Teleotypification of Fungal Names and Its Limitations
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Multi-Gene Phylogeny of Jattaea Bruguierae, a Novel Asexual Morph from Bruguiera Cylindrica
Studies in Fungi 2 (1): 235–245 (2017) www.studiesinfungi.org ISSN 2465-4973 Article Doi 10.5943/sif/ 2/1/27 Copyright © Mushroom Research Foundation Multi-gene phylogeny of Jattaea bruguierae, a novel asexual morph from Bruguiera cylindrica Dayarathne MC1,2, Abeywickrama P1,2,3, Jones EBG4, Bhat DJ5,6, Chomnunti P1,2 and Hyde KD2,3,4 1 Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand. 2 School of Science, Mae Fah Luang University, Chiang Rai57100, Thailand. 3 Institute of Plant and Environment Protection, Beijing Academy of Agriculture and Forestry Sciences. 4 Department of Botany and Microbiology, King Saudi University, Riyadh, Saudi Arabia. 5 No. 128/1-J, Azad Housing Society, Curca, P.O. Goa Velha 403108, India. 6 Formerly, Department of Botany, Goa University, Goa 403 206, India. Dayarathne MC, Abeywickrama P, Jones EBG, Bhat DJ, Chomnunti P, Hyde KD 2017 – Multi- gene phylogeny of Jattaea bruguierae, a novel asexual morph from Bruguiera cylindrica. Studies in Fungi 2(1), 235–245, Doi 10.5943/sif/2/1/27 Abstract During our survey on marine-based ascomycetes of southern Thailand, fallen mangrove twigs were collected from the intertidal zones. Those specimens yielded a novel asexual morph of Jattaea (Calosphaeriaceae, Calosphaeriales), Jattaea bruguierae, which is confirmed as a new species by morphological characteristics such as nature and measurements of conidia and conidiophores, as well as a multigene analysis based on combined LSU, SSU, ITS and β-tubulin sequence data. Jattaea species are abundantly found from wood in terrestrial environments, while the asexual morphs are mostly reported from axenic cultures. -
Structural Diversity in Echinocandin Biosynthesis: the Impact of Oxidation Steps and Approaches Toward an Evolutionary Explanation
Z. Naturforsch. 2017; 72(1-2)c: 1–20 Wolfgang Hüttel* Structural diversity in echinocandin biosynthesis: the impact of oxidation steps and approaches toward an evolutionary explanation DOI 10.1515/znc-2016-0156 can be well applied to parts of the pathway; however, thus Received July 29, 2016; revised July 29, 2016; accepted August 28, far, there is no comprehensive theory that could explain 2016 the entire biosynthesis. Abstract: Echinocandins are an important group of cyclic Keywords: antifungals; gene clusters; metabolic diversity; non-ribosomal peptides with strong antifungal activ- non-ribosomal peptide biosynthesis; secondary meta- ity produced by filamentous fungi from Aspergillaceae bolism; filamentous fungi. and Leotiomycetes. Their structure is characterized by numerous hydroxylated non-proteinogenic amino acids. Biosynthetic clusters discovered in the last years contain up to six oxygenases, all of which are involved in amino 1 Introduction acid modifications. Especially, variations in the oxidation Echinocandins are fungal non-ribosomal cyclic hexapep- pattern induced by these enzymes account for a remark- tides with a fatty acid side chain attached to a dihydroxy- able structural diversity among the echinocandins. This ornithine residue. As they are specific noncompetitive review provides an overview of the current knowledge of inhibitors of the β-1,3-glucan synthase involved in fungal echinocandin biosynthesis with a special focus on diver- cell wall biosynthesis, they have a pronounced antifungal sity-inducing oxidation steps. The emergence of metabolic bioactivity. Although natural echinocandins are not of diversity is further discussed on the basis of a comprehen- clinical use due to their toxicity and low solubility, chemi- sive overview of the structurally characterized echinocan- cal derivatives such as caspofungin, anidulafungin, and dins, their producer strains and biosynthetic clusters. -
Phylogenetic Reconstruction of the Calosphaeriales and Togniniales Using Five Genes and Predicted RNA Secondary Structures of ITS, and Flabellascus Tenuirostris Gen
RESEARCH ARTICLE Phylogenetic Reconstruction of the Calosphaeriales and Togniniales Using Five Genes and Predicted RNA Secondary Structures of ITS, and Flabellascus tenuirostris gen. et sp. nov. Martina Réblová1*, Walter M. Jaklitsch2,3, Kamila Réblová4,5, Václav Štěpánek6 1 Department of Taxonomy, Institute of Botany of the Academy of Sciences of the Czech Republic, Průhonice, Czech Republic, 2 Department of Forest and Soil Sciences, Forest Pathology and Forest Protection, Institute of Forest Entomology, BOKU-University of Natural Resources and Life Sciences, Vienna, Austria, 3 Department of Botany and Biodiversity Research, Division of Systematic and Evolutionary Botany, University of Vienna, Vienna, Austria, 4 Faculty of Medicine, Masaryk University, Brno, Czech Republic, 5 Central European Institute of Technology, Masaryk University, Brno, Czech Republic, 6 Laboratory of Enzyme Technology, Institute of Microbiology of the Academy of Sciences of the Czech OPEN ACCESS Republic, Prague, Czech Republic Citation: Réblová M, Jaklitsch WM, Réblová K, * [email protected] Štěpánek V (2015) Phylogenetic Reconstruction of the Calosphaeriales and Togniniales Using Five Genes and Predicted RNA Secondary Structures of ITS, and Flabellascus tenuirostris gen. et sp. nov. Abstract PLoS ONE 10(12): e0144616. doi:10.1371/journal. pone.0144616 The Calosphaeriales is revisited with new collection data, living cultures, morphological studies of ascoma centrum, secondary structures of the internal transcribed spacer (ITS) Editor: Tamás Papp, University of Szeged, HUNGARY rDNA and phylogeny based on novel DNA sequences of five nuclear ribosomal and protein- coding loci. Morphological features, molecular evidence and information from predicted Received: September 9, 2015 RNA secondary structures of ITS converged upon robust phylogenies of the Calosphaer- Accepted: November 20, 2015 iales and Togniniales. -
Department of Plant Pathology
DEPARTMENT OF PLANT PATHOLOGY UNIVERSITY OF STELLENBOSCH RESEARCH OUTPUT PUBLICATIONS In scientific journals 1. Van Der Bijl, P.A. 1921. Additional host-plants of Loranthaceae occurring around Durban. South African Journal of Science 17: 185-186. 2. Van Der Bijl, P.A. 1921. Note on the I-Kowe or Natal kafir mushroom, Schulzeria Umkowaan. South African Journal of Science 17: 286-287. 3. Van Der Bijl, P.A. 1921. A paw-paw leaf spot caused by a Phyllosticta sp. South African Journal of Science 17: 288-290. 4. Van Der Bijl, P.A. 1921. South African Xylarias occurring around Durban, Natal. Transactions of the Royal Society of South Africa 9: 181-183, 1921. 5. Van Der Bijl, P.A. 1921. The genus Tulostoma in South Africa. Transactions of the Royal Society of South Africa 9: 185-186. 6. Van Der Bijl, P.A. 1921. On a fungus - Ovulariopsis Papayae, n. sp. - which causes powdery mildew on the leaves of the pawpaw plant (Carica papaya, Linn.). Transactions of the Royal Society of South Africa 9: 187-189. 7. Van Der Bijl, P.A. 1921. Note on Lysurus Woodii (MacOwan), Lloyd. Transactions of the Royal Society of South Africa 9: 191-193. 8. Van Der Bijl, P.A. 1921. Aantekenings op enige suikerriet-aangeleenthede. Journal of the Department of Agriculture, Union of South Africa 2: 122-128. 9. Van Der Bijl, P.A. 1922. On some fungi from the air of sugar mills and their economic importance to the sugar industry. South African Journal of Science 18: 232-233. 10. Van Der Bijl, P.A. -
Amplistroma Gen. Nov. and Its Relation to Wallrothiella, Two Genera with Globose Ascospores and Acrodontium-Like Anamorphs
Mycologia, 101(6), 2009, pp. 904–919. DOI: 10.3852/08-213 # 2009 by The Mycological Society of America, Lawrence, KS 66044-8897 Amplistroma gen. nov. and its relation to Wallrothiella, two genera with globose ascospores and acrodontium-like anamorphs Sabine M. Huhndorf1 INTRODUCTION Botany Department, Field Museum of Natural History, Chicago, Illinois 60605-2496 Genus Wallrothiella Sacc. recently has been rede- scribed and the type species, W. congregata (Wallr.) Andrew N. Miller Sacc., was neotypified based on collections from Illinois Natural History Survey, University of Illinois at France and Ukraine (Re´blova´ and Seifert 2004). Urbana-Champaign, Champaign, Illinois 61820-6970 The genus is distinct in its globose, long-necked Matthew Greif ascomata, its wide, long, tapering paraphyses and its Botany Department, Field Museum of Natural History, cylindrical, stipitate asci with eight, small, globose Chicago, Illinois 60605-2496 ascospores. Surveys of wood-inhabiting Sordariomy- cetes in Puerto Rico and Great Smoky Mountains Gary J. Samuels National Park in the eastern United States uncovered USDA-ARS, Systematic Mycology & Microbiology several specimens that match the description of W. Laboratory, Room 304, B-011A, 10300 Baltimore Avenue, Beltsville, Maryland 20705-2350 congregata, and a collection from Puerto Rico was obtained in culture. A few years earlier several specimens that shared key characteristics of W. Abstract: Amplistroma is described as a new genus congregata were conveyed to us. These specimens for A. carolinianum, A. diminutisporum, A. guianense, have the same distinctive eight, globose-spored asci A. hallingii, A. ravum, A. tartareum and A. xylar- and wide paraphyses that are long and tapering above ioides.SpeciesofAmplistroma are distinguished by the asci. -
Lists of Names in Aspergillus and Teleomorphs As Proposed by Pitt and Taylor, Mycologia, 106: 1051-1062, 2014 (Doi: 10.3852/14-0
Lists of names in Aspergillus and teleomorphs as proposed by Pitt and Taylor, Mycologia, 106: 1051-1062, 2014 (doi: 10.3852/14-060), based on retypification of Aspergillus with A. niger as type species John I. Pitt and John W. Taylor, CSIRO Food and Nutrition, North Ryde, NSW 2113, Australia and Dept of Plant and Microbial Biology, University of California, Berkeley, CA 94720-3102, USA Preamble The lists below set out the nomenclature of Aspergillus and its teleomorphs as they would become on acceptance of a proposal published by Pitt and Taylor (2014) to change the type species of Aspergillus from A. glaucus to A. niger. The central points of the proposal by Pitt and Taylor (2014) are that retypification of Aspergillus on A. niger will make the classification of fungi with Aspergillus anamorphs: i) reflect the great phenotypic diversity in sexual morphology, physiology and ecology of the clades whose species have Aspergillus anamorphs; ii) respect the phylogenetic relationship of these clades to each other and to Penicillium; and iii) preserve the name Aspergillus for the clade that contains the greatest number of economically important species. Specifically, of the 11 teleomorph genera associated with Aspergillus anamorphs, the proposal of Pitt and Taylor (2014) maintains the three major teleomorph genera – Eurotium, Neosartorya and Emericella – together with Chaetosartorya, Hemicarpenteles, Sclerocleista and Warcupiella. Aspergillus is maintained for the important species used industrially and for manufacture of fermented foods, together with all species producing major mycotoxins. The teleomorph genera Fennellia, Petromyces, Neocarpenteles and Neopetromyces are synonymised with Aspergillus. The lists below are based on the List of “Names in Current Use” developed by Pitt and Samson (1993) and those listed in MycoBank (www.MycoBank.org), plus extensive scrutiny of papers publishing new species of Aspergillus and associated teleomorph genera as collected in Index of Fungi (1992-2104). -
<I>Acrocordiella</I>
Persoonia 37, 2016: 82–105 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE http://dx.doi.org/10.3767/003158516X690475 Resolution of morphology-based taxonomic delusions: Acrocordiella, Basiseptospora, Blogiascospora, Clypeosphaeria, Hymenopleella, Lepteutypa, Pseudapiospora, Requienella, Seiridium and Strickeria W.M. Jaklitsch1,2, A. Gardiennet3, H. Voglmayr2 Key words Abstract Fresh material, type studies and molecular phylogeny were used to clarify phylogenetic relationships of the nine genera Acrocordiella, Blogiascospora, Clypeosphaeria, Hymenopleella, Lepteutypa, Pseudapiospora, Ascomycota Requienella, Seiridium and Strickeria. At first sight, some of these genera do not seem to have much in com- Dothideomycetes mon, but all were found to belong to the Xylariales, based on their generic types. Thus, the most peculiar finding new genus is the phylogenetic affinity of the genera Acrocordiella, Requienella and Strickeria, which had been classified in phylogenetic analysis the Dothideomycetes or Eurotiomycetes, to the Xylariales. Acrocordiella and Requienella are closely related but pyrenomycetes distinct genera of the Requienellaceae. Although their ascospores are similar to those of Lepteutypa, phylogenetic Pyrenulales analyses do not reveal a particularly close relationship. The generic type of Lepteutypa, L. fuckelii, belongs to the Sordariomycetes Amphisphaeriaceae. Lepteutypa sambuci is newly described. Hymenopleella is recognised as phylogenetically Xylariales distinct from Lepteutypa, and Hymenopleella hippophaëicola is proposed as new name for its generic type, Spha eria (= Lepteutypa) hippophaës. Clypeosphaeria uniseptata is combined in Lepteutypa. No asexual morphs have been detected in species of Lepteutypa. Pseudomassaria fallax, unrelated to the generic type, P. chondrospora, is transferred to the new genus Basiseptospora, the genus Pseudapiospora is revived for P. corni, and Pseudomas saria carolinensis is combined in Beltraniella (Beltraniaceae). -
Resolving the Polyphyletic Nature of Pyricularia (Pyriculariaceae)
available online at www.studiesinmycology.org STUDIES IN MYCOLOGY ▪:1–36. Resolving the polyphyletic nature of Pyricularia (Pyriculariaceae) S. Klaubauf1,2, D. Tharreau3, E. Fournier4, J.Z. Groenewald1, P.W. Crous1,5,6*, R.P. de Vries1,2, and M.-H. Lebrun7* 1CBS-KNAW Fungal Biodiversity Centre, 3584 CT Utrecht, The Netherlands; 2Fungal Molecular Physiology, Utrecht University, Utrecht, The Netherlands; 3UMR BGPI, CIRAD, Campus International de Baillarguet, F-34398 Montpellier, France; 4UMR BGPI, INRA, Campus International de Baillarguet, F-34398 Montpellier, France; 5Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria 0002, South Africa; 6Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands; 7UR1290 INRA BIOGER-CPP, Campus AgroParisTech, F-78850 Thiverval-Grignon, France *Correspondence: P.W. Crous, [email protected]; M.-H. Lebrun, [email protected] Abstract: Species of Pyricularia (magnaporthe-like sexual morphs) are responsible for major diseases on grasses. Pyricularia oryzae (sexual morph Magnaporthe oryzae) is responsible for the major disease of rice called rice blast disease, and foliar diseases of wheat and millet, while Pyricularia grisea (sexual morph Magnaporthe grisea) is responsible for foliar diseases of Digitaria. Magnaporthe salvinii, M. poae and M. rhizophila produce asexual spores that differ from those of Pyricularia sensu stricto that has pyriform, 2-septate conidia produced on conidiophores with sympodial proliferation. Magnaporthe salvinii was recently allocated to Nakataea, while M. poae and M. rhizophila were placed in Magnaporthiopsis. To clarify the taxonomic relationships among species that are magnaporthe- or pyricularia-like in morphology, we analysed phylogenetic relationships among isolates representing a wide range of host plants by using partial DNA sequences of multiple genes such as LSU, ITS, RPB1, actin and calmodulin. -
Multigene Phylogeny and Secondary ITS Structure
Persoonia 35, 2015: 21–38 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE http://dx.doi.org/10.3767/003158515X687434 Molecular systematics of Barbatosphaeria (Sordariomycetes): multigene phylogeny and secondary ITS structure M. Réblová1, K. Réblová2, V. Štěpánek3 Key words Abstract Thirteen morphologically similar strains of barbatosphaeria- and tectonidula-like fungi were studied based on the comparison of cultural and morphological features of sexual and asexual morphs and phylogenetic analyses phylogenetics of five nuclear loci, i.e. internal transcribed spacer rDNA operon (ITS), large and small subunit nuclear ribosomal Ramichloridium DNA, β-tubulin, and second largest subunit of RNA polymerase II. Phylogenetic results were supported by in-depth sequence analysis comparative analyses of common core secondary structure of ITS1 and ITS2 in all strains and the identification spacer regions of non-conserved, co-evolving nucleotides that maintain base pairing in the RNA transcript. Barbatosphaeria is Sporothrix defined as a well-supported monophyletic clade comprising several lineages and is placed in the Sordariomycetes Tectonidula incertae sedis. The genus is expanded to encompass nine species with both septate and non-septate ascospores in clavate, stipitate asci with a non-amyloid apical annulus and non-stromatic ascomata with a long decumbent neck and carbonised wall often covered by pubescence. The asexual morphs are dematiaceous hyphomycetes with holoblastic conidiogenesis belonging to Ramichloridium and Sporothrix types. The morphologically similar Tectonidula, represented by the type species T. hippocrepida, grouped with members of Barbatosphaeria and is transferred to that genus. Four new species are introduced and three new combinations in Barbatosphaeria are proposed. A dichotomous key to species accepted in the genus is provided. -
A Survey of Endophytic Fungi Associated with High-Risk Plants Imported for Ornamental Purposes
agriculture Review A Survey of Endophytic Fungi Associated with High-Risk Plants Imported for Ornamental Purposes Laura Gioia 1,*, Giada d’Errico 1,* , Martina Sinno 1 , Marta Ranesi 1, Sheridan Lois Woo 2,3,4 and Francesco Vinale 4,5 1 Department of Agricultural Sciences, University of Naples Federico II, 80055 Portici, Italy; [email protected] (M.S.); [email protected] (M.R.) 2 Department of Pharmacy, University of Naples Federico II, 80131 Naples, Italy; [email protected] 3 Task Force on Microbiome Studies, University of Naples Federico II, 80128 Naples, Italy 4 National Research Council, Institute for Sustainable Plant Protection, 80055 Portici, Italy; [email protected] 5 Department of Veterinary Medicine and Animal Productions, University of Naples Federico II, 80137 Naples, Italy * Correspondence: [email protected] (L.G.); [email protected] (G.d.); Tel.: +39-2539344 (L.G. & G.d.) Received: 31 October 2020; Accepted: 11 December 2020; Published: 17 December 2020 Abstract: An extensive literature search was performed to review current knowledge about endophytic fungi isolated from plants included in the European Food Safety Authority (EFSA) dossier. The selected genera of plants were Acacia, Albizia, Bauhinia, Berberis, Caesalpinia, Cassia, Cornus, Hamamelis, Jasminus, Ligustrum, Lonicera, Nerium, and Robinia. A total of 120 fungal genera have been found in plant tissues originating from several countries. Bauhinia and Cornus showed the highest diversity of endophytes, whereas Hamamelis, Jasminus, Lonicera, and Robinia exhibited the lowest. The most frequently detected fungi were Aspergillus, Colletotrichum, Fusarium, Penicillium, Phyllosticta, and Alternaria. Plants and plant products represent an inoculum source of several mutualistic or pathogenic fungi, including quarantine pathogens. -
Myconet Volume 14 Part One. Outine of Ascomycota – 2009 Part Two
(topsheet) Myconet Volume 14 Part One. Outine of Ascomycota – 2009 Part Two. Notes on ascomycete systematics. Nos. 4751 – 5113. Fieldiana, Botany H. Thorsten Lumbsch Dept. of Botany Field Museum 1400 S. Lake Shore Dr. Chicago, IL 60605 (312) 665-7881 fax: 312-665-7158 e-mail: [email protected] Sabine M. Huhndorf Dept. of Botany Field Museum 1400 S. Lake Shore Dr. Chicago, IL 60605 (312) 665-7855 fax: 312-665-7158 e-mail: [email protected] 1 (cover page) FIELDIANA Botany NEW SERIES NO 00 Myconet Volume 14 Part One. Outine of Ascomycota – 2009 Part Two. Notes on ascomycete systematics. Nos. 4751 – 5113 H. Thorsten Lumbsch Sabine M. Huhndorf [Date] Publication 0000 PUBLISHED BY THE FIELD MUSEUM OF NATURAL HISTORY 2 Table of Contents Abstract Part One. Outline of Ascomycota - 2009 Introduction Literature Cited Index to Ascomycota Subphylum Taphrinomycotina Class Neolectomycetes Class Pneumocystidomycetes Class Schizosaccharomycetes Class Taphrinomycetes Subphylum Saccharomycotina Class Saccharomycetes Subphylum Pezizomycotina Class Arthoniomycetes Class Dothideomycetes Subclass Dothideomycetidae Subclass Pleosporomycetidae Dothideomycetes incertae sedis: orders, families, genera Class Eurotiomycetes Subclass Chaetothyriomycetidae Subclass Eurotiomycetidae Subclass Mycocaliciomycetidae Class Geoglossomycetes Class Laboulbeniomycetes Class Lecanoromycetes Subclass Acarosporomycetidae Subclass Lecanoromycetidae Subclass Ostropomycetidae 3 Lecanoromycetes incertae sedis: orders, genera Class Leotiomycetes Leotiomycetes incertae sedis: families, genera Class Lichinomycetes Class Orbiliomycetes Class Pezizomycetes Class Sordariomycetes Subclass Hypocreomycetidae Subclass Sordariomycetidae Subclass Xylariomycetidae Sordariomycetes incertae sedis: orders, families, genera Pezizomycotina incertae sedis: orders, families Part Two. Notes on ascomycete systematics. Nos. 4751 – 5113 Introduction Literature Cited 4 Abstract Part One presents the current classification that includes all accepted genera and higher taxa above the generic level in the phylum Ascomycota. -
One Fungus, One Name Promotes Progressive Plant Pathology
bs_bs_banner MOLECULAR PLANT PATHOLOGY (2012) 13(6), 604–613 DOI: 10.1111/J.1364-3703.2011.00768.X Reviewmpp_768 604..613 One fungus, one name promotes progressive plant pathology MICHAEL J. WINGFIELD1, Z. WILHELM DE BEER1,2,*, BERNARD SLIPPERS1,3, BRENDA D. WINGFIELD1,3, JOHANNES Z. GROENEWALD4, LORENZO LOMBARD4 AND PEDRO W. CROUS4 1Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Pretoria 0002, South Africa 2Department of Microbiology, FABI, University of Pretoria, Pretoria 0002, South Africa 3Department of Genetics, FABI, University of Pretoria, Pretoria 0002, South Africa 4CBS-KNAW Fungal Biodiversity Centre, PO Box 85167, 3508 AD, Utrecht, the Netherlands and sometimes requires long periods of trial and error before SUMMARY success is achieved. The testing of Koch’s postulates, although on The robust and reliable identification of fungi underpins virtually the surface appears to be simple, can be extremely difficult. Some- every element of plant pathology,from disease diagnosis to studies times it is not possible, at least in a manner that appropriately of biology, management/control, quarantine and, even more reflects natural ecological situations. Although the above two recently, comparative genomics. Most plant diseases are caused by steps in disease diagnosis harbour problems, it is the identification fungi, typically pleomorphic organisms, for which the taxonomy of putative pathogens that can be most complicated. For the fungi, and, in particular, a dual nomenclature system have frustrated and this is a particularly pertinent issue and one that is currently the confused practitioners of plant pathology. The emergence of DNA subject of substantial debate. sequencing has revealed cryptic taxa and revolutionized our under- It is an interesting fact that most plant diseases are caused by standing of relationships in the fungi.The impacts on plant pathol- ascomycete fungi.