The Etyfish Project © Christopher Scharpf and Kenneth J
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
§4-71-6.5 LIST of CONDITIONALLY APPROVED ANIMALS November
§4-71-6.5 LIST OF CONDITIONALLY APPROVED ANIMALS November 28, 2006 SCIENTIFIC NAME COMMON NAME INVERTEBRATES PHYLUM Annelida CLASS Oligochaeta ORDER Plesiopora FAMILY Tubificidae Tubifex (all species in genus) worm, tubifex PHYLUM Arthropoda CLASS Crustacea ORDER Anostraca FAMILY Artemiidae Artemia (all species in genus) shrimp, brine ORDER Cladocera FAMILY Daphnidae Daphnia (all species in genus) flea, water ORDER Decapoda FAMILY Atelecyclidae Erimacrus isenbeckii crab, horsehair FAMILY Cancridae Cancer antennarius crab, California rock Cancer anthonyi crab, yellowstone Cancer borealis crab, Jonah Cancer magister crab, dungeness Cancer productus crab, rock (red) FAMILY Geryonidae Geryon affinis crab, golden FAMILY Lithodidae Paralithodes camtschatica crab, Alaskan king FAMILY Majidae Chionocetes bairdi crab, snow Chionocetes opilio crab, snow 1 CONDITIONAL ANIMAL LIST §4-71-6.5 SCIENTIFIC NAME COMMON NAME Chionocetes tanneri crab, snow FAMILY Nephropidae Homarus (all species in genus) lobster, true FAMILY Palaemonidae Macrobrachium lar shrimp, freshwater Macrobrachium rosenbergi prawn, giant long-legged FAMILY Palinuridae Jasus (all species in genus) crayfish, saltwater; lobster Panulirus argus lobster, Atlantic spiny Panulirus longipes femoristriga crayfish, saltwater Panulirus pencillatus lobster, spiny FAMILY Portunidae Callinectes sapidus crab, blue Scylla serrata crab, Samoan; serrate, swimming FAMILY Raninidae Ranina ranina crab, spanner; red frog, Hawaiian CLASS Insecta ORDER Coleoptera FAMILY Tenebrionidae Tenebrio molitor mealworm, -
The Evolution of the Placenta Drives a Shift in Sexual Selection in Livebearing Fish
LETTER doi:10.1038/nature13451 The evolution of the placenta drives a shift in sexual selection in livebearing fish B. J. A. Pollux1,2, R. W. Meredith1,3, M. S. Springer1, T. Garland1 & D. N. Reznick1 The evolution of the placenta from a non-placental ancestor causes a species produce large, ‘costly’ (that is, fully provisioned) eggs5,6, gaining shift of maternal investment from pre- to post-fertilization, creating most reproductive benefits by carefully selecting suitable mates based a venue for parent–offspring conflicts during pregnancy1–4. Theory on phenotype or behaviour2. These females, however, run the risk of mat- predicts that the rise of these conflicts should drive a shift from a ing with genetically inferior (for example, closely related or dishonestly reliance on pre-copulatory female mate choice to polyandry in conjunc- signalling) males, because genetically incompatible males are generally tion with post-zygotic mechanisms of sexual selection2. This hypoth- not discernable at the phenotypic level10. Placental females may reduce esis has not yet been empirically tested. Here we apply comparative these risks by producing tiny, inexpensive eggs and creating large mixed- methods to test a key prediction of this hypothesis, which is that the paternity litters by mating with multiple males. They may then rely on evolution of placentation is associated with reduced pre-copulatory the expression of the paternal genomes to induce differential patterns of female mate choice. We exploit a unique quality of the livebearing fish post-zygotic maternal investment among the embryos and, in extreme family Poeciliidae: placentas have repeatedly evolved or been lost, cases, divert resources from genetically defective (incompatible) to viable creating diversity among closely related lineages in the presence or embryos1–4,6,11. -
Non-Native Freshwater Fish Management in Biosphere Reserves
ISSN 1989‐8649 Manag. Biolog. Invasions, 2010, 1 Abstract Non‐Native freshwater fish management in Biosphere Reserves The consideration of non‐native freshwater fish species in the Andrea PINO‐DEL‐CARPIO*, Rafael MIRANDA & Jordi PUIG management plans of 18 Biosphere Reserves is evaluated. Additionally, impacts caused by introduced freshwater fish species are described. Introduction, Hypotheses and Reserves was created in 1974 and it Some measures to alleviate the Problems for Management is defined in the Statutory ecological effects of fish species Framework of the World network as introductions are proposed, while Biodiversity, the variety of life on “areas of terrestrial and coastal/ paying attention to local development Earth, is disappearing at an marine ecosystems, or a as well. The introduction of non‐native combination thereof, which are species may have negative conse‐ increasing and unprecedented rate quences for the ecosystems. The (Rockström et al. 2009). This internationally recognized within analysis of the management plans of situation contradicts the 2002 the framework of UNESCO the Reserves confirms that non‐native objective to achieve a significant Programme on Man and the freshwater fish species sometimes are reduction of the current rate of Biosphere (MaB)” (UNESCO 1996). not considered in the action plans of biodiversity loss by 2010 To what extent Biosphere Reserves the area. Biosphere Reserve’s (Convention on Biological Diversity fulfil the aim of biodiversity management plans should consider the 2002). One of the multiple initiatives conservation? In order to make a presence of alien species, with the aim adopted to promote biodiversity first inquiry in this issue, some to preserve biodiversity. -
Selection, Constraint, and Adaptation in the Visual Genes of Neotropical Cichlid Fishes and Other Vertebrates
SELECTION, CONSTRAINT, AND ADAPTATION IN THE VISUAL GENES OF NEOTROPICAL CICHLID FISHES AND OTHER VERTEBRATES by Frances Elisabeth Hauser A thesis submitted in conformity with the requirements for the degree of Doctor of Philosophy Ecology and Evolutionary Biology University of Toronto © Copyright by Frances E. Hauser 2018 SELECTION, CONSTRAINT, AND ADAPTATION IN THE VISUAL GENES OF NEOTROPICAL CICHLID FISHES AND OTHER VERTEBRATES Frances E. Hauser Doctor of Philosophy, 2018 Department of Ecology and Evolutionary Biology University of Toronto 2018 ABSTRACT The visual system serves as a direct interface between an organism and its environment. Studies of the molecular components of the visual transduction cascade, in particular visual pigments, offer an important window into the relationship between genetic variation and organismal fitness. In this thesis, I use molecular evolutionary models as well as protein modeling and experimental characterization to assess the role of variable evolutionary rates on visual protein function. In Chapter 2, I review recent work on the ecological and evolutionary forces giving rise to the impressive variety of adaptations found in visual pigments. In Chapter 3, I use interspecific vertebrate and mammalian datasets of two visual genes (RH1 or rhodopsin, and RPE65, a retinoid isomerase) to assess different methods for estimating evolutionary rate across proteins and the reliability of inferring evolutionary conservation at individual amino acid sites, with a particular emphasis on sites implicated in impaired protein function. ii In Chapters 4, and 5, I narrow my focus to devote particular attention to visual pigments in Neotropical cichlids, a highly diverse clade of fishes distributed across South and Central America. -
Two New Species of Australoheros (Teleostei: Cichlidae), with Notes on Diversity of the Genus and Biogeography of the Río De La Plata Basin
Zootaxa 2982: 1–26 (2011) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2011 · Magnolia Press ISSN 1175-5334 (online edition) Two new species of Australoheros (Teleostei: Cichlidae), with notes on diversity of the genus and biogeography of the Río de la Plata basin OLDŘICH ŘÍČAN1, LUBOMÍR PIÁLEK1, ADRIANA ALMIRÓN2 & JORGE CASCIOTTA2 1Department of Zoology, Faculty of Science, University of South Bohemia, Branišovská 31, 370 05, České Budějovice, Czech Republic. E-mail: [email protected], [email protected] 2División Zoología Vertebrados, Facultad de Ciencias Naturales y Museo, UNLP, Paseo del Bosque, 1900 La Plata, Argentina. E-mail: [email protected], [email protected] Abstract Two new species of Australoheros Říčan and Kullander are described. Australoheros ykeregua sp. nov. is described from the tributaries of the río Uruguay in Misiones province, Argentina. Australoheros angiru sp. nov. is described from the tributaries of the upper rio Uruguai and middle rio Iguaçu in Brazil. The two new species are not closely related, A. yke- regua is the sister species of A. forquilha Říčan and Kullander, while A. angiru is the sister species of A. minuano Říčan and Kullander. The diversity of the genus Australoheros is reviewed using morphological and molecular phylogenetic analyses. These analyses suggest that the described species diversity of the genus in the coastal drainages of SE Brazil is overestimated and that many described species are best undestood as representing cases of intraspecific variation. The dis- tribution patterns of Australoheros species in the Uruguay and Iguazú river drainages point to historical connections be- tween today isolated river drainages (the lower río Iguazú with the arroyo Urugua–í, and the middle rio Iguaçu with the upper rio Uruguai). -
Constraints on the Timescale of Animal Evolutionary History
Palaeontologia Electronica palaeo-electronica.org Constraints on the timescale of animal evolutionary history Michael J. Benton, Philip C.J. Donoghue, Robert J. Asher, Matt Friedman, Thomas J. Near, and Jakob Vinther ABSTRACT Dating the tree of life is a core endeavor in evolutionary biology. Rates of evolution are fundamental to nearly every evolutionary model and process. Rates need dates. There is much debate on the most appropriate and reasonable ways in which to date the tree of life, and recent work has highlighted some confusions and complexities that can be avoided. Whether phylogenetic trees are dated after they have been estab- lished, or as part of the process of tree finding, practitioners need to know which cali- brations to use. We emphasize the importance of identifying crown (not stem) fossils, levels of confidence in their attribution to the crown, current chronostratigraphic preci- sion, the primacy of the host geological formation and asymmetric confidence intervals. Here we present calibrations for 88 key nodes across the phylogeny of animals, rang- ing from the root of Metazoa to the last common ancestor of Homo sapiens. Close attention to detail is constantly required: for example, the classic bird-mammal date (base of crown Amniota) has often been given as 310-315 Ma; the 2014 international time scale indicates a minimum age of 318 Ma. Michael J. Benton. School of Earth Sciences, University of Bristol, Bristol, BS8 1RJ, U.K. [email protected] Philip C.J. Donoghue. School of Earth Sciences, University of Bristol, Bristol, BS8 1RJ, U.K. [email protected] Robert J. -
TIAGO OCTAVIO BEGOT RUFFEIL Avaliação Dos Efeitos Da
PROGRAMA DE PÓS-GRADUAÇÃO EM ZOOLOGIA UNIVERSIDADE FEDERAL DO PARÁ MUSEU PARAENSE EMÍLIO GOELDI TIAGO OCTAVIO BEGOT RUFFEIL Avaliação dos efeitos da monocultura de palma de dendê na estrutura do habitat e na diversidade de peixes de riachos amazônicos Belém, 2018 2 TIAGO OCTAVIO BEGOT RUFFEIL Avaliação dos efeitos da monocultura de palma de dendê na estrutura do habitat e na diversidade de peixes de riachos amazônicos Tese apresentada ao Programa de Pós-Graduação em Zoologia, do convênio da Universidade Federal do Pará e Museu Paraense Emílio Goeldi, como requisito parcial para obtenção do título de Doutor em Zoologia. Área de concentração: Biodiversidade e conservação Linha de Pesquisa: Ecologia animal Orientador: Prof. Dr. Luciano Fogaça de Assis Montag Belém, 2018 3 FICHA CATALOGRÁFICA 4 FOLHA DE APROVAÇÃO TIAGO OCTAVIO BEGOT RUFFEIL Avaliação dos efeitos da monocultura de palma de dendê na estrutura do habitat e na diversidade de peixes de riachos amazônicos Tese apresentada ao Programa de Pós-Graduação em Zoologia, do convênio da Universidade Federal do Pará e Museu Paraense Emílio Goeldi, como requisito parcial para obtenção do título de Doutor em Zoologia, sendo a COMISSÃO JULGADORA composta pelos seguintes membros: Prof. Dr. Luciano Fogaça de Assis Montag Universidade Federal do Pará (Presidente) Prof. Dra. Cecilia Gontijo Leal Museu Paraense Emílio Goeldi Prof. Dr. David Hoeinghaus University of North Texas Profa. Dra. Erica Maria Pellegrini Caramaschi Universidade Federal do Rio de Janeiro Prof. Dr. Marcos Pérsio Dantas Santos Universidade Federal do Pará Prof. Dr. Paulo dos Santos Pompeu Universidade Federal de Lavras Prof. Dr. Raphael Ligeiro Barroso Santos Universidade Federal do Pará Prof. -
Estrutura E Evolução Cariotípica De Peixes Ciclídeos Sul Americanos
UNIVERSIDADE ESTADUAL PAULISTA INSTITUTO DE BIOCIÊNCIAS CÂMPUS DE BOTUCATU ESTRUTURA E EVOLUÇÃO CARIOTÍPICA DE PEIXES CICLÍDEOS SUL AMERICANOS HERALDO BRUM RIBEIRO Dissertação apresentada ao Instituto de Biociências, Campus de Botucatu, UNESP, para obtenção do título de Mestre no Programa de PG em Biologia Geral e Aplicada BOTUCATU - SP 2007 II UNIVERSIDADE ESTADUAL PAULISTA INSTITUTO DE BIOCIÊNCIAS CAMPUS DE BOTUCATU ESTRUTURA E EVOLUÇÃO CARIOTÍPICA DE PEIXES CICLÍDEOS SUL AMERICANOS HERALDO BRUM RIBEIRO ORIENTADOR: Prof. Dr. CESAR MARTINS Dissertação apresentada ao Instituto de Biociências, Campus de Botucatu, UNESP, para obtenção do título de Mestre no Programa de PG em Biologia Geral e Aplicada BOTUCATU - SP 2007 III FICHA CATALOGRÁFICA ELABORADA PELA SEÇÃO TÉCNICA DE AQUISIÇÃO E TRATAMENTO DA INFORMAÇÃO DIVISÃO TÉCNICA DE BIBLIOTECA E DOCUMENTAÇÃO - CAMPUS DE BOTUCATU - UNESP BIBLIOTECÁRIA RESPONSÁVEL: Selma Maria de Jesus Ribeiro, Heraldo Brum. Estrutura e evolução cariotípica de peixes cichlídeos sul americanos / Heraldo Brum Ribeiro. – Botucatu : [s.n.], 2007. Dissertação (mestrado) – Universidade Estadual Paulista, Instituto de Biociências de Botucatu, 2007. Orientador: Cesar Martins Assunto CAPES: 20601000 1. Peixe - Citogenética 2. Peixe – Evolução CDD 597.15 Palavras-chave: Cichlidae; Citogenética; Peixe V Agradecimentos Ao Prof. Dr. Cesar Martins pela confiança depositada e oportunidade de desenvolver este trabalho no Laboratório de Biologia e Genética de Peixes do Departamento de Morfologia da IBB-UNESP. Ao Programa de Pós-Graduação em Biologia Geral e Aplicada pelo auxilio na realização deste estudo. À Universidade Federal de Mato Grosso do Sul (UFMS) pela oportunidade concedida. À FAPESP (Fundação de Amparo a Pesquisa do Estado de São Paulo) pelos recursos financeiros destinados aos projetos do laboratório. -
They're Not Just Convicts Anymore
2008 FAAS Publication Awards. Please follow reprint instructions at http://www.faas.info/2008_publication_awards_winners.html#reprintpolicy They’re Not Just Convicts Anymore By Daniel Spielman All Photos by Daniel Spielman Introduction Convicts get no respect, with many a cichlidophile turning up his or her nose at the sight of a group on Convicts in a tank or a bag of fry in an auction. It’s time for that to change. Easy to breed and exhibiting wonderful parental care, Convict cichlids (Cryptoheros nigrofasciatus) have long been staples in the hobby. Indeed, for many new fishkeepers, the satisfaction of watching a pair of Convict parents herd a group of fry around a tank sparks the initial desire to keep other mem bers of the cichlid family. Indeed, my fish cichlids were Convicts, and watch ing them care for their fry definitely got me hooked. The contrast with trying to keep guppies or swordtails from eating their own offspring is striking (how did eating one’s own young ever evolve in the first place?). However, the very fact that Convicts spawn so readily in the aquarium causes many hobbyists to quickly lose interest in the species. Although Convicts occasionally appear on experienced hobbyists’ lists of most favorite cichlid, the problem is they are just too common and too easy to breed. Typical Convict spawning jokes involve two fish and a wet paper towel, and one often feels fortunate to break the $1 barrier at the auction to avoid the indignity of having to bring one’s fish back home again at the end of the monthly club meeting. -
Guianacara Dacrya, a New Species from the Rio Branco and Essequibo River Drainages of the Guiana Shield (Perciformes: Cichlidae)
Neotropical Ichthyology, 9(1):87-96, 2011 Copyright © 2011 Sociedade Brasileira de Ictiologia Guianacara dacrya, a new species from the rio Branco and Essequibo River drainages of the Guiana Shield (Perciformes: Cichlidae) Jessica H. Arbour1 and Hernán López-Fernández1,2 A new species of Guianacara is described from tributaries of the Essequibo River and the rio Branco in Guyana and northern Brazil. Guianacara dacrya, new species, can be diagnosed from all congeners by the possession of a unique infraorbital stripe and by the shape of the lateral margin of the lower pharyngeal jaw tooth plate. Guianacara dacrya can be further distinguished from G. geayi, G. owroewefi, G. sphenozona and G. stergiosi by the possession of a thin midlateral bar, from G. cuyunii by the possession of dusky branchiostegal membranes and from G. oelemariensis by the possession of two supraneurals. This species differs from most congeners by the presence of white spots on the spiny portion of the dorsal fin, the placement of the midlateral spot, the presence of filaments on the dorsal, anal and in rare cases the caudal-fin and from at least the Venezuelan species by several morphometric variables. Guianacara dacrya is known from the Essequibo, Takutu and Ireng River basins of Guyana and possibly from the rio Uraricoera in the rio Branco basin in Brazil. A key to the species is provided. Describimos una especie nueva de Guianacara de las cuencas del río Essequibo y el río Branco en Guyana y el norte de Brasil. Guianacara dacrya, especie nueva, puede distinguirse de todos sus congéneres por la presencia de una barra infraorbital modificada y por la forma única del margen lateral de la placa dentada de la mandíbula faríngea inferior. -
Zuzana Musilová
CURRICULUM VITAE – ZUZANA MUSILOVÁ Salzburger Lab | Zoological Institute | Evolutionary Biology | University of Basel | Vesalgasse 1, CH – 4051 – Basel | Switzerland | [email protected] | [email protected] | tel: +41 (0)61 267 03 05 & Department of Zoology | Faculty of Science | Charles University in Prague | Viničná 7, CZ – 12844 – Praha | Czech Republic | [email protected] | tel: +420 777 885 630 born: 1983 (Czechoslovakia), nationality: Czech, languages: Czech (native), English, Spanish, Slovak (fluent), German, Portuguese (intermediate), French (basic) My general research interest is in evolutionary genomics and transcriptomics of fishes. EDUCATION AND ACADEMIC CAREER: 2015 – pres. – Assistant Professor (since September 2015) Charles University in Prague, Czech Republic. 2011 – 2015 – Post-Doctoral fellow (September 2011 – August 2015) SciEx-NMS foundation; Novartis - Universität Basel Excellence Scholarship for Life Sciences Salzburger Lab, Zoological Institute, University of Basel project: CICHLIDOMICS: next generation sequencing and molecular evolutionary analysis in East African cichlid fishes 2006 – 2011 – Ph.D. (Zoology) Charles University in Prague, Czech Republic thesis: Phylogeny and biogeography of Neotropical and African cichlids: multilocus phylogenetic methods in evolutionary studies 2001 – 2006 – M.Sc. (Zoology) Charles University in Prague, Czech Republic thesis: Molecular phylogeny of Neotropical cichlids of the tribe Cichlasomatini (Perciformes: Cichlidae: Cichlasomatinae) with biogeographic implications LABORATORY RESEARCH EXPERIENCE: 2011 – 2015 – Salzburger Lab, Zoological Institute, University of Basel, Switzerland. 2004 – 2011 – Laboratory of Fish Genetics, Institute of Animal Physiology and Genetics, Czech Academy of Science, Czech Republic, Europe. 2006 (Jan–May) – research stay in Cytogenetic laboratory in Department of Environmental Biology, University of Lisbon, Portugal, Europe. 2004 – 2006 – Laboratory for Biodiversity Research, Department of Zoology, Charles University in Prague, Czech Republic, Europe. -
A Rapid Biological Assessment of the Upper Palumeu River Watershed (Grensgebergte and Kasikasima) of Southeastern Suriname
Rapid Assessment Program A Rapid Biological Assessment of the Upper Palumeu River Watershed (Grensgebergte and Kasikasima) of Southeastern Suriname Editors: Leeanne E. Alonso and Trond H. Larsen 67 CONSERVATION INTERNATIONAL - SURINAME CONSERVATION INTERNATIONAL GLOBAL WILDLIFE CONSERVATION ANTON DE KOM UNIVERSITY OF SURINAME THE SURINAME FOREST SERVICE (LBB) NATURE CONSERVATION DIVISION (NB) FOUNDATION FOR FOREST MANAGEMENT AND PRODUCTION CONTROL (SBB) SURINAME CONSERVATION FOUNDATION THE HARBERS FAMILY FOUNDATION Rapid Assessment Program A Rapid Biological Assessment of the Upper Palumeu River Watershed RAP (Grensgebergte and Kasikasima) of Southeastern Suriname Bulletin of Biological Assessment 67 Editors: Leeanne E. Alonso and Trond H. Larsen CONSERVATION INTERNATIONAL - SURINAME CONSERVATION INTERNATIONAL GLOBAL WILDLIFE CONSERVATION ANTON DE KOM UNIVERSITY OF SURINAME THE SURINAME FOREST SERVICE (LBB) NATURE CONSERVATION DIVISION (NB) FOUNDATION FOR FOREST MANAGEMENT AND PRODUCTION CONTROL (SBB) SURINAME CONSERVATION FOUNDATION THE HARBERS FAMILY FOUNDATION The RAP Bulletin of Biological Assessment is published by: Conservation International 2011 Crystal Drive, Suite 500 Arlington, VA USA 22202 Tel : +1 703-341-2400 www.conservation.org Cover photos: The RAP team surveyed the Grensgebergte Mountains and Upper Palumeu Watershed, as well as the Middle Palumeu River and Kasikasima Mountains visible here. Freshwater resources originating here are vital for all of Suriname. (T. Larsen) Glass frogs (Hyalinobatrachium cf. taylori) lay their