Microbial Biopesticides for Control of Invertebrates: Progress from New Zealand
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Priscila Jane Romano De Oliveira Gonçalves Caracterização E
Priscila Jane Romano de Oliveira Gonçalves Caracterização e avaliação do papel do gene wcbE de Burkholderia seminalis linhagem TC3.4.2R3 na interação microbiana. Tese apresentada ao Programa de Pós- Graduação em Microbiologia do Instituto de Ciências Biomédicas da Universidade de São Paulo, para obtenção do título de Doutora em Microbiologia. Área de concentração: Microbiologia Orientador: Prof. Dr. Welington Luiz de Araújo Versão original. São Paulo 2017 Priscila Jane Romano de Oliveira Gonçalves Characterization and evaluation of the role of wcbE gene from Burkholderia seminalis strain TC3.4.2R3 in microbial interaction. Thesis presented to the Microbiology Department of Instituto de Ciências Biomédicas from Universidade de São Paulo, as requirement for the degree of Doctor of Philosophy in Microbiology. Concentration area: Microbiology Supervisor: Prof. Dr. Welington Luiz de Araújo Original version. São Paulo 2017 RESUMO GONÇALVES, P. J. R. O. Caracterização e avaliação do papel do gene wcbE de Burkholderia seminalis linhagem TC3.4.2R3 na interação microbiana. 2017. 149 f. Tese (Doutorado em Microbiologia) – Instituto de Ciências Biomédicas, Universidade de São Paulo, São Paulo, 2017. Burkholderia seminalis tem sido encontrada como um micro-organismo não patogênico, promotor de crescimento vegetal, nodulador de raízes, biorremediador, agente de biocontrole e, também, como organismo patogênico em algumas plantas e pacientes com fibrose cística. O gene wcbE codifica uma glicosiltransferase e pertence ao cluster wcb, que está relacionado à síntese de cápsula e interações ambientais. O objetivo deste trabalho foi investigar o papel do gene wcbE e da temperatura nas interações microbianas de B. seminalis TC3.4.2R3. A produção de biofilme, EPS e compostos antifúngicos foi maior a 28 ºC. -
Table S5. the Information of the Bacteria Annotated in the Soil Community at Species Level
Table S5. The information of the bacteria annotated in the soil community at species level No. Phylum Class Order Family Genus Species The number of contigs Abundance(%) 1 Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus 1749 5.145782459 2 Bacteroidetes Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter sedentarius 1538 4.52499338 3 Gemmatimonadetes Gemmatimonadetes Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonesis 1020 3.000970902 4 Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas indica 797 2.344876284 5 Firmicutes Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus piscium 542 1.594633558 6 Actinobacteria Thermoleophilia Solirubrobacterales Conexibacteraceae Conexibacter Conexibacter woesei 471 1.385742446 7 Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas taxi 430 1.265115184 8 Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas wittichii 388 1.141545794 9 Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. FARSPH 298 0.876754244 10 Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sorangium cellulosum 260 0.764953367 11 Proteobacteria Deltaproteobacteria Myxococcales Polyangiaceae Sorangium Sphingomonas sp. Cra20 260 0.764953367 12 Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas panacis 252 0.741416341 -
Characterisation of the Type VI Secretion System in Pantoea Ananatis
Characterisation of the type VI secretion system in Pantoea ananatis BY Shyntum Divine Yufetar Submitted in partial fulfilment of the requirements for the degree Doctor of Philosophy In the Faculty of Natural and Agricultural Sciences, Department of Microbiology and Plant Pathology, University of Pretoria, Pretoria, South Africa February 2014 Approved by supervisory committee Teresa A. Coutinho, Ph.D. Lucy N. Moleleki, Ph.D. Stephanus A. Venter, Ph.D. Ian K. Toth, Ph.D. i DECLARATION I declare that the thesis “Characterisation of the type VI secretion system in Pantoea ananatis”, which I hereby submit for the Doctor of Philosophy degree at the University of Pretoria, is my own work and has not previously been submitted by me for a degree at this or any other tertiary institution. SIGNATURE:………………………………………….. DATE:......……….. Shyntum Divine Yufetar i ACKNOWLEDGEMENTS I am deeply grateful to God for having taken me this far in my life. I would want to acknowledge the invaluable supervision of Prof. TA Coutinho, Dr. Lucy Moleleki, Prof. SN Venter and Dr. Ian Toth who guided me professionally. Many thanks also to Prof. Jacques Theron for your invaluable technical assistance, most of all thank you for helping me think outside the box. Many thanks to my siblings and parents for being there for me all these years. Thanks also to Mr John Menjo and his wife Ruth Menjo for providing me an escape from the rigors of academic work during the weekends and holidays. Special thanks to Ms Vimbai Siziba for all her support, you stood by me, listened and supported me through what I consider the hardest part of my PhD studies. -
Hemiptera: Adelgidae)
The ISME Journal (2012) 6, 384–396 & 2012 International Society for Microbial Ecology All rights reserved 1751-7362/12 www.nature.com/ismej ORIGINAL ARTICLE Bacteriocyte-associated gammaproteobacterial symbionts of the Adelges nordmannianae/piceae complex (Hemiptera: Adelgidae) Elena R Toenshoff1, Thomas Penz1, Thomas Narzt2, Astrid Collingro1, Stephan Schmitz-Esser1,3, Stefan Pfeiffer1, Waltraud Klepal2, Michael Wagner1, Thomas Weinmaier4, Thomas Rattei4 and Matthias Horn1 1Department of Microbial Ecology, University of Vienna, Vienna, Austria; 2Core Facility, Cell Imaging and Ultrastructure Research, University of Vienna, Vienna, Austria; 3Department of Veterinary Public Health and Food Science, Institute for Milk Hygiene, Milk Technology and Food Science, University of Veterinary Medicine Vienna, Vienna, Austria and 4Department of Computational Systems Biology, University of Vienna, Vienna, Austria Adelgids (Insecta: Hemiptera: Adelgidae) are known as severe pests of various conifers in North America, Canada, Europe and Asia. Here, we present the first molecular identification of bacteriocyte-associated symbionts in these plant sap-sucking insects. Three geographically distant populations of members of the Adelges nordmannianae/piceae complex, identified based on coI and ef1alpha gene sequences, were investigated. Electron and light microscopy revealed two morphologically different endosymbionts, coccoid or polymorphic, which are located in distinct bacteriocytes. Phylogenetic analyses of their 16S and 23S rRNA gene sequences assigned both symbionts to novel lineages within the Gammaproteobacteria sharing o92% 16S rRNA sequence similarity with each other and showing no close relationship with known symbionts of insects. Their identity and intracellular location were confirmed by fluorescence in situ hybridization, and the names ‘Candidatus Steffania adelgidicola’ and ‘Candidatus Ecksteinia adelgidicola’ are proposed for tentative classification. -
UNIVERSITY of CALIFORNIA Santa Barbara Delivery and Activity Of
UNIVERSITY OF CALIFORNIA Santa Barbara Delivery and activity of toxic effector domains from contact-dependent growth inhibition systems in Escherichia coli A dissertation submitted in partial satisfaction of the requirements for the degree Doctor of Philosophy in Molecular, Cellular, and Developmental Biology by Julia Laura Elizabeth Willett Committee in charge: Professor Christopher S. Hayes, Chair Professor Anthony de Tomaso Professor David Low Professor Denise Montell June 2016 The dissertation of Julia Laura Elizabeth Willett is approved. _____________________________________________ Anthony de Tomaso _____________________________________________ David Low _____________________________________________ Denise Montell _____________________________________________ Christopher S. Hayes, Committee Chair February 2016 Delivery and activity of toxic effector domains from contact-dependent growth inhibition systems in Escherichia coli Copyright © 2016 by Julia Laura Elizabeth Willett iii To Jason iv ACKNOWLEDGEMENTS I would first and foremost like to thank Chris for being a great advisor and for allowing me to investigate a variety of engrossing research questions throughout my graduate work in his lab. I’m appreciative of all the opportunities that I have had to grow as a scientist and writer, present my research at conferences, and interact with incredible seminar speakers and colleagues. His enthusiasm for science and research is contagious. A number of collaborations made this work possible. I’m extremely grateful for our close (both literally and figuratively) collaboration with David Low and his research group, particularly former members Stephanie Aoki, Sanna Koskiniemi, Travis Smith, and Julia Webb. David is a tremendous scientist with whom scientific conversations are always inspiring. I am also grateful for our collaboration with Robert Morse and Celia Goulding at UC Irvine, as their crystallography expertise has provided invaluable insight into the structural world of CDI. -
Desfosses Et Al. Nat Microbiol
Atomic structures of an entire contractile injection system in both the extended and contracted states Ambroise Desfosses, H Venugopal, T Joshi, Jan Felix, M Jessop, H Jeong, J Hyun, J. Bernard Heymann, Mark R. H. Hurst, Irina Gutsche, et al. To cite this version: Ambroise Desfosses, H Venugopal, T Joshi, Jan Felix, M Jessop, et al.. Atomic structures of an entire contractile injection system in both the extended and contracted states. Nature Microbiology, Nature Publishing Group, 2019, 4 (11), pp.1885-1894. 10.1038/s41564-019-0530-6. hal-02417597 HAL Id: hal-02417597 https://hal.univ-grenoble-alpes.fr/hal-02417597 Submitted on 24 Nov 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Europe PMC Funders Group Author Manuscript Nat Microbiol. Author manuscript; available in PMC 2020 February 05. Published in final edited form as: Nat Microbiol. 2019 November 01; 4(11): 1885–1894. doi:10.1038/s41564-019-0530-6. Europe PMC Funders Author Manuscripts Atomic structures of an entire contractile injection system in both the extended and contracted states Ambroise Desfosses1,2, Hariprasad Venugopal1,3, Tapan Joshi1, Jan Felix, Matthew Jessop1,2, Hyengseop Jeong4, Jaekyung Hyun4,5, J. -
Epidemiology and Comparative Analysis of Yersinia in Ireland Author(S) Ringwood, Tamara Publication Date 2013 Original Citation Ringwood, T
UCC Library and UCC researchers have made this item openly available. Please let us know how this has helped you. Thanks! Title Epidemiology and comparative analysis of Yersinia in Ireland Author(s) Ringwood, Tamara Publication date 2013 Original citation Ringwood, T. 2013. Epidemiology and comparative analysis of Yersinia in Ireland. PhD Thesis, University College Cork. Type of publication Doctoral thesis Rights © 2013, Tamara Ringwood http://creativecommons.org/licenses/by-nc-nd/3.0/ Item downloaded http://hdl.handle.net/10468/1294 from Downloaded on 2021-10-07T12:07:10Z Epidemiology and Comparative Analysis of Yersinia in Ireland by Tamara Ringwood A thesis presented for the Degree of Doctor of Philosophy National University of Ireland, Cork University College Cork Coláiste na hOllscoile Corcaigh Department of Microbiology Head of Department: Prof. Gerald F. Fitzgerald Supervisor: Prof. Michael B. Prentice April 2013 Contents List of Tables .............................................................................................................................................. iv List of figures ............................................................................................................................................. vi Declaration ............................................................................................................................................... viii Acknowledgements ................................................................................................................................ -
NZMS Annual Conference 2017
NZMS Annual Conference 2017 20-23 November, AUT, Auckland PROGRAMME & ABSTRACTS MAJOR SPONSORS: WELCOME Welcome to the 2017 annual meeting of the New Zealand Microbiological Society. This year the theme of the NZ Microbiological Society (NZMS) conference is, “Our well-being and our microbes”. We are highlighting the dependence of our economy on maintaining and developing healthy microbial interactions while minimising diseases of concern for humans, livestock and plants. This conference covers the diverse field of microbiology and its disciplines including agricultural, environmental, food, medical and biotechnology sectors that rely on microbial knowledge, management and products. As our biggest city, Auckland and the surrounding regions has something for everyone, from hot springs to harbours, whale-watching to wine-tasting, mountains to museums and we look forward to hosting your stay here. CONFERENCE COMMITTEE Conference Chairs Gavin Lear (University of Auckland) | [email protected] Brent Seale (Auckland University of Technology) | [email protected] Organising Committee Steve Flint (Massey University) Kim Handley (University of Auckland) Heather Hendrickson (Massey University) Syrie Hermans – Student Representative (University of Auckland) Thomas Proft (University of Auckland) Mike Taylor (University of Auckland) Bevan Weir (Landcare Research) Weiqin Zhuang (University of Auckland) Rosemary Hancock (événements Limited) Conference Manager | [email protected] Lauren Williams (Auckland University of Technology) Event Co-ordinator WHILE AT THE CONFERENCE… o Registration desk contact phone number: Rosemary, ph 021 217 8298 o Please wear your name label to all conference sessions and social functions. These badges identify you as a NZMS conference participant. The venue is a public space and you may be asked to leave the catering areas if we cannot identify you! o Please take note of the location of the exits in all conference rooms and in your accommodation. -
Insect Pathogens As Biological Control Agents: Back to the Future ⇑ L.A
Journal of Invertebrate Pathology 132 (2015) 1–41 Contents lists available at ScienceDirect Journal of Invertebrate Pathology journal homepage: www.elsevier.com/locate/jip Insect pathogens as biological control agents: Back to the future ⇑ L.A. Lacey a, , D. Grzywacz b, D.I. Shapiro-Ilan c, R. Frutos d, M. Brownbridge e, M.S. Goettel f a IP Consulting International, Yakima, WA, USA b Agriculture Health and Environment Department, Natural Resources Institute, University of Greenwich, Chatham Maritime, Kent ME4 4TB, UK c U.S. Department of Agriculture, Agricultural Research Service, 21 Dunbar Rd., Byron, GA 31008, USA d University of Montpellier 2, UMR 5236 Centre d’Etudes des agents Pathogènes et Biotechnologies pour la Santé (CPBS), UM1-UM2-CNRS, 1919 Route de Mendes, Montpellier, France e Vineland Research and Innovation Centre, 4890 Victoria Avenue North, Box 4000, Vineland Station, Ontario L0R 2E0, Canada f Agriculture and Agri-Food Canada, Lethbridge Research Centre, Lethbridge, Alberta, Canada1 article info abstract Article history: The development and use of entomopathogens as classical, conservation and augmentative biological Received 24 March 2015 control agents have included a number of successes and some setbacks in the past 15 years. In this forum Accepted 17 July 2015 paper we present current information on development, use and future directions of insect-specific Available online 27 July 2015 viruses, bacteria, fungi and nematodes as components of integrated pest management strategies for con- trol of arthropod pests of crops, forests, urban habitats, and insects of medical and veterinary importance. Keywords: Insect pathogenic viruses are a fruitful source of microbial control agents (MCAs), particularly for the con- Microbial control trol of lepidopteran pests. -
International Journal of Systematic and Evolutionary Microbiology (2016), 66, 5575–5599 DOI 10.1099/Ijsem.0.001485
International Journal of Systematic and Evolutionary Microbiology (2016), 66, 5575–5599 DOI 10.1099/ijsem.0.001485 Genome-based phylogeny and taxonomy of the ‘Enterobacteriales’: proposal for Enterobacterales ord. nov. divided into the families Enterobacteriaceae, Erwiniaceae fam. nov., Pectobacteriaceae fam. nov., Yersiniaceae fam. nov., Hafniaceae fam. nov., Morganellaceae fam. nov., and Budviciaceae fam. nov. Mobolaji Adeolu,† Seema Alnajar,† Sohail Naushad and Radhey S. Gupta Correspondence Department of Biochemistry and Biomedical Sciences, McMaster University, Hamilton, Ontario, Radhey S. Gupta L8N 3Z5, Canada [email protected] Understanding of the phylogeny and interrelationships of the genera within the order ‘Enterobacteriales’ has proven difficult using the 16S rRNA gene and other single-gene or limited multi-gene approaches. In this work, we have completed comprehensive comparative genomic analyses of the members of the order ‘Enterobacteriales’ which includes phylogenetic reconstructions based on 1548 core proteins, 53 ribosomal proteins and four multilocus sequence analysis proteins, as well as examining the overall genome similarity amongst the members of this order. The results of these analyses all support the existence of seven distinct monophyletic groups of genera within the order ‘Enterobacteriales’. In parallel, our analyses of protein sequences from the ‘Enterobacteriales’ genomes have identified numerous molecular characteristics in the forms of conserved signature insertions/deletions, which are specifically shared by the members of the identified clades and independently support their monophyly and distinctness. Many of these groupings, either in part or in whole, have been recognized in previous evolutionary studies, but have not been consistently resolved as monophyletic entities in 16S rRNA gene trees. The work presented here represents the first comprehensive, genome- scale taxonomic analysis of the entirety of the order ‘Enterobacteriales’. -
Control Biológico De Insectos Plagas
Volumen 1. Agentes de control biológico Capítulo 5 Bacterias entomopatógenas en Sección II el control biológico de insectos Control biológico Capítulo 6 Hongos entomopatógenos en de insectos plagas el control biológico de insectos plagas Capítulo 7 Virus entomopatógenos en el control biológico de insectos Capítulo 8 Las feromonas en el control de insectos Capítulo 9 Uso de depredadorescomo agentes de control biológico para insectos plaga Capítulo 10 Uso de parasitoides en el control biológico de insectos plagas en Colombia Volumen 1. Agentes de control biológico Capítulo 5 Contenido Bacterias entomopatógenas Introducción . .300 en el control biológico de insectos Historia . .301 Clasificación, huéspedes y uso en control biológico . .302 Chapter 5 Bacterias Gram-positivas . 302 Bacterias Gram-negativas . 316 Entomopathogenic bacteria Historias de éxito y aplicación . 322 in insect biological control Limitaciones en el uso de bacterias entomopatógenas . .324 Conclusiones y perspectivas . .325 Agradecimientos . 325 Referencias . 326 Erika Grijalba,1 Mark Hurst,2 Jorge E. Ibarra,3 Juan Luis Jurat-Fuentes,4 Trevor Jackson2 1 Corporación Colombiana de Investigación Agropecuaria (agrosavia) 2 AgResearch, Lincoln Research Centre y Bio-Protection Research Centre 3 Centro de Investigación y de Estudios Avanzados del ipn (cinvestav) 4 Departament of Entomology and Plant Pathology, University of Tennessee. Resumen Abstract Este capítulo presenta una revisión de las bacterias entomopatógenas que han This chapter reviews entomopathogenic bacteria that have been used in sido utilizadas para el control microbiológico de insectos considerados como microbial control of insect pests and covers their identification, mode of plaga, incluyendo su identificación, modo de acción y uso en el control de action and aspects of their use in pest control . -
Microbial Biopesticides in Agroecosystems
agronomy Review Microbial Biopesticides in Agroecosystems Luca Ruiu 1,2 1 Dipartimento di Agraria, University of Sassari, 07100 Sassari, Italy; [email protected]; Tel.: +39-079-229-326 2 Bioecopest Srl, Technology Park of Sardinia, 07041 Alghero (SS), Italy Received: 11 September 2018; Accepted: 22 October 2018; Published: 23 October 2018 Abstract: Microbial biopesticides include several microorganisms like bacteria, fungi, baculoviruses, and nematode-associated bacteria acting against invertebrate pests in agro-ecosystems. The biopesticide sector is experiencing a significant growth and many discoveries are being developed into new biopesticidal products that are fueling a growing global market offer. Following a few decades of successful use of the entomopathogenic bacterium Bacillus thuringiensis and a few other microbial species, recent academic and industrial efforts have led to the discovery of new microbial species and strains, and of their specific toxins and virulence factors. Many of these have, therefore, been developed into commercial products. Bacterial entomopathogens include several Bacillaceae, Serratia, Pseudomonas, Yersinia, Burkholderia, Chromobacterium, Streptomyces, and Saccharopolyspora species, while fungi comprise different strains of Beauveria bassiana, B. brongniartii, Metarhizium anisopliae, Verticillium, Lecanicillium, Hirsutella, Paecilomyces, and Isaria species. Baculoviruses are species-specific and refer to niche products active against chewing insects, especially Lepidopteran caterpillars. Entomopathogenic