Volatile Organic Compounds from Orchids: from Synthesis and Function to Gene Regulation
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Scent As a Medium for Design: an Experimental Design Inquiry
Scent as a Medium for Design: An Experimental Design Inquiry A Thesis Presented in Partial Fulfillment of the Requirements for The Degree Master of Fine Arts in the Graduate School of The Ohio State University By Alessandra Cerqueira Mattos, MBA Graduate Program in Industrial, Interior and Visual Communication Design The Ohio State University 2011 Master’s Examination Committee Professors Peter Chan, Advisor, PhD Elizabeth B.-N. Sanders, PhD Carolina Gill Copyright by Alessandra Cerqueira Mattos © 2011 All rights reserved Abstract The roles of Designers and Researchers are blending together and each one is trying to work in and improve on the other’s domain. This represents an important shift for both fields, but it is fundamental that the next steps are taken by studying and acquiring more knowledge across both fields. Thus, this study aims to adapt Experimental Design as a method to be used by Designers. The use of experiments as a method for Design Research is a relatively unexplored domain within the field of Design that has implications for positive and useful applications. With the application of rigorous methods of experimental study, results can be generalized to broader situations. Scientific methods address concern of bias, replication, and disclosure of the problem and findings. Experimentally-based findings will be well respected not only by Designers, but also by the Scientific community. The experiment consisted of interviews with ninety people who were asked to associate the presented smells with words. Quantitative analysis was done using statistical tests to understand whether people’s responses did or did not occur by ii chance. -
Guide to the Flora of the Carolinas, Virginia, and Georgia, Working Draft of 17 March 2004 -- LILIACEAE
Guide to the Flora of the Carolinas, Virginia, and Georgia, Working Draft of 17 March 2004 -- LILIACEAE LILIACEAE de Jussieu 1789 (Lily Family) (also see AGAVACEAE, ALLIACEAE, ALSTROEMERIACEAE, AMARYLLIDACEAE, ASPARAGACEAE, COLCHICACEAE, HEMEROCALLIDACEAE, HOSTACEAE, HYACINTHACEAE, HYPOXIDACEAE, MELANTHIACEAE, NARTHECIACEAE, RUSCACEAE, SMILACACEAE, THEMIDACEAE, TOFIELDIACEAE) As here interpreted narrowly, the Liliaceae constitutes about 11 genera and 550 species, of the Northern Hemisphere. There has been much recent investigation and re-interpretation of evidence regarding the upper-level taxonomy of the Liliales, with strong suggestions that the broad Liliaceae recognized by Cronquist (1981) is artificial and polyphyletic. Cronquist (1993) himself concurs, at least to a degree: "we still await a comprehensive reorganization of the lilies into several families more comparable to other recognized families of angiosperms." Dahlgren & Clifford (1982) and Dahlgren, Clifford, & Yeo (1985) synthesized an early phase in the modern revolution of monocot taxonomy. Since then, additional research, especially molecular (Duvall et al. 1993, Chase et al. 1993, Bogler & Simpson 1995, and many others), has strongly validated the general lines (and many details) of Dahlgren's arrangement. The most recent synthesis (Kubitzki 1998a) is followed as the basis for familial and generic taxonomy of the lilies and their relatives (see summary below). References: Angiosperm Phylogeny Group (1998, 2003); Tamura in Kubitzki (1998a). Our “liliaceous” genera (members of orders placed in the Lilianae) are therefore divided as shown below, largely following Kubitzki (1998a) and some more recent molecular analyses. ALISMATALES TOFIELDIACEAE: Pleea, Tofieldia. LILIALES ALSTROEMERIACEAE: Alstroemeria COLCHICACEAE: Colchicum, Uvularia. LILIACEAE: Clintonia, Erythronium, Lilium, Medeola, Prosartes, Streptopus, Tricyrtis, Tulipa. MELANTHIACEAE: Amianthium, Anticlea, Chamaelirium, Helonias, Melanthium, Schoenocaulon, Stenanthium, Veratrum, Toxicoscordion, Trillium, Xerophyllum, Zigadenus. -
An Integrated Orchid Functional Genomics Database
Orchidstra: An Integrated Orchid Functional Genomics Database Special Focus Issue Chun-lin Su1,3, Ya-Ting Chao1,3, Shao-Hua Yen1, Chun-Yi Chen1, Wan-Chieh Chen1, Yao-Chien Alex Chang2 and Ming-Che Shih1,* 1Agricultural Biotechnology Research Center, Academia Sinica, Taipei 11529, Taiwan 2Department of Horticulture and Landscape Architecture, National Taiwan University, Taipei 10617, Taiwan. 3These authors contributed equally to this work. *Corresponding author: E-mail: [email protected]; Fax, +886-2-26515693. (Received November 9, 2012; Accepted January 5, 2013) A specialized orchid database, named Orchidstra (URL: Abbreviations: BLAST, basic local alignment search tool; – Databases http://orchidstra.abrc.sinica.edu.tw), has been constructed CAM, crassulacean acid metabolism; EIF5A, eukaryotic trans- to collect, annotate and share genomic information for lation initiation factor 5A; EST, expressed sequence tag; GO, orchid functional genomics studies. The Orchidaceae is a Gene Ontology; KEGG, Kyoto Encyclopedia of Genes and large family of Angiosperms that exhibits extraordinary bio- Genomes; miRNA, microRNA; NGS, next-generation sequen- diversity in terms of both the number of species and their cing; SRA, sequence read archive; TSA, transcriptome distribution worldwide. Orchids exhibit many unique biolo- shotgun assembly. gical features; however, investigation of these traits is cur- rently constrained due to the limited availability of genomic information. Transcriptome information for five orchid spe- Introduction cies and one commercial hybrid has been included in the Orchidaceae, the orchid family, diverged from the Liliaceae Orchidstra database. Altogether, these comprise >380,000 and Amaryllidaceae, is the largest family of Angiosperms, with non-redundant orchid transcript sequences, of which >800 genera and >25,000 species. -
NOPES Newsletter 5 20
Newsletter of the Native Orchid Preservation and Education Society nativeorchidpreservationeducationsociety.com May 2020 Letter from the President Hello everyone, We were finally able to have an orchid hike. Ten of us met at Shawnee Backpacking Trail. Maintaining social distancing and wearing our masks, we were able to find Cypripedium acaule, the Pink Lady's-Slipper, Galearis spectabilis, the Showy Orchis blooming and Cypripedium parviflorum var. pubescens the Large Yellow Lady's-Slipper in bud. We will be organizing other hikes in the future and Jeanne is working on Zoom meetings for us. Check website for updates. Hope to see everyone soon! Galearis spectabilis, Teresa Huesman Showy Orchis, Shawnee State Forest In Bloom in May and June in Ohio and Kentucky Corallorhiza wisteriana Galearis spectabilis Cypripedium acaule Cypripedium kentuckiense Aplectrum hyemale Putty Cleistes bifaria Wister's Coral-Root Showy Orchid Pink Lady’s-Slipper Southern Lady’s Slipper Root Spreading Pogonia Cypripedium candidum Platanthera leucophaea Isotria verticillata Large Cypripedium parviflorum Pogonia ophioglossoides Neottia cordata Heart- Small White Lady’s- Eastern Prairie Fringed Whorled Pogonia var. pubescens Large Rose Pogonia Leaved Twayblade Slipper Orchid Yellow Lady’s-Slipper Liparis loeselii Platanthera lacera Liparis liliifolia Cypripedium reginae Spiranthes lucida Shining Calopogon tuberosus Loesel's Twayblade Ragged Fringed Orchid Large Twayblade Showy Lady’s-Slipper Ladies'-Tresses Grass Pink 1 Shawnee State Park Field Trip – May 2, 2020 - Jan Yates The more I’ve hiked Shawnee State Forest, the more it seems like we orchid enthusiasts have a code that would baffle many people. Mention to a colleague that you’re hiking Shawnee and they’ll ask ‘3 and 6?’ or ‘1 and 2?’ For other friends who are regular hikers/outdoors people/gardeners, I find myself explaining that these are the forest roads so rich in native orchids that you can virtually step out of the car and find them on the roadside. -
The Orchids of the Isle of Formentera
Jour. Eur. Orch. 37 (4): 501 – 528. 2005. Barbara Klahr Translated by Dr.Eckhard Kiehl The Orchids of the Isle of Formentera Keywords Orchidaceae; Aceras anthropophorum, Barlia robertiana, Gennaria diphylla, Neotinea maculata, Ophrys bombyliflora, O. dyris, O. cf. fabrella, O. fusca, O. speculum, O. tenthredinifera, Orchis collina, O. fragrans, Serapias parviflora; Formentera, Pityuses, Balearic Islands; distribution; ecology; endangerment; protection. Summary Klahr, B. (2005): The orchids of Formentera.- Jour. Eur. Orch. 37 (4): 501 XXX. A short review of history and geography of Formentera is given; aspects of flora and fauna of a south mediterranean Island, survival of plants in a half-arid zone without any wells or fresh ground water. As the most southern Island of the Pityuses, Formentera belongs climatically more to Africa than to Europe. It is a very rocky eroded Island after having had a long period without agriculture. Endemic species in flora and fauna are mentioned. Wild Orchids are growing on this small Island mainly in the higher regions of the plateau La Mola and Cap de Barbaria. There is not as much pastureland as in other mediterranean countries. Ophrys and Orchis predominate.. Most areas of Formentera were explored during the whole year, also difficult to reach regions like “Torrentes” (Canyons). The period of my observation is 2002 - 2005. The Orchids are endangered as a result of the reinforced agriculture and chemical fertilizing, subsidized by the EU, and by increasing building activities. Centuries fallow agricultural land that makes very interesting biotopes will be destroyed. The orchids of Formentera are bibliographically quoted; the results are to be supplemented with four new found species and new sites. -
Molecularphylogeneticsof Phalaenopsis(Orchidaceae)
The JapaneseSocietyJapanese Society for Plant Systematics ISSN 1346-7565 Acta Phytotax. GeoboL 56 (2): 14]-161 (200S)・ Molecular Phylogenetics of Phalaenopsis (Orchidaceae)and allied Genera: Re-evaluation of Generic Concepts TOMOHISA YUKAWAi, KOICHI KITA2, TAKASHI HANDA2, TOPIK HIDAYAT3 and MOTOMHTo3 i71sukuba 21hstitute Botanical Garcien, Nlational Scienee Mtiseum, Amakuho, Tyuketba, 305-OO05. Jopan; of 3Graduate Agricultnre andforestn)). Uhivensity qf'Tgukuba, fennodai, 71yukuba, 305-857Z Japan; Schoot ofArts and Seience, Uhivensity of7bdy,o, Kbmaba, 7bkyo, J53-8902, JZu)an, Molecular phylogenetic analyscs were performed using data sets derived from DNA sequences ofthe plastid genome (matK and trnK introns) and the nuelear genome (rDNA ITS) in an examination ofrela- tionships of all sections ofPhataenqpsis and closely related gcnera. The fo11owing insights were pro- vided: (1) The genera Lesliea and IVbthodoritis are nested within Phalaenopsis, (2) Phalaenopsis subgenus Aphyilae and section EsmeJ'aldd, often treated as thc independent genera Kirrgidium and Doritis respectively, are also nested within Phalaenqpsis. (3) Two subgenera of Phalaenqpsis, namely, Phalaenopsis and 1larishianae, are not monophyletic. (4) Phalaenopsis sections Deliciosae, SZautqglottis, Amboinenses and Zehrinae are not monophyletic. (5) lnconsistencies bctween the plastid and nuclear lineages indicate a hybrid origin ofPhalaenopsis minus and Phalaenopsis phitmpinensis. (6) In light of these findings, and to accommodate phylogenetic integrity and stability in nomenclature, we adopt a broadly defincd Doritis characterized by the possession of fbur pollinia, an explicit character state. Key words: Doritis,introgression, ITS, mati(l moleculag Orchidaceae, Ahalaenopsis, phylogcnctics, tttnK Phakzenopsis Blume is an orchid genus to which 62 tion ofthe genus has been thoroughly reviewed by species are currently assigned (Christenson 2001). -
PC22 Doc. 22.1 Annex (In English Only / Únicamente En Inglés / Seulement En Anglais)
Original language: English PC22 Doc. 22.1 Annex (in English only / únicamente en inglés / seulement en anglais) Quick scan of Orchidaceae species in European commerce as components of cosmetic, food and medicinal products Prepared by Josef A. Brinckmann Sebastopol, California, 95472 USA Commissioned by Federal Food Safety and Veterinary Office FSVO CITES Management Authorithy of Switzerland and Lichtenstein 2014 PC22 Doc 22.1 – p. 1 Contents Abbreviations and Acronyms ........................................................................................................................ 7 Executive Summary ...................................................................................................................................... 8 Information about the Databases Used ...................................................................................................... 11 1. Anoectochilus formosanus .................................................................................................................. 13 1.1. Countries of origin ................................................................................................................. 13 1.2. Commercially traded forms ................................................................................................... 13 1.2.1. Anoectochilus Formosanus Cell Culture Extract (CosIng) ............................................ 13 1.2.2. Anoectochilus Formosanus Extract (CosIng) ................................................................ 13 1.3. Selected finished -
Nuclear DNA Contents of Phalaenopsis Sp. and Doritis Pulcherrima
J. AMER. SOC. HORT. SCI. 126(2):195–199. 2001. Nuclear DNA Contents of Phalaenopsis sp. and Doritis pulcherrima Sandy Lin and Hsiao-Ching Lee Department of Life Science, National Tsing Hua University, Hsinchu, 30043, Taiwan, Republic of China Wen-Huei Chen Department of Horticulture, Taiwan Sugar Research Institute, Tainan, 701, Taiwan, Republic of China Chi-Chang Chen and Yen-Yu Kao Department of Botany, National Taiwan University, Taipei, 10764, Taiwan, Republic of China Yan-Ming Fu and Yao-Huang Chen Department of Horticulture, Taiwan Sugar Research Institute, Tainan, 701, Taiwan, Republic of China Tsai-Yun Lin1 Department of Life Science, National Tsing Hua University, Hsinchu, 30043, Taiwan, Republic of China ADDITIONAL INDEX WORDS. Orchidaceae, endoreduplication, flow cytometry, genome size ABSTRACT. Nuclear DNA contents were estimated by flow cytometry in 18 Phalaenopsis Blume species and Doritis pulcherrima Lindl. DNA amounts differed 6.07-fold, from 2.74 pg/diploid nuclear DNA content (2C) in P. sanderiana Rchb.f. to 16.61 pg/2C in P. parishii Rchb.f. Nuclear DNA contents of P. aphrodite Rchb.f. clones, W01-38 (2n = 2x = 38), W01-41 (2n = 3x = 57), and W01-22 (2n = 4x = 76), displayed a linear relationship with their chromosome numbers, indicating the accuracy of flow cytometry. Our results also suggest that the 2C-values of the Phalaenopsis sp. correlate with their chromosome sizes. The comparative analyses of DNA contents may provide information to molecular geneticists and systematists for genome analysis in Phalaenopsis. Endoreduplication was found in various tissues of P. equestris at different levels. The highest degree of endoreduplication in P. -
Anthurium Fragrance: Genetic and Biochemical Studies
ANTHURIUM FRAGRANCE: GENETIC AND BIOCHEMICAL STUDIES A DISSERTATION SUBMITTED TO THE GRADUATE DIVISION OF THE UNIVERSITY OF HAWAII IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY IN HORTICULTURE DECEMBER 1997 By Nuttha Kuanprasert Dissertation Committee: Adelheid R. Kuehnle, Chairperson Chung-Shih Tang Catherine Cavaletto Richard Criley Richard M. Manshardt David T. Webb We certify that we have read this dissertation and that, in our opinion, it is satisfactory in scope and quality as a dissertation for the degree of Doctor of Philosophy in Horticulture. DISSERTATION COMMITTEE 1^-hXLu.AA fl 16^1—^ Chairperson M HL > L x6 © Copyright 1997 by Nuttha Kuanprasert All Rights Reserved iii ACKNOWLEDGEMENTS I am very grateful to my advisor, Dr. Adelheid R. Kuehnle for her valuable advice and support throughout the dissertation process and also for her assistance in editing my manuscript. I would like to thank my committee members: Dr. C. S. Tang for his guidance in chemical analysis, Ms. Catherine Cavaletto for her instruction in fragrance evaluation. Dr. Richard Criley for providing useful and relevant articles and abstracts. Dr. Richard M. Manshardt for his support and comments, and Dr. David T. Webb for his long-term assistance in histological study. I extend my sincere thanks to Emeritus Professor Haruyuki Kamemoto. I truly enjoyed the numerous hours we spent working in the nursery. Through this experience, I gained invaluable knowledge about general horticultural techniques and philosophy of life. 1 would like to extend my gratitude to Dr. Teresita Amore for her kind assistance and suggestions, Ms. Nellie Sugii, and lab members for their friendship and encouragement. -
Phalaenopsis[I]
A peer-reviewed version of this preprint was published in PeerJ on 12 May 2016. View the peer-reviewed version (peerj.com/articles/2017), which is the preferred citable publication unless you specifically need to cite this preprint. Huang J, Lin C, Cheng T, Huang Y, Tsai Y, Cheng S, Chen Y, Lee C, Chung W, Chang BC, Chin S, Lee C, Chen F. 2016. The genome and transcriptome of Phalaenopsis yield insights into floral organ development and flowering regulation. PeerJ 4:e2017 https://doi.org/10.7717/peerj.2017 The genome and transcriptome of the Phalaenopsis yield insights into floral organ development and flowering regulation Jian-Zhi Huang, Chih-Peng Lin, Ting-Chi Cheng, Ya-Wen Huang, Yi-Jung Tsai, Shu-Yun Cheng, Yi-Wen Chen, Chueh-Pai Lee, Wan- Chia Chung, Bill Chia-Han Chang, Shih-Wen Chin, Chen-Yu Lee, Fure-Chyi Chen Phalaenopsis orchid is an important potted flower with high economic value around the world. We report the 3.1 Gb draft genome assembly of an important winter flowering Phalaenopsis ‘KHM190’ cultivar. We generated 89.5 Gb RNA-seq and 113 million sRNA-seq reads to use these data to identify 41,153 protein-coding genes and 188 miRNA families. We also generated a draft genome for Phalaenopsis pulcherrima ‘B8802’, a summer flowering species, via resequencing. Comparison of genome data between the two Phalaenopsis cultivars allowed the identification of 691,532 single-nucleotide polymorphisms. In this study, we reveal the key role of PhAGL6b in the regulation of flower organ development involves alternative splicing. We also show gibberellin pathways that regulate the expression of genes control flowering time during the stage in reproductive phase change induced by cool temperature. -
Floral Scent and Nectar Sugar Composition of Temnadenia Odorifera (Apocynoideae, Apocynaceae)
http://dx.doi.org/10.21577/0103-5053.20180188 J. Braz. Chem. Soc., Vol. 30, No. 2, 388-397, 2019 Printed in Brazil - ©2019 Sociedade Brasileira de Química Article Floral Scent and Nectar Sugar Composition of Temnadenia odorifera (Apocynoideae, Apocynaceae) Rafael F. Silva, a,b Natália A. B. Tinoco,a Anna Tsukui,a Cristiana Koschnitzke,c Inara C. Silva-Batista,c Claudia M. Rezendea and Humberto R. Bizzo *,b,d aLaboratório de Análise de Aromas, Instituto de Química, Universidade Federal do Rio de Janeiro, 21941-909 Rio de Janeiro-RJ, Brazil bInstituto de Pesquisas de Produtos Naturais, Universidade Federal do Rio de Janeiro, 21941-902 Rio de Janeiro-RJ, Brazil cDepartamento de Botânica, Museu Nacional, Universidade Federal do Rio de Janeiro, 20940-040 Rio de Janeiro-RJ, Brazil dEmbrapa Agroindústria de Alimentos, Av. das Américas, 29501, 23020-470 Rio de Janeiro-RJ, Brazil Temnadenia odorifera is an endemic species from the Brazilian Atlantic Forest. This study was developed in order to identify the volatile compounds emitted by the living flowers and nectar, to evaluate the temporal pattern of scent emission, and the sugars composition of its nectar. Analyses of the flower scent by dynamic headspace in vivo, of nectar sugar composition and studies on floral biology were performed. Twenty-three volatile compounds were identified in the flowers scent. The total amount of odor emitted by flowers varied significantly throughout anthesis, ranging from 10232.7 ng g-1 (9 to 12 h) to 620.2 ng g-1 (15 to 18 h). 2-Phenylethanol and (E)-cinnamyl alcohol were the major compounds. -
Independent Degradation in Genes of the Plastid Ndh Gene Family in Species of the Orchid Genus Cymbidium (Orchidaceae; Epidendroideae)
RESEARCH ARTICLE Independent degradation in genes of the plastid ndh gene family in species of the orchid genus Cymbidium (Orchidaceae; Epidendroideae) Hyoung Tae Kim1, Mark W. Chase2* 1 College of Agriculture and Life Sciences, Kyungpook University, Daegu, Korea, 2 Jodrell Laboratory, Royal a1111111111 Botanic Gardens, Kew, Richmond, Surrey, United Kingdom a1111111111 * [email protected] a1111111111 a1111111111 a1111111111 Abstract In this paper, we compare ndh genes in the plastid genome of many Cymbidium species and three closely related taxa in Orchidaceae looking for evidence of ndh gene degradation. OPEN ACCESS Among the 11 ndh genes, there were frequently large deletions in directly repeated or AT- Citation: Kim HT, Chase MW (2017) Independent rich regions. Variation in these degraded ndh genes occurs between individual plants, degradation in genes of the plastid ndh gene family apparently at population levels in these Cymbidium species. It is likely that ndh gene trans- in species of the orchid genus Cymbidium fers from the plastome to mitochondrial genome (chondriome) occurred independently in (Orchidaceae; Epidendroideae). PLoS ONE 12(11): e0187318. https://doi.org/10.1371/journal. Orchidaceae and that ndh genes in the chondriome were also relatively recently transferred pone.0187318 between distantly related species in Orchidaceae. Four variants of the ycf1-rpl32 region, Editor: Zhong-Jian Liu, The National Orchid which normally includes the ndhF genes in the plastome, were identified, and some Cymbid- Conservation Center of China; The Orchid ium species contained at least two copies of that region in their organellar genomes. The Conservation & Research Center of Shenzhen, four ycf1-rpl32 variants seem to have a clear pattern of close relationships.