic data from this phototrophic plate – including the genome of the major PSB, as obtained from both a highly enriched culture and from the metagenomic data – as well as evidence for multiple other taxa that contribute to the oxidative sulfur cycle and to sulfate reduction. -
The Eastern Nebraska Salt Marsh Microbiome Is Well Adapted to an Alkaline and Extreme Saline Environment
life Article The Eastern Nebraska Salt Marsh Microbiome Is Well Adapted to an Alkaline and Extreme Saline Environment Sierra R. Athen, Shivangi Dubey and John A. Kyndt * College of Science and Technology, Bellevue University, Bellevue, NE 68005, USA; [email protected] (S.R.A.); [email protected] (S.D.) * Correspondence: [email protected] Abstract: The Eastern Nebraska Salt Marshes contain a unique, alkaline, and saline wetland area that is a remnant of prehistoric oceans that once covered this area. The microbial composition of these salt marshes, identified by metagenomic sequencing, appears to be different from well-studied coastal salt marshes as it contains bacterial genera that have only been found in cold-adapted, alkaline, saline environments. For example, Rubribacterium was only isolated before from an Eastern Siberian soda lake, but appears to be one of the most abundant bacteria present at the time of sampling of the Eastern Nebraska Salt Marshes. Further enrichment, followed by genome sequencing and metagenomic binning, revealed the presence of several halophilic, alkalophilic bacteria that play important roles in sulfur and carbon cycling, as well as in nitrogen fixation within this ecosystem. Photosynthetic sulfur bacteria, belonging to Prosthecochloris and Marichromatium, and chemotrophic sulfur bacteria of the genera Sulfurimonas, Arcobacter, and Thiomicrospira produce valuable oxidized sulfur compounds for algal and plant growth, while alkaliphilic, sulfur-reducing bacteria belonging to Sulfurospirillum help balance the sulfur cycle. This metagenome-based study provides a baseline to understand the complex, but balanced, syntrophic microbial interactions that occur in this unique Citation: Athen, S.R.; Dubey, S.; inland salt marsh environment. -
The Reaction Center of Green Sulfur Bacteria1
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Biochimica et Biophysica Acta 1507 (2001) 260^277 www.bba-direct.com Review The reaction center of green sulfur bacteria1 G. Hauska a;*, T. Schoedl a, Herve¨ Remigy b, G. Tsiotis c a Lehrstuhl fu«r Zellbiologie und P£anzenphysiologie, Fakulta«tfu«r Biologie und Vorklinische Medizin, Universita«t Regensburg, 93040 Regenburg, Germany b Biozentrum, M.E. Mu«ller Institute of Microscopic Structural Biology, University of Basel, CH-4056 Basel, Switzerland c Division of Biochemistry, Department of Chemistry, University of Crete, 71409 Heraklion, Greece Received 9 April 2001; received in revised form 13 June 2001; accepted 5 July 2001 Abstract The composition of the P840-reaction center complex (RC), energy and electron transfer within the RC, as well as its topographical organization and interaction with other components in the membrane of green sulfur bacteria are presented, and compared to the FeS-type reaction centers of Photosystem I and of Heliobacteria. The core of the RC is homodimeric, since pscA is the only gene found in the genome of Chlorobium tepidum which resembles the genes psaA and -B for the heterodimeric core of Photosystem I. Functionally intact RC can be isolated from several species of green sulfur bacteria. It is generally composed of five subunits, PscA^D plus the BChl a-protein FMO. Functional cores, with PscA and PscB only, can be isolated from Prostecochloris aestuarii. The PscA-dimer binds P840, a special pair of BChl a-molecules, the primary electron acceptor A0, which is a Chl a-derivative and FeS-center FX. -
Horizontal Operon Transfer, Plasmids, and the Evolution of Photosynthesis in Rhodobacteraceae
The ISME Journal (2018) 12:1994–2010 https://doi.org/10.1038/s41396-018-0150-9 ARTICLE Horizontal operon transfer, plasmids, and the evolution of photosynthesis in Rhodobacteraceae 1 2 3 4 1 Henner Brinkmann ● Markus Göker ● Michal Koblížek ● Irene Wagner-Döbler ● Jörn Petersen Received: 30 January 2018 / Revised: 23 April 2018 / Accepted: 26 April 2018 / Published online: 24 May 2018 © The Author(s) 2018. This article is published with open access Abstract The capacity for anoxygenic photosynthesis is scattered throughout the phylogeny of the Proteobacteria. Their photosynthesis genes are typically located in a so-called photosynthesis gene cluster (PGC). It is unclear (i) whether phototrophy is an ancestral trait that was frequently lost or (ii) whether it was acquired later by horizontal gene transfer. We investigated the evolution of phototrophy in 105 genome-sequenced Rhodobacteraceae and provide the first unequivocal evidence for the horizontal transfer of the PGC. The 33 concatenated core genes of the PGC formed a robust phylogenetic tree and the comparison with single-gene trees demonstrated the dominance of joint evolution. The PGC tree is, however, largely incongruent with the species tree and at least seven transfers of the PGC are required to reconcile both phylogenies. 1234567890();,: 1234567890();,: The origin of a derived branch containing the PGC of the model organism Rhodobacter capsulatus correlates with a diagnostic gene replacement of pufC by pufX. The PGC is located on plasmids in six of the analyzed genomes and its DnaA- like replication module was discovered at a conserved central position of the PGC. A scenario of plasmid-borne horizontal transfer of the PGC and its reintegration into the chromosome could explain the current distribution of phototrophy in Rhodobacteraceae. -
Carbon Flow of Heliobacteria Is Related More
Supplemental Material can be found at: http://www.jbc.org/content/suppl/2010/08/31/M110.163303.DC1.html THE JOURNAL OF BIOLOGICAL CHEMISTRY VOL. 285, NO. 45, pp. 35104–35112, November 5, 2010 © 2010 by The American Society for Biochemistry and Molecular Biology, Inc. Printed in the U.S.A. Carbon Flow of Heliobacteria Is Related More to Clostridia than to the Green Sulfur Bacteria*□S Received for publication, July 14, 2010, and in revised form, August 30, 2010 Published, JBC Papers in Press, August 31, 2010, DOI 10.1074/jbc.M110.163303 Kuo-Hsiang Tang‡§1,2, Xueyang Feng¶1, Wei-Qin Zhuangʈ, Lisa Alvarez-Cohenʈ, Robert E. Blankenship‡§, and Yinjie J. Tang¶3 From the Departments of ‡Biology, §Chemistry, and ¶Energy, Environment, and Chemical Engineering, Washington University, St. Louis, Missouri 63130 and the ʈDepartment of Civil and Environmental Engineering, University of California, Berkeley, California 94720 The recently discovered heliobacteria are the only Gram-pos- cultured heliobacteria (2), Heliobacterium modesticaldum is itive photosynthetic bacteria that have been cultured. One of the the only one that can grow at temperatures of Ͼ50 °C. Madigan unique features of heliobacteria is that they have properties of and co-workers (1, 3) reported that pyruvate, lactate, acetate both the photosynthetic green sulfur bacteria (containing the (ϩHCOϪ), or yeast extract can support the phototrophic 3 Downloaded from type I reaction center) and Clostridia (forming heat-resistant growth of H. modesticaldum, and our recent studies demon- endospores). Most of the previous studies of heliobacteria, strated that D-sugars can also support the growth of H. -
Tracking Molecular Evolution of Photosynthesis by Characterization
Proc. Natl. Acad. Sci. USA Vol. 95, pp. 14851–14856, December 1998 Evolution Tracking molecular evolution of photosynthesis by characterization of a major photosynthesis gene cluster from Heliobacillus mobilis (bacteriochlorophyll biosynthesisycytochrome bc complexyphylogenetic analysisyphotosystem origin) JIN XIONG*, KAZUHITO INOUE†, AND CARL E. BAUER*‡ *Department of Biology, Indiana University, Bloomington, IN 47405; and †Department of Biological Sciences, Kanagawa University, Hiratsuka, Kanagawa 259-1293, Japan Communicated by Norman R. Pace, University of California, Berkeley, CA, October 13, 1998 (received for review July 21, 1998) ABSTRACT A DNA sequence has been obtained for a With the aim of providing more substantive information on 35.6-kb genomic segment from Heliobacillus mobilis that con- the evolution of photosynthesis, we have undertaken an ex- tains a major cluster of photosynthesis genes. A total of 30 tensive characterization of photosynthesis genes from Helioba- ORFs were identified, 20 of which encode enzymes for bacte- cillus mobilis. A gene cluster was found to encode enzymes for riochlorophyll and carotenoid biosynthesis, reaction-center bacteriochlorophyll and carotenoid biosynthesis, as well as the (RC) apoprotein, and cytochromes for cyclic electron trans- RC core polypeptide and cytochromes involved in photosyn- port. Donor side electron-transfer components to the RC thetic electron transfer. Phylogenetic studies based on this new include a putative RC-associated cytochrome c553 and a sequence information provide important clues for the unique unique four-large-subunit cytochrome bc complex consisting evolutionary position of H. mobilis in the course of develop- of Rieske Fe-S protein (encoded by petC), cytochrome b6 ment of photosynthesis. (petB), subunit IV (petD), and a diheme cytochrome c (petX). -
Dark Aerobic Sulfide Oxidation by Anoxygenic Phototrophs in the Anoxic Waters 2 of Lake Cadagno 3 4 Jasmine S
bioRxiv preprint doi: https://doi.org/10.1101/487272; this version posted December 6, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Dark aerobic sulfide oxidation by anoxygenic phototrophs in the anoxic waters 2 of Lake Cadagno 3 4 Jasmine S. Berg1,2*, Petra Pjevac3, Tobias Sommer4, Caroline R.T. Buckner1, Miriam Philippi1, Philipp F. 5 Hach1, Manuel Liebeke5, Moritz Holtappels6, Francesco Danza7,8, Mauro Tonolla7,8, Anupam Sengupta9, , 6 Carsten J. Schubert4, Jana Milucka1, Marcel M.M. Kuypers1 7 8 1Department of Biogeochemistry, Max Planck Institute for Marine Microbiology, 28359 Bremen, Germany 9 2Institut de Minéralogie, Physique des Matériaux et Cosmochimie, Université Pierre et Marie Curie, CNRS UMR 10 7590, 4 Place Jussieu, 75252 Paris Cedex 05, France 11 3Division of Microbial Ecology, Department of Microbiology and Ecosystem Science, University of Vienna, 1090 12 Vienna, Austria 13 4Eawag, Swiss Federal Institute of Aquatic Science and Technology, Kastanienbaum, Switzerland 14 5Department of Symbiosis, Max Planck Institute for Marine Microbiology, 28359 Bremen, Germany 15 6Alfred-Wegener-Institut, Helmholtz-Zentrum für Polar- und Meeresforschung, Am Alten Hafen 26, 27568 16 Bremerhaven, Germany 17 7Laboratory of Applied Microbiology (LMA), Department for Environmental Constructions and Design (DACD), 18 University of Applied Sciences and Arts of Southern Switzerland (SUPSI), via Mirasole 22a, 6500 Bellinzona, 19 Switzerland 20 8Microbiology Unit, Department of Botany and Plant Biology, University of Geneva, 1211 Geneva, Switzerland 21 9Institute for Environmental Engineering, Department of Civil, Environmental and Geomatic Engineering, ETH 22 Zurich, 8093 Zurich, Switzerland. -
The Complete Genome Sequence of Chlorobium Tepidum TLS, a Photosynthetic, Anaerobic, Green-Sulfur Bacterium
The complete genome sequence of Chlorobium tepidum TLS, a photosynthetic, anaerobic, green-sulfur bacterium Jonathan A. Eisen*†, Karen E. Nelson*, Ian T. Paulsen*, John F. Heidelberg*, Martin Wu*, Robert J. Dodson*, Robert Deboy*, Michelle L. Gwinn*, William C. Nelson*, Daniel H. Haft*, Erin K. Hickey*, Jeremy D. Peterson*, A. Scott Durkin*, James L. Kolonay*, Fan Yang*, Ingeborg Holt*, Lowell A. Umayam*, Tanya Mason*, Michael Brenner*, Terrance P. Shea*, Debbie Parksey*, William C. Nierman*, Tamara V. Feldblyum*, Cheryl L. Hansen*, M. Brook Craven*, Diana Radune*, Jessica Vamathevan*, Hoda Khouri*, Owen White*, Tanja M. Gruber‡, Karen A. Ketchum*§, J. Craig Venter*, Herve´ Tettelin*, Donald A. Bryant¶, and Claire M. Fraser* *The Institute for Genomic Research (TIGR), 9712 Medical Center Drive, Rockville, MD 20850; ¶Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA 16802; and ‡Department of Stomatology, Microbiology and Immunology, University of California, San Francisco, CA 94143 Communicated by Alexander N. Glazer, University of California System, Oakland, CA, March 28, 2002 (received for review January 8, 2002) The complete genome of the green-sulfur eubacterium Chlorobium Here we report the determination and analysis of the complete tepidum TLS was determined to be a single circular chromosome of genome of C. tepidum TLS, the type strain of this species. 2,154,946 bp. This represents the first genome sequence from the phylum Chlorobia, whose members perform anoxygenic photosyn- Materials and Methods thesis by the reductive tricarboxylic acid cycle. Genome comparisons Genome Sequencing. C. tepidum genomic DNA was isolated as have identified genes in C. tepidum that are highly conserved among described (5). -
Evolution of Oxygenic Photosynthesis
EA44CH24-Fischer ARI 17 May 2016 19:44 ANNUAL REVIEWS Further Click here to view this article's online features: • Download figures as PPT slides • Navigate linked references • Download citations Evolution of Oxygenic • Explore related articles • Search keywords Photosynthesis Woodward W. Fischer, James Hemp, and Jena E. Johnson Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, California 91125; email: wfi[email protected] Annu. Rev. Earth Planet. Sci. 2016. 44:647–83 Keywords First published online as a Review in Advance on Great Oxidation Event, photosystem II, chlorophyll, oxygen evolving May 11, 2016 complex, molecular evolution, Precambrian The Annual Review of Earth and Planetary Sciences is online at earth.annualreviews.org Abstract This article’s doi: The origin of oxygenic photosynthesis was the most important metabolic 10.1146/annurev-earth-060313-054810 innovation in Earth history. It allowed life to generate energy and reducing Copyright c 2016 by Annual Reviews. power directly from sunlight and water, freeing it from the limited resources All rights reserved of geochemically derived reductants. This greatly increased global primary productivity and restructured ecosystems. The release of O2 as an end prod- Access provided by California Institute of Technology on 07/14/16. For personal use only. Annu. Rev. Earth Planet. Sci. 2016.44:647-683. Downloaded from www.annualreviews.org uct of water oxidation led to the rise of oxygen, which dramatically altered the redox state of Earth’s atmosphere and oceans and permanently changed all major biogeochemical cycles. Furthermore, the biological availability of O2 allowed for the evolution of aerobic respiration and novel biosynthetic pathways, facilitating much of the richness we associate with modern biology, including complex multicellularity.