Germline Mutations Affecting Gα11 in Hypoparathyroidism

Total Page:16

File Type:pdf, Size:1020Kb

Germline Mutations Affecting Gα11 in Hypoparathyroidism T h e new england journal o f medicine of a meta-analysis of studies of the effect of re- terone levels were increased. Although long- duced dietary salt on the incidence of cardiovas- term, modest reductions in salt intake result in cular events and death.1 The authors of the Co- small, physiologic increases in plasma renin ac- chrane report wrote that there was “no strong tivity,3 the preponderance of evidence suggests evidence of benefit.” In a summary statement, we that a reduced salt intake is associated with a wrote that this particular Cochrane analysis con- decreased risk of cardiovascular events and cluded that reducing dietary salt intake did not death. Furthermore, it is worth remembering decrease the risk of death or cardiovascular dis- that diuretics remain one of the most effective ease. Stigler et al. suggest that “indeterminate antihypertensive therapies, and their beneficial results,” rather than no significant effect, would effect on cardiovascular disease is well docu- be a more appropriate interpretation of the analy- mented.4 Nevertheless, as we suggested, in sis. Both interpretations may be correct. Although terms of safety, the lower limit of salt consump- it may not be possible to reject the null hypothe- tion has not been clearly defined. sis with certainty (i.e., no effect of reduced salt), Theodore A. Kotchen, M.D. the analysis should have been powered to detect Allen W. Cowley, Jr., Ph.D. a clinically meaningful difference, and the con- Medical College of Wisconsin clusion of no effect provides more guidance than Milwaukee, WI “indeterminate results” to clinical decision mak- [email protected] ers. Focusing on these subtleties, however, miss- Edward D. Frohlich, M.D. es the point we made regarding the Cochrane re- Ochsner Medical Center port. As analyzed by others2 and as cited in our New Orleans, LA review, after the exclusion of a trial involving pa- Since publication of their article, the authors report no fur- ther potential conflict of interest. tients with heart failure who received aggressive diuretic therapy and combining data for patients 1. Taylor RS, Ashton KE, Moxham T, Hooper L, Ebrahim S. Reduced dietary salt for the prevention of cardiovascular dis- with and without hypertension, reduced salt in- ease: a meta-analysis of randomized controlled trials (Cochrane take was shown to be associated with a signifi- review). Am J Hypertens 2011;24:843-53. cant reduction in the rate of cardiovascular 2. He FJ, MacGregor GA. Salt reduction lowers cardiovascular risk: meta-analysis of outcome trials. Lancet 2011;378:380-2. events. 3. He FJ, Li J, Macgregor GA. Effect of longer term modest salt Thornton raises important questions: do rec- reduction on blood pressure: Cochrane systematic review and ommended reductions of dietary sodium stimu- meta-analysis of randomised trials. BMJ 2013;346:f1325. 4. Chobanian AV, Bakris GL, Black HR, et al. The Seventh Re- late the renin–angiotensin–aldosterone axis, and port of the Joint National Committee on Prevention, Detection, does this in turn contribute to cardiovascular Evaluation, and Treatment of High Blood Pressure: the JNC 7 disease? In trials of abrupt and severe salt re- report. JAMA 2003;289:2560-72. [Erratum, JAMA 2003;290:197.] striction, plasma renin activity and serum aldos- DOI: 10.1056/NEJMc1305326 Germline Mutations Affecting Gα11 in Hypoparathyroidism To the Editor: Extracellular calcium levels are laboratory findings consistent with autosomal tightly regulated by parathyroid hormone (PTH). dominant isolated hypoparathyroidism (Fig. 1). Insufficient production of this hormone, as ob- After ruling out the presence of mutations in served in nonsyndromic isolated hypoparathy- CaSR, PTH, and GCM2 in the index cases (not roidism, can be caused by mutations in PTH or shown), a genomewide scan revealed linkage the genes encoding the parathyroid-specific to a single chromosomal region for Family A transcription factor glial cells missing 2 (GCM2) (19p13.3; LOD score, 3.0). Candidate gene se- or the calcium-sensing receptor (CaSR). However, quencing resulted in the identification of a hetero- most cases of isolated hypoparathyroidism re- zygous nucleotide change in exon 2 of GNA11 main genetically undefined.1 (c.178C→T; p.Arg60Cys), the gene encoding the We investigated two unrelated white families α subunit of the guanine nucleotide-binding in which 15 living members had clinical and protein G11 (Gα11) (Fig. S1 in the Supplementary 2532 n engl j med 368;26 nejm.org june 27, 2013 correspondence Family A Family B 21 11 12 13 2 5 5 31 37 38 32 21 23 24 27 26 25 41 42 43 44 32 31 Patient No. Patient No. Variable 31 42 21 41 32 43 44 37 38 Variable 32 21 31 23 11 24 27 26 25 12 13 Calcium 2.25 2.10 2.19 2.27 2.08 2.25 2.16 2.06 1.98 Calcium 1.92 1.88 1.84 1.90 1.81 1.80 2.12 2.00 2.40 low nl. (2.15–2.70 mM) (2.10–2.55 mM) Phosphorus 1.25 2.30 n.d. 1.16 1.39 1.75 3.06 1.63 1.23 Phosphorus 2.37 1.48 2.35 1.48 1.72 1.58 1.79 1.58 0.99 elev. nl. (0.70–1.40 mM) (0.80–1.50 mM) PTH 5.90 1.20 3.00 8.20 0.90 4.10 1.70 n.d. n.d. PTH 3.00 0.90 1.50 0.90 1.60 0.90 0.64 1.16 0.90 nl. nl. (1.0–7.0 pmol/liter) (1.6–6.9 pmol/liter) bp bp 646 — 360 — 509 202 — 158 — 137 — 360 bp 646 bp Mutated Mutated 158 bp 202 bp 509 bp 137 bp Nonmutated Nonmutated FspI BsiEI Figure 1. Pedigrees and Laboratory and Genetic Findings for Two Families with Autosomal Dominant Isolated Hypoparathyroidism. Squares indicate male family members, circles female family members, black symbols affected family members, and white symbols un- affected family members; slashes indicate deceased family members; numbers outside squares and circles indicate family members for whom DNA was available for testing; numbers within white rhombi indicate the number of unaffected siblings. Arrows point to the index cases. Measurements for calcium, phosphorus, and parathyroid hormone (PTH) are shown (with adult normal ranges in parentheses) and reflect values at presentation except in the case of Patients 21 and 32, from whom samples were drawn after treatment was initiated. For affected members, mean (±SE) pretreatment serum levels of calcium were 2.15±0.02 mmol per liter in Family A and 1.91±0.04 mmol per liter in Family B, mean levels of phosphorus were 2.06±0.40 and 1.79±0.13 mmol per liter, respectively, and mean levels of PTH were 1.97±0.42 and 1.33±0.27 pmol per liter, respectively. Values for other variables among patients with autosomal dominant isolated hypo- parathyroidism for whom mean pretreatment levels were available were as follows: magnesium, 0.77±0.02 mmol per liter (10 patients; normal range, 0.7 to 1.0); 1,25-dihydroxyvitamin D, 81.8±10.0 pmol per liter (8 patients; normal range, 40 to 150); and urinary calcium:creatinine ratio, normal when measured (8 patients; normal range, <0.6 mmol:mmol). Two novel mutations affecting Gα11 (R60C and S211W) were identified by means of genetic linkage analysis for Family A and exome sequencing of a DNA sample from two affected members of Families A and B (see Fig. 1 in the Supplementary Appendix). Digestion of DNA (amplified by means of polymerase chain reaction) with the endonucleases FspI and BsiEI, respectively, confirmed the two mutations and revealed their segregation with the disease. Appendix, available with the full text of this let- identified. The nucleotide changes were present ter at NEJM.org). Whole-exome sequencing of only in affected family members, and both two affected members of Family A (Patients 37 changes affect amino acid residues that are and 44) confirmed this nucleotide transition. highly conserved in Gα11 and the closely relat- Exome sequencing of two members of Family B ed Gαq. (Patients 26 and 31) revealed a heterozygous Gα11 and Gαq mediate the intracellular sig- nucleotide transversion in exon 5 of GNA11 naling that depends on the generation of inositol (c.632C→G; p.Ser211Trp); no additional variant 1,4,5-trisphosphate and the activation of protein that affects the same gene in both families was kinase C and occurs downstream of CaSR,2 the n engl j med 368;26 nejm.org june 27, 2013 2533 T h e new england journal o f medicine main regulator of PTH synthesis and secretion. bined with whole-exome sequencing, revealed Homozygous inactivating CaSR mutations cause two different heterozygous mutations affecting severe neonatal hyperparathyroidism, as does the Gα11 as novel causes of autosomal dominant combined parathyroid-specific ablation of Gα11 isolated hypoparathyroidism. 3,4 and Gαq in mice. Conversely, activating CaSR Michael Mannstadt, M.D. mutations lead to hypocalcemia because of inap- Massachusetts General Hospital propriate PTH secretion.1 The latter findings Boston, MA are similar to those reported for our families Mark Harris, M.D. with autosomal dominant isolated hypoparathy- Mater Children’s Hospital roidism, thus making it plausible to suggest that Brisbane, QLD, Australia the identified Gα11 mutants increase signaling Bert Bravenboer, M.D., Ph.D. at this receptor. Catharina Ziekenhuis To evaluate this hypothesis, we analyzed both Eindhoven, the Netherlands mutants with the use of molecular modeling Sridhar Chitturi, M.B., B.S., M.D. (Fig. S2 in the Supplementary Appendix). On the Royal Darwin Hospital Tiwi, NT, Australia basis of the proposed crystal structure of Gα11, it is probable that the replacement of arginine 60 Koen M.A.
Recommended publications
  • Ubiquitylome Profiling of Parkin-Null Brain Reveals Dysregulation Of
    Neurobiology of Disease 127 (2019) 114–130 Contents lists available at ScienceDirect Neurobiology of Disease journal homepage: www.elsevier.com/locate/ynbdi Ubiquitylome profiling of Parkin-null brain reveals dysregulation of calcium T homeostasis factors ATP1A2, Hippocalcin and GNA11, reflected by altered firing of noradrenergic neurons Key J.a,1, Mueller A.K.b,1, Gispert S.a, Matschke L.b, Wittig I.c, Corti O.d,e,f,g, Münch C.h, ⁎ ⁎ Decher N.b, , Auburger G.a, a Exp. Neurology, Goethe University Medical School, 60590 Frankfurt am Main, Germany b Institute for Physiology and Pathophysiology, Vegetative Physiology and Marburg Center for Mind, Brain and Behavior - MCMBB; Clinic for Neurology, Philipps-University Marburg, 35037 Marburg, Germany c Functional Proteomics, SFB 815 Core Unit, Goethe University Medical School, 60590 Frankfurt am Main, Germany d Institut du Cerveau et de la Moelle épinière, ICM, Paris, F-75013, France e Inserm, U1127, Paris, F-75013, France f CNRS, UMR 7225, Paris, F-75013, France g Sorbonne Universités, Paris, F-75013, France h Institute of Biochemistry II, Goethe University Medical School, 60590 Frankfurt am Main, Germany ARTICLE INFO ABSTRACT Keywords: Parkinson's disease (PD) is the second most frequent neurodegenerative disorder in the old population. Among Parkinson's disease its monogenic variants, a frequent cause is a mutation in the Parkin gene (Prkn). Deficient function of Parkin Mitochondria triggers ubiquitous mitochondrial dysfunction and inflammation in the brain, but it remains unclear howse- Parkin lective neural circuits become vulnerable and finally undergo atrophy. Ubiquitin We attempted to go beyond previous work, mostly done in peripheral tumor cells, which identified protein Calcium targets of Parkin activity, an ubiquitin E3 ligase.
    [Show full text]
  • 140503 IPF Signatures Supplement Withfigs Thorax
    Supplementary material for Heterogeneous gene expression signatures correspond to distinct lung pathologies and biomarkers of disease severity in idiopathic pulmonary fibrosis Daryle J. DePianto1*, Sanjay Chandriani1⌘*, Alexander R. Abbas1, Guiquan Jia1, Elsa N. N’Diaye1, Patrick Caplazi1, Steven E. Kauder1, Sabyasachi Biswas1, Satyajit K. Karnik1#, Connie Ha1, Zora Modrusan1, Michael A. Matthay2, Jasleen Kukreja3, Harold R. Collard2, Jackson G. Egen1, Paul J. Wolters2§, and Joseph R. Arron1§ 1Genentech Research and Early Development, South San Francisco, CA 2Department of Medicine, University of California, San Francisco, CA 3Department of Surgery, University of California, San Francisco, CA ⌘Current address: Novartis Institutes for Biomedical Research, Emeryville, CA. #Current address: Gilead Sciences, Foster City, CA. *DJD and SC contributed equally to this manuscript §PJW and JRA co-directed this project Address correspondence to Paul J. Wolters, MD University of California, San Francisco Department of Medicine Box 0111 San Francisco, CA 94143-0111 [email protected] or Joseph R. Arron, MD, PhD Genentech, Inc. MS 231C 1 DNA Way South San Francisco, CA 94080 [email protected] 1 METHODS Human lung tissue samples Tissues were obtained at UCSF from clinical samples from IPF patients at the time of biopsy or lung transplantation. All patients were seen at UCSF and the diagnosis of IPF was established through multidisciplinary review of clinical, radiological, and pathological data according to criteria established by the consensus classification of the American Thoracic Society (ATS) and European Respiratory Society (ERS), Japanese Respiratory Society (JRS), and the Latin American Thoracic Association (ALAT) (ref. 5 in main text). Non-diseased normal lung tissues were procured from lungs not used by the Northern California Transplant Donor Network.
    [Show full text]
  • Mosaic Activating Mutations in GNA11 and GNAQ Are Associated with Phakomatosis Pigmentovascularis and Extensive Dermal Melanocytosis Anna C
    ORIGINAL ARTICLE Mosaic Activating Mutations in GNA11 and GNAQ Are Associated with Phakomatosis Pigmentovascularis and Extensive Dermal Melanocytosis Anna C. Thomas1,18, Zhiqiang Zeng2,18, Jean-Baptiste Rivie`re3,18, Ryan O’Shaughnessy4, Lara Al-Olabi1, Judith St.-Onge3, David J. Atherton5,He´le`ne Aubert6, Lorea Bagazgoitia7, Se´bastien Barbarot6, Emmanuelle Bourrat8,9, Christine Chiaverini10, W. Kling Chong11, Yannis Duffourd3, Mary Glover5, Leopold Groesser12, Smail Hadj-Rabia13, Henning Hamm14, Rudolf Happle15, Imran Mushtaq16, Jean-Philippe Lacour10, Regula Waelchli5, Marion Wobser14, Pierre Vabres3,17,19, E. Elizabeth Patton2,19 and Veronica A. Kinsler1,5,19 Common birthmarks can be an indicator of underlying genetic disease but are often overlooked. Mongolian blue spots (dermal melanocytosis) are usually localized and transient, but they can be extensive, permanent, and associated with extracutaneous abnormalities. Co-occurrence with vascular birthmarks defines a subtype of phakomatosis pigmentovascularis, a group of syndromes associated with neurovascular, ophthalmological, overgrowth, and malignant complications. Here, we discover that extensive dermal melanocytosis and pha- komatosis pigmentovascularis are associated with activating mutations in GNA11 and GNAQ, genes that encode Ga subunits of heterotrimeric G proteins. The mutations were detected at very low levels in affected tissues but were undetectable in the blood, indicating that these conditions are postzygotic mosaic disorders. R183C Q209L In vitro expression of mutant GNA11 and GNA11 in human cell lines demonstrated activation of the downstream p38 MAPK signaling pathway and the p38, JNK, and ERK pathways, respectively. Transgenic R183C mosaic zebrafish models expressing mutant GNA11 under promoter mitfa developed extensive dermal melanocytosis recapitulating the human phenotype. Phakomatosis pigmentovascularis and extensive dermal melanocytosis are therefore diagnoses in the group of mosaic heterotrimeric G-protein disorders, joining McCune-Albright and Sturge-Weber syndromes.
    [Show full text]
  • Identification of Novel GNAS Mutations in Intramuscular Myxoma Using Next- Generation Sequencing with Single-Molecule Tagged Molecular Inversion Probes Elise M
    Bekers et al. Diagnostic Pathology (2019) 14:15 https://doi.org/10.1186/s13000-019-0787-3 RESEARCH Open Access Identification of novel GNAS mutations in intramuscular myxoma using next- generation sequencing with single-molecule tagged molecular inversion probes Elise M. Bekers1,2* , Astrid Eijkelenboom1, Paul Rombout1, Peter van Zwam3, Suzanne Mol4, Emiel Ruijter5, Blanca Scheijen1 and Uta Flucke1 Abstract Background: Intramuscular myxoma (IM) is a hypocellular benign soft tissue neoplasm characterized by abundant myxoid stroma and occasional hypercellular areas. These tumors can, especially on biopsy material, be difficult to distinguish from low-grade fibromyxoid sarcoma or low-grade myxofibrosarcoma. GNAS mutations are frequently involved in IM, in contrast to these other malignant tumors. Therefore, sensitive molecular techniques for detection of GNAS aberrations in IM, which frequently yield low amounts of DNA due to poor cellularity, will be beneficial for differential diagnosis. Methods: In our study, a total of 34 IM samples from 33 patients were analyzed for the presence of GNAS mutations, of which 29 samples were analyzed using a gene-specific TaqMan genotyping assay for the detection of GNAS hotspot mutations c.601C > T and c602G > A in IM, and 32 samples using a novel next generation sequencing (NGS)-based approach employing single-molecule tagged molecular inversion probes (smMIP) to identify mutations in exon 8 and 9 of GNAS. Results between the two assays were compared for their ability to detect GNAS mutations with high confidence. Results: In total, 23 of 34 samples were successfully analyzed with both techniques showing GNAS mutations in 12 out of 23 (52%) samples.
    [Show full text]
  • Supporting Information
    Supporting Information Jin et al. 10.1073/pnas.1418629112 SI Materials and Methods Santa Cruz Biotechnology, 1:100), anti–neural-specific β-tubulin − − − − Animals. Mice carrying the Gas1 (1), Shh (2), Cdo , Boc (3), (Tuj1, mouse, Millipore, 1:800), anti-Neurotrophin receptor P75 f − Smo (4), Gnaz (5), and transgenic Wnt1:Cre (6) alleles were (Rabbit, Millipore, 1:200), anti-GFP (rabbit, Invitrogen, 1:100), − − − previously described. For simplicity, Gas1 , Cdo ,andBoc were anti-mouse Gas1 (goat, R&D Systems, 1:200), and anti-HuC/D used for the Lac-Z knock-in allele of Gas1 and β-geo–internal (mouse, Molecular Probes, 1:100). Alexa Fluor 488- and Alexa ribosomal entry site (IRES) human placental alkaline phosphatase Fluor 568-conjugated secondary antibodies (Invitrogen) against (hPLAP) gene-trapped alleles of Cdo and Boc, respectively. Ap- specific species (goat, mouse, and rabbit) were used for detection propriate mating schemes were designed to generate embryos of (Molecular Probes, all at 1:1,000). DAPI (Sigma) was used at desired genotypes, including controls. Embryo stages are specified 1 μg/mL for staining of DNA. in the text. The vaginal plug date is designated as embryonic day 0.5 (E0.5), following convention. For genotyping, tail or embryo Neurosphere Culture. Neurosphere-like bodies were generated −/− sac DNAs were used. Oligonucleotide primers and conditions using whole guts dissected from E11.5 wild-type or Gas1 for PCR are described in corresponding publications and on the embryos as previously described (7–9). They were dissociated in f Jackson Laboratory (JAX) website. The Gas1 allele was gener- basal media by mechanical pipetting, then plated into culture ated for this work, and its characterization is detailed in Fig.
    [Show full text]
  • Uveal Melanoma: GNAQ and GNA11 Mutations in a Greek Population
    ANTICANCER RESEARCH 37 : 5719-5726 (2017) doi:10.21873/anticanres.12010 Uveal Melanoma: GNAQ and GNA11 Mutations in a Greek Population FILIPPOS PSINAKIS 1, ANASTASIA KATSELI 2, CHRYSSANTHY KOUTSANDREA 1, KONSTANTINA FRANGIA 3, LINA FLORENTIN 2, DESPINA APOSTOLOPOULOU 2, KONSTANTINA DIMAKOPOULOU 4, DIMITRIOS PAPAKONSTANTINOU 5, ELENI GEORGOPOULOU 6 and DIMITRIOS BROUZAS 1 11st Department of Ophthalmology, National and Kapodistrian University of Athens, Athens, Greece; 2ALFA LAB, Molecular Biology and Cytogenetics Center, Leto Maternity Hospital, Athens, Greece; 3HistoBio Diagnosis Pathology Center, Athens, Greece; 4Department of Hygiene, Epidemiology and Medical Statistics, Medical School, National and Kapodistrian University of Athens, Athens, Greece; 5Department of Opthalmology, University of Athens, Georgios Gennimatas General Hospital, Athens, Greece; 6Private Practice, Athens, Greece Abstract. Background/Aim: Uveal melanoma is the most Uveal melanoma (UM) is the most common primary common primary adult intraocular malignancy. It is known malignancy of the eye, arising from melanocytes of the to have a strong metastatic potential, fatal for the vast choroid, ciliary body and iris. The disruption of specific majority of patients. In recent years, meticulous cytogenetic signaling pathways is considered to be involved in its and molecular profiling has led to precise prognostication, tumorigenesis. One of the main known pathways is mitogen- that unfortunately is not matched by advancements in activated protein kinase (MAPK)/ERK, known to be adjuvant therapies. G Protein subunits alpha Q (GNAQ) and disturbed as a result of G protein subunit alpha Q ( GNAQ ) alpha 11 (GNA11) are two of the major driver genes that or subunit alpha 11 ( GNA11 ) mutations (1). These mutations contribute to the development of uveal melanoma.
    [Show full text]
  • Molecular Discrimination of Cutaneous Squamous Cell Carcinoma from Actinic Keratosis and Normal Skin
    Modern Pathology (2011) 24, 963–973 & 2011 USCAP, Inc. All rights reserved 0893-3952/11 $32.00 963 Molecular discrimination of cutaneous squamous cell carcinoma from actinic keratosis and normal skin Seong Hui Ra, Xinmin Li and Scott Binder Department of Pathology and Laboratory Medicine, David Geffen School of Medicine at UCLA, Los Angeles, CA, USA Actinic keratosis is widely believed to be a neoplastic lesion and a precursor to invasive squamous cell carcinoma. However, there has been some debate as to whether actinic keratosis is in fact actually squamous cell carcinoma and should be treated as such. As the clinical management and prognosis of patients is widely held to be different for each of these lesions, our goal was to identify unique gene signatures using DNA microarrays to discriminate among normal skin, actinic keratosis, and squamous cell carcinoma, and examine the molecular pathways of carcinogenesis involved in the progression from normal skin to squamous cell carcinoma. Formalin-fixed and paraffin-embedded blocks of skin: five normal skins (pooled), six actinic keratoses, and six squamous cell carcinomas were retrieved. The RNA was extracted and amplified. The labeled targets were hybridized to the Affymetrix human U133plus2.0 array and the acquisition and initial quantification of array images were performed using the GCOS (Affymetrix). The subsequent data analyses were performed using DNA-Chip Analyzer and Partek Genomic Suite 6.4. Significant differential gene expression (42 fold change, Po0.05) was seen with 382 differentially expressed genes between squamous cell carcinoma and normal skin, 423 differentially expressed genes between actinic keratosis and normal skin, and 9 differentially expressed genes between actinic keratosis and squamous cell carcinoma.
    [Show full text]
  • S41598-019-44584-7.Pdf
    www.nature.com/scientificreports OPEN Functional characterisation of a novel class of in-frame insertion variants of KRAS and HRAS Received: 1 February 2019 Astrid Eijkelenboom1, Frederik M. A. van Schaik2, Robert M. van Es2, Roel W. Ten Broek1, Accepted: 17 May 2019 Tuula Rinne 3, Carine van der Vleuten4, Uta Flucke1, Marjolijn J. L. Ligtenberg1,3 & Published: xx xx xxxx Holger Rehmann2,5 Mutations in the RAS genes are identifed in a variety of clinical settings, ranging from somatic mutations in oncology to germline mutations in developmental disorders, also known as ‘RASopathies’, and vascular malformations/overgrowth syndromes. Generally single amino acid substitutions are identifed, that result in an increase of the GTP bound fraction of the RAS proteins causing constitutive signalling. Here, a series of 7 in-frame insertions and duplications in HRAS (n = 5) and KRAS (n = 2) is presented, resulting in the insertion of 7–10 amino acids residues in the switch II region. These variants were identifed in routine diagnostic screening of 299 samples for somatic mutations in vascular malformations/overgrowth syndromes (n = 6) and in germline analyses for RASopathies (n = 1). Biophysical characterization shows the inability of Guanine Nucleotide Exchange Factors to induce GTP loading and reduced intrinsic and GAP-stimulated GTP hydrolysis. As a consequence of these opposing efects, increased RAS signalling is detected in a cellular model system. Therefore these in-frame insertions represent a new class of weakly activating clinically relevant RAS variants. Overgrowth syndromes, including vascular malformations represent a spectrum of conditions with congenital, aberrant vascular structures combined with overgrowth of surrounding tissue1–4.
    [Show full text]
  • Supplementary Table S1. Summary of the Six Next-Generation Sequencing (NGS) Studies Containing 241 Paired Melanoma Tumor/Normal Samples
    Supplementary Table S1. Summary of the six next-generation sequencing (NGS) studies containing 241 paired melanoma tumor/normal samples Study NGS # paired tumor-normal Tumor subtype Reference ID technology samples 1 Whole genome 25 23 cutaneous, 2 acral Berger et al., 2012 (1) 95 cutaneous, 5 acral, 2 mucosal, 1 uveal, and 18 2 Whole exome 121 Hodis et al., 2012 (2) unknown 61 cutaneous, 14 acral, 7 mucosal, 5 uveal, and 12 Krauthammer et al., 2012 3 Whole exome 99* unknown (3) 4 Whole exome 7 7 cutaneous Nikolaev et al., 2012 (4) 5 Whole exome 8 8 cutaneous Stark et al., 2012 (5) 6 Whole exome 14 14 cutaneous Wei et al., 2011 (6) 187 cutaneous, 19 acral, 9 mucosal, 6 uveal, and 30 Total 241# unknown *48 tumor samples without normal samples were excluded from our study. #23 paired samples in Berger et al. (2012) were used in Hodis et al. (2012). In addition, there were 10 samples without any mutations in Krauthammer et al. (2012). These samples were excluded in our analysis. 1 Supplementary Table S2. Summary of known driver mutations detected in the 241 melanoma samples Mutation* Type # samples BRAF GNAQ GNA11 KIT NRAS present Acral 17 3 1 0 0 0 2 Mucosal 7 2 1 0 0 0 1 Uveal 6 3 0 0 3 0 0 Cutaneous 182 138 99 0 0 1 38 Unknown 29 26 20 0 0 0 6 Total 172 121 241 0 (0%) 3 (1.2%) 1 (0.4%) 47 (19.5%) (frequency) (71.3%) (50.2%) *Includes the somatic point mutations identified by the Vanderbilt melanoma SNaPshot assay and known to be functional and actionable (7).
    [Show full text]
  • Dasatinib Is an Effective Treatment for Angioimmunoblastic T-Cell
    Supplemental information Dasatinib Is An Effective Treatment For Angioimmunoblastic T-Cell Lymphoma Tran B. Nguyen1+, Mamiko Sakata-Yanagimoto1,2+*, Manabu Fujisawa3, Sharna Tanzima Nuhat3, Hiroaki Miyoshi4, Yasuhito Nannya5, Koichi Hashimoto6, Kota Fukumoto3, Olivier A. Bernard7, Yusuke Kiyoki2, Kantaro Ishitsuka2, Haruka Momose2, Shinichiro Sukegawa2, Atsushi Shinagawa8, Takuya Suyama8, Yuji Sato9, Hidekazu Nishikii1,2, Naoshi Obara1,2, Manabu Kusakabe1,2, Shintaro Yanagimoto10, Seishi Ogawa5, Koichi Ohshima4, and Shigeru Chiba1,2,11* 1. Department of Hematology, Faculty of Medicine, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8575, Japan. 2. Department of Hematology, University of Tsukuba Hospital, 2-1-1 Amakubo, Tsukuba, Ibaraki 305-8576, Japan. 3. Department of Hematology, Graduate School of Comprehensive Human Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8575, Japan. 4. Department of Pathology, Kurume University, School of Medicine, 67 Asahi, Kurume, Fukuoka 830-0011, Japan. 5. Department of Pathology and Tumor Biology, Graduate School of Medicine, Kyoto University, Yoshida-Konoe-cho, Sakyo-ku, Kyoto 606-8501, Japan. 6. Tsukuba Clinical Research and Development Organization (TCReDo), University of Tsukuba, 1- 1-1 Tennodai, Tsukuba, Ibaraki 305-8575, Japan. 7. INSERM U1170, Gustave Roussy, Université Paris-Saclay, Equipe Labellisée Ligue Nationale Contre le Cancer, Villejuif, France. 8. Department of Hematology, Hitachi General Hospital, 2-1-1 Jonan-cho, Hitachi, Ibaraki 317-0077, Japan. 9. Department of Hematology and Oncology, Tsukuba Memorial Hospital, 1187-299 Kaname, Tsukuba, Ibaraki 300-2622, Japan. 10. Division for Health Service Promotion, University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113- 0033, Japan. 11. Life Science Center for Survival Dynamics, Tsukuba Advanced Research Alliance, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8575, Japan.
    [Show full text]
  • Autocrine IFN Signaling Inducing Profibrotic Fibroblast Responses By
    Downloaded from http://www.jimmunol.org/ by guest on September 23, 2021 Inducing is online at: average * The Journal of Immunology , 11 of which you can access for free at: 2013; 191:2956-2966; Prepublished online 16 from submission to initial decision 4 weeks from acceptance to publication August 2013; doi: 10.4049/jimmunol.1300376 http://www.jimmunol.org/content/191/6/2956 A Synthetic TLR3 Ligand Mitigates Profibrotic Fibroblast Responses by Autocrine IFN Signaling Feng Fang, Kohtaro Ooka, Xiaoyong Sun, Ruchi Shah, Swati Bhattacharyya, Jun Wei and John Varga J Immunol cites 49 articles Submit online. Every submission reviewed by practicing scientists ? is published twice each month by Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts http://jimmunol.org/subscription Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html http://www.jimmunol.org/content/suppl/2013/08/20/jimmunol.130037 6.DC1 This article http://www.jimmunol.org/content/191/6/2956.full#ref-list-1 Information about subscribing to The JI No Triage! Fast Publication! Rapid Reviews! 30 days* Why • • • Material References Permissions Email Alerts Subscription Supplementary The Journal of Immunology The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 2013 by The American Association of Immunologists, Inc. All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. This information is current as of September 23, 2021. The Journal of Immunology A Synthetic TLR3 Ligand Mitigates Profibrotic Fibroblast Responses by Inducing Autocrine IFN Signaling Feng Fang,* Kohtaro Ooka,* Xiaoyong Sun,† Ruchi Shah,* Swati Bhattacharyya,* Jun Wei,* and John Varga* Activation of TLR3 by exogenous microbial ligands or endogenous injury-associated ligands leads to production of type I IFN.
    [Show full text]
  • GNA11 Gene G Protein Subunit Alpha 11
    GNA11 gene G protein subunit alpha 11 Normal Function The GNA11 gene provides instructions for making one component, the alpha (a ) subunit, of a protein complex called a guanine nucleotide-binding protein (G protein). Each G protein is composed of three proteins called the alpha, beta, and gamma a subunits. Specifically, the protein produced from the GNA11 gene, called G 11, is the alpha subunit for a G protein called G11. In a process called signal transduction, G proteins trigger a complex network of signaling pathways that ultimately influence many cell functions. The G11 protein plays many roles in cells. It works with another protein called the calcium-sensing receptor ( CaSR) to affect processes that regulate calcium levels in the blood. CaSR proteins in kidney cells and cells of the parathyroid gland sense when a certain concentration of calcium in the blood is reached; the CaSR protein then stimulates the G11 subunits, a including G 11, to send signals that block processes that increase the amount of calcium in the blood. In particular, this signaling blocks the production and release of a hormone called parathyroid hormone. Parathyroid hormone enhances the release of calcium into the blood, so blocking this hormone prevents calcium release. In the kidneys, which filter fluid and waste products in the body and can reabsorb needed nutrients and release them back into the blood, G11 signaling blocks the reabsorption of calcium from the filtered fluids. G11 signaling is also involved in the growth and division (proliferation) and self- destruction (apoptosis) of cells in tissues throughout the body, including those in the eyes, skin, heart, and brain.
    [Show full text]