Electrophilic Aromatic Substitution
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Common Names for Selected Aromatic Groups
More Nomenclature: Common Names for Selected Aromatic Groups Phenyl group = or Ph = C6H5 = Aryl = Ar = aromatic group. It is a broad term, and includes any aromatic rings. Benzyl = Bn = It has a -CH2- (methylene) group attached to the benzene ring. This group can be used to name particular compounds, such as the one shown below. This compound has chlorine attached to a benzyl group, therefore it is called benzyl chloride. Benzoyl = Bz = . This is different from benzyl group (there is an extra “o” in the name). It has a carbonyl attached to the benzene ring instead of a methylene group. For example, is named benzoyl chloride. Therefore, it is sometimes helpful to recognize a common structure in order to name a compound. Example: Nomenclature: 3-phenylpentane Example: This is Amaize. It is used to enhance the yield of corn production. The systematic name for this compound is 2,4-dinitro-6-(1-methylpropyl)phenol. Polynuclear Aromatic Compounds Aromatic rings can fuse together to form polynuclear aromatic compounds. Example: It is two benzene rings fused together, and it is aromatic. The electrons are delocalized in both rings (think about all of its resonance form). Example: This compound is also aromatic, including the ring in the middle. All carbons are sp2 hybridized and the electron density is shared across all 5 rings. Example: DDT is an insecticide and helped to wipe out malaria in many parts of the world. Consequently, the person who discovered it (Muller) won the Nobel Prize in 1942. The systematic name for this compound is 1,1,1-trichloro-2,2-bis-(4-chlorophenyl)ethane. -
Brief Guide to the Nomenclature of Organic Chemistry
1 Brief Guide to the Nomenclature of Table 1: Components of the substitutive name Organic Chemistry (4S,5E)-4,6-dichlorohept-5-en-2-one for K.-H. Hellwich (Germany), R. M. Hartshorn (New Zealand), CH3 Cl O A. Yerin (Russia), T. Damhus (Denmark), A. T. Hutton (South 4 2 Africa). E-mail: [email protected] Sponsoring body: Cl 6 CH 5 3 IUPAC Division of Chemical Nomenclature and Structure suffix for principal hept(a) parent (heptane) one Representation. characteristic group en(e) unsaturation ending chloro substituent prefix 1 INTRODUCTION di multiplicative prefix S E stereodescriptors CHEMISTRY The universal adoption of an agreed nomenclature is a key tool for 2 4 5 6 locants ( ) enclosing marks efficient communication in the chemical sciences, in industry and Multiplicative prefixes (Table 2) are used when more than one for regulations associated with import/export or health and safety. fragment of a particular kind is present in a structure. Which kind of REPRESENTATION The International Union of Pure and Applied Chemistry (IUPAC) multiplicative prefix is used depends on the complexity of the provides recommendations on many aspects of nomenclature.1 The APPLIED corresponding fragment – e.g. trichloro, but tris(chloromethyl). basics of organic nomenclature are summarized here, and there are companion documents on the nomenclature of inorganic2 and Table 2: Multiplicative prefixes for simple/complicated entities polymer3 chemistry, with hyperlinks to original documents. An No. Simple Complicated No. Simple Complicated AND overall -
Singlet/Triplet State Anti/Aromaticity of Cyclopentadienylcation: Sensitivity to Substituent Effect
Article Singlet/Triplet State Anti/Aromaticity of CyclopentadienylCation: Sensitivity to Substituent Effect Milovan Stojanovi´c 1, Jovana Aleksi´c 1 and Marija Baranac-Stojanovi´c 2,* 1 Institute of Chemistry, Technology and Metallurgy, Center for Chemistry, University of Belgrade, Njegoševa 12, P.O. Box 173, 11000 Belgrade, Serbia; [email protected] (M.S.); [email protected] (J.A.) 2 Faculty of Chemistry, University of Belgrade, Studentski trg 12-16, P.O. Box 158, 11000 Belgrade, Serbia * Correspondence: [email protected]; Tel.: +381-11-3336741 Abstract: It is well known that singlet state aromaticity is quite insensitive to substituent effects, in the case of monosubstitution. In this work, we use density functional theory (DFT) calculations to examine the sensitivity of triplet state aromaticity to substituent effects. For this purpose, we chose the singlet state antiaromatic cyclopentadienyl cation, antiaromaticity of which reverses to triplet state aromaticity, conforming to Baird’s rule. The extent of (anti)aromaticity was evaluated by using structural (HOMA), magnetic (NICS), energetic (ISE), and electronic (EDDBp) criteria. We find that the extent of triplet state aromaticity of monosubstituted cyclopentadienyl cations is weaker than the singlet state aromaticity of benzene and is, thus, slightly more sensitive to substituent effects. As an addition to the existing literature data, we also discuss substituent effects on singlet state antiaromaticity of cyclopentadienyl cation. Citation: Stojanovi´c,M.; Aleksi´c,J.; Baranac-Stojanovi´c,M. Keywords: antiaromaticity; aromaticity; singlet state; triplet state; cyclopentadienyl cation; substituent Singlet/Triplet State effect Anti/Aromaticity of CyclopentadienylCation: Sensitivity to Substituent Effect. -
United States Patent Office
Patented Mar. 30, 1948 2,438,754 UNITED STATES PATENT OFFICE 2,438,754 COPPER, CONTAINING DSAZO, DYESTUFFS Adolf Krebser, Riehen, near Basel, and Werner Bossard, Basel, Switzerland, assignors to the firm J. R. Geigy A. G., Basel, Switzerland No Drawing. Application March 1, 1943, Serial : No. 477,630. In Switzerland April 28, 1942 1. Claims. (C. 260-148) 2 - It has been found that valuable new Copper For the dyestuffs of the type (a): 2-amino containing disazo dyestuffs are obtained by 1-hydroxy-, -methoxy- or -benzyloxybenzene coupling a diazotised amino Sulfonic acid of the 4-Sulfonic acid, 4- or 6-methyl-2-amino-1-hy benzene or naphthalene series, which contains, in droxy- or ethoxybenzene sulfonic acid, 4- or o-position to the amino group, a hydroxy group 5 6-chloro-2-amino-1-hydroxy- or -methoxyben or a Substituent convertible into a hydroxy group Zene Sulfonic acid, 4- or 6-nitro-2-amino-1-hy. by coppering, with a 1:3-dihydroxy-benzene, droxy- or -methoxybenzene sulfonic acid, then causing a diazonium compound which is 1-amino-2-hydroxynaphthalene-4-sulfonic acid, free from sulfonic acid groups to react with the 6-nitro-2-amino-1-hydroxynaphthalene - 4 -sul said monoazo dyestuff and after-treating the 0. fonic acid. so-obtained disazo dyestuff with copper-yielding For the dyestuffs of the type (b) and (c) : agents, with the condition that at least one of 3-amino-4-hydroxy-, -methoxy- or -chloro-1:1'- the diazo components is substituted by a phenyl diphenylsulfone-5- or -3'-sulfonic acid, 3-amino nucleus bound by a non-basic bridge. -
Cofactor Binding Protects Flavodoxin Against Oxidative Stress
Cofactor Binding Protects Flavodoxin against Oxidative Stress Simon Lindhoud1., Willy A. M. van den Berg1., Robert H. H. van den Heuvel2¤, Albert J. R. Heck2, Carlo P. M. van Mierlo1, Willem J. H. van Berkel1* 1 Laboratory of Biochemistry, Wageningen University, Wageningen, The Netherlands, 2 Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Utrecht, The Netherlands Abstract In organisms, various protective mechanisms against oxidative damaging of proteins exist. Here, we show that cofactor binding is among these mechanisms, because flavin mononucleotide (FMN) protects Azotobacter vinelandii flavodoxin against hydrogen peroxide-induced oxidation. We identify an oxidation sensitive cysteine residue in a functionally important loop close to the cofactor, i.e., Cys69. Oxidative stress causes dimerization of apoflavodoxin (i.e., flavodoxin without cofactor), and leads to consecutive formation of sulfinate and sulfonate states of Cys69. Use of 7-chloro-4- nitrobenzo-2-oxa-1,3-diazole (NBD-Cl) reveals that Cys69 modification to a sulfenic acid is a transient intermediate during oxidation. Dithiothreitol converts sulfenic acid and disulfide into thiols, whereas the sulfinate and sulfonate forms of Cys69 are irreversible with respect to this reagent. A variable fraction of Cys69 in freshly isolated flavodoxin is in the sulfenic acid state, but neither oxidation to sulfinic and sulfonic acid nor formation of intermolecular disulfides is observed under oxidising conditions. Furthermore, flavodoxin does not react appreciably with NBD-Cl. Besides its primary role as redox- active moiety, binding of flavin leads to considerably improved stability against protein unfolding and to strong protection against irreversible oxidation and other covalent thiol modifications. -
Inductive Effect
Dr Anju K. Gupta Associate Professor Department of Chemistry A.N. College, Patna Lecture note for B.Sc. (I) Subsidiary Inductive Effect If a covalent bond is formed between atoms having similar electronegativity, the bonding electrons will be shared equally between the two atoms. For example, in hydrogen molecule, the two hydrogen atoms have identical electronegativities. Therefore, the electron pair is shared equally between the two hydrogen atoms and so the molecular orbital (σ-bond) will be symmetrically distributed. Similarly, if we consider a chlorine molecule, the molecular orbital (σ- bond) formed between the two identical chlorine atoms is symmetrically distributed. This type of bond is called a non-polar covalent bond. However, if we consider a hydrogen chloride molecule, the electron pair is not equally shared between hydrogen and chlorine because chlorine has a greater electronegativity than hydrogen. Therefore, the electron pair shifts towards the more electronegative atom. This causes polarization in the bond in which the more electronegative atom chlorine acquires a partial positive charge. This type of bond in which unequal sharing of electron pair between two atoms of different electronegativities are involved is called a polar covalent bond. The atom which has a greater share of the paired electrons is given a symbol δ- and the atom with a smaller share is given a symbol δ+. Thus, a polar covalent bond can be represented as: 1 Dr Anju K. Gupta Associate Professor Department of Chemistry A.N. College, Patna Lecture note for B.Sc. (I) Subsidiary Consider a chain of carbon atoms such as C4—C3—C2—C1—X with an atom X at the terminal having higher electronegativity than carbon. -
Fischer Carbene Complexes in Organic Synthesis Ke Chen 1/31/2007
Baran Group Meeting Fischer Carbene Complexes in Organic Synthesis Ke Chen 1/31/2007 Ernst Otto Fischer (1918 - ) Other Types of Stabilized Carbenes: German inorganic chemist. Born in Munich Schrock carbene, named after Richard R. Schrock, is nucleophilic on November 10, 1918. Studied at Munich at the carbene carbon atom in an unpaired triplet state. Technical University and spent his career there. Became director of the inorganic Comparision of Fisher Carbene and Schrock carbene: chemistry institute in 1964. In the 1960s, discovered a metal alkylidene and alkylidyne complexes, referred to as Fischer carbenes and Fischer carbynes. Shared the Nobel Prize in Chemistry with Geoffery Wilkinson in 1973, for the pioneering work on the chemistry of organometallic compounds. Schrock carbenes are found with: Representatives: high oxidation states Isolation of first transition-metal carbene complex: CH early transition metals Ti(IV), Ta(V) 2 non pi-acceptor ligands Cp2Ta CH N Me LiMe Me 2 2 non pi-donor substituents CH3 (CO) W CO (CO)5W 5 (CO)5W A.B. Charette J. Am. Chem. Soc. 2001, 123, 11829. OMe O E. O. Fischer, A. Maasbol, Angew. Chem. Int. Ed., 1964, 3, 580. Persistent carbenes, isolated as a crystalline solid by Anthony J. Arduengo in 1991, can exist in the singlet state or the triplet state. Representative Fischer Carbenes: W(CO) Cr(CO) 5 5 Fe(CO)4 Mn(CO)2(MeCp) Co(CO)3SnPh3 Me OMe Ph Ph Ph NEt2 Ph OTiCp2Cl Me OMe Foiled carbenes were defined as "systems where stabilization is Fischer carbenes are found with : obtained by the inception of the facile reaction which is foiled by the impossibility of attaining the final product geometry". -
Products from Reactions of Carbon Nucleophiles and Carbon
14C synthesis strategies, Chem 315/316 / Beauchamp 1 Products from reactions of carbon nucleophiles and carbon electrophiles used in the 14C Game and our course: Carbon and hydrogen nucleophiles Ph R Ph Al H N R Li R (MgBr) P Li AlH R Cu Li Na CN RCC Na Ph 4 Li Carbon 2 H C R organolithium organolithium cyanide acetylides 2 ylid Na BH4 diisobutylaluminium lithium diisopropy- electrophiles cuprates (LAH) o reagents reagents Wittig reagents hydride (DIBAH) amide (LDA), -78 C H C Br 3 not useful not useful 2 RX coupling nitrilesalkynes not useful alkyls alkyls not useful methyl RX reaction R Br not useful not useful 2 RX coupling nitriles alkynes not useful alkyls alkyls not useful primary RX reaction R 2 RX coupling nitriles alkyls not useful E2 not useful alkyls not useful not useful reaction R Br secondary RX O 1o ROH 1o ROH 1o ROH 1o ROH not useful 1o ROH o not useful not useful 1o ROH 1 ROH ethylene oxide nitriles alkynes O o o o o o o 2 ROH 2 ROH 2 ROH 2 ROH 2o ROH 2 ROH 2 ROH not useful not useful E2, make nitriles alkynes allylic alcohols propylene oxide O o 3 ROH 3o ROH o 3o ROH o not useful o 3o ROH not useful E2, make 3 ROH 3 ROH 3 ROH allylic alcohols nitriles alkynes isobutylene oxide O o o specific methanol methanol C 1 ROH 1 ROH not used cyanohydrin 1o ROH not useful not useful in our course alkenes H H alkynes methanal O specific o enolate o o cyanohydrin o 1 ROH o C 2 ROH 2 ROH not useful 2 ROH alkenes 1 ROH not useful chemistry R H alkynes simple aldehydes O cyanohydrin o unless specific o enolate C 3 ROH 3o ROH o 2o ROH -
Organic Chemistry
Wisebridge Learning Systems Organic Chemistry Reaction Mechanisms Pocket-Book WLS www.wisebridgelearning.com © 2006 J S Wetzel LEARNING STRATEGIES CONTENTS ● The key to building intuition is to develop the habit ALKANES of asking how each particular mechanism reflects Thermal Cracking - Pyrolysis . 1 general principles. Look for the concepts behind Combustion . 1 the chemistry to make organic chemistry more co- Free Radical Halogenation. 2 herent and rewarding. ALKENES Electrophilic Addition of HX to Alkenes . 3 ● Acid Catalyzed Hydration of Alkenes . 4 Exothermic reactions tend to follow pathways Electrophilic Addition of Halogens to Alkenes . 5 where like charges can separate or where un- Halohydrin Formation . 6 like charges can come together. When reading Free Radical Addition of HX to Alkenes . 7 organic chemistry mechanisms, keep the elec- Catalytic Hydrogenation of Alkenes. 8 tronegativities of the elements and their valence Oxidation of Alkenes to Vicinal Diols. 9 electron configurations always in your mind. Try Oxidative Cleavage of Alkenes . 10 to nterpret electron movement in terms of energy Ozonolysis of Alkenes . 10 Allylic Halogenation . 11 to make the reactions easier to understand and Oxymercuration-Demercuration . 13 remember. Hydroboration of Alkenes . 14 ALKYNES ● For MCAT preparation, pay special attention to Electrophilic Addition of HX to Alkynes . 15 Hydration of Alkynes. 15 reactions where the product hinges on regio- Free Radical Addition of HX to Alkynes . 16 and stereo-selectivity and reactions involving Electrophilic Halogenation of Alkynes. 16 resonant intermediates, which are special favor- Hydroboration of Alkynes . 17 ites of the test-writers. Catalytic Hydrogenation of Alkynes. 17 Reduction of Alkynes with Alkali Metal/Ammonia . 18 Formation and Use of Acetylide Anion Nucleophiles . -
Chapter 7, Haloalkanes, Properties and Substitution Reactions of Haloalkanes Table of Contents 1
Chapter 7, Haloalkanes, Properties and Substitution Reactions of Haloalkanes Table of Contents 1. Alkyl Halides (Haloalkane) 2. Nucleophilic Substitution Reactions (SNX, X=1 or 2) 3. Nucleophiles (Acid-Base Chemistry, pka) 4. Leaving Groups (Acid-Base Chemistry, pka) 5. Kinetics of a Nucleophilic Substitution Reaction: An SN2 Reaction 6. A Mechanism for the SN2 Reaction 7. The Stereochemistry of SN2 Reactions 8. A Mechanism for the SN1 Reaction 9. Carbocations, SN1, E1 10. Stereochemistry of SN1 Reactions 11. Factors Affecting the Rates of SN1 and SN2 Reactions 12. --Eliminations, E1 and E2 13. E2 and E1 mechanisms and product predictions In this chapter we will consider: What groups can be replaced (i.e., substituted) or eliminated The various mechanisms by which such processes occur The conditions that can promote such reactions Alkyl Halides (Haloalkane) An alkyl halide has a halogen atom bonded to an sp3-hybridized (tetrahedral) carbon atom The carbon–chlorine and carbon– bromine bonds are polarized because the halogen is more electronegative than carbon The carbon-iodine bond do not have a per- manent dipole, the bond is easily polarizable Iodine is a good leaving group due to its polarizability, i.e. its ability to stabilize a charge due to its large atomic size Generally, a carbon-halogen bond is polar with a partial positive () charge on the carbon and partial negative () charge on the halogen C X X = Cl, Br, I Different Types of Organic Halides Alkyl halides (haloalkanes) sp3-hybridized Attached to Attached to Attached -
Chemical Kinetics HW1 (Kahn, 2010)
Chemical Kinetics HW1 (Kahn, 2010) Question 1. (6 pts) A reaction with stoichiometry A = P + 2Q was studied by monitoring the concentration of the reactant A as a function of time for eighteen minutes. The concentration determination method had a maximum error of 6 M. The following concentration profile was observed: Time (min) Conc (mM) 1 0.9850 2 0.8571 3 0.7482 4 0.6549 5 0.5885 6 0.5183 7 0.4667 8 0.4281 9 0.3864 10 0.3557 11 0.3259 12 0.3037 13 0.2706 14 0.2486 15 0.2355 16 0.2188 17 0.2111 18 0.1930 Determine the reaction order and calculate the rate constant for decomposition of A. What can be said about the mechanism or molecularity of this reaction? Question 2. (4 pts) Solve problem 2 on pg 31 in your textbook (House) using both linear and non-linear regression. Provide standard errors for the rate constant and half-life based on linear and non-linear fits. Below is the data set for your convenience: dataA = {{0, 0.5}, {10, 0.443}, {20,0.395}, {30,0.348}, {40,0.310}, {50,0.274}, {60,0.24}, {70,0.212}, {80,0.190}, {90,0.171}, {100,0.164}} Question 3. (3 pts) Solve problem 3 on pg 32 in your textbook (House). Question 4. (7 pts) The authors of the paper “Microsecond Folding of the Cold Shock Protein Measured by a Pressure-Jump Technique” suggest that the activated state of folding of CspB follows Hammond- type behavior. -
Copyrighted Material
Index Abbreviations receptor sites 202, 211 weak 122 amino acids, Table 500–1 muscarinic 413 weak, pH calculation 147–8 nucleic acids 551 nicotinic 413 Acid–base nucleotides, Table 551 as quaternary ammonium salt 202 catalysis, enzymes 516 peptides and proteins 504 Acetylcholinesterase equilibria 121 phosphates and diphosphates 277 enzyme mechanism 519–21 interactions, predicting 155–7 structural, Table 14 hydrolysis of acetylcholine 279 Acidic reagents, Table 157 ACE (angiotensin-converting enzyme) inhibitors 279 Acidity enzyme action 532 Acetyl-CoA carboxylase, in fatty acid acidity constant 122 inhibitors 532 biosynthesis 595 bond energy effects 125 Acetal Acetyl-CoA (acetyl coenzyme A) definition 121 in etoposide 233 as acylating agent 262 electronegativity effects 125 formation 229 carboxylation to malonyl-CoA 595, hybridization effects 128 polysaccharides as polyacetals 232 609 inductive effects 125–7 as protecting group 230 Claisen reaction 381 influence of electronic and structural Acetal and ketal enolate anions 373 features 125–34 cyclic, as protecting groups 481 in Krebs cycle 585 and leaving groups, Table 189 groups in sucrose 231 from β-oxidation of fatty acids 388 pKa values 122–5 Acetaldehyde, basicity 139 as thioester 262, 373 resonance / delocalization effects 129–34 Acetamide, basicity 139 Acetylene, bonding molecular orbitals 31 Acidity (compounds) Acetaminophen, see paracetamol Acetylenes, acidity 128 acetone 130 Acetoacetyl-CoA, biosynthesis from N-Acetylgalactosamine, in blood group acetonitrile 365 acetyl-CoA 392