Biotechnology of Bamboos
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Dendrocalamus Sinicus)
RESEARCH ARTICLE Transcriptome Sequencing and Analysis for Culm Elongation of the World’s Largest Bamboo (Dendrocalamus sinicus) Kai Cui1, Haiying Wang1, Shengxi Liao1*, Qi Tang2,LiLi1, Yongzhong Cui1, Yuan He1 1 Research Institute of Resources Insects, Chinese Academy of Forestry, Kunming, 650224, People’s Republic of China, 2 Hunan Co-Innovation Center for Utilization of Botanical Functional Ingredients, Hunan Agricultral University, Changsha, 410128, People’s Republic of China a11111 * [email protected] Abstract Dendrocalamus sinicus is the world’s largest bamboo species with strong woody culms, and known for its fast-growing culms. As an economic bamboo species, it was popularized OPEN ACCESS for multi-functional applications including furniture, construction, and industrial paper pulp. Citation: Cui K, Wang H, Liao S, Tang Q, Li L, Cui Y, To comprehensively elucidate the molecular processes involved in its culm elongation, et al. (2016) Transcriptome Sequencing and Analysis Illumina paired-end sequencing was conducted. About 65.08 million high-quality reads for Culm Elongation of the World’s Largest Bamboo (Dendrocalamus sinicus). PLoS ONE 11(6): were produced, and assembled into 81,744 unigenes with an average length of 723 bp. A e0157362. doi:10.1371/journal.pone.0157362 total of 64,338 (79%) unigenes were annotated for their functions, of which, 56,587 were Editor: Binying Fu, Institute of Crop Sciences, annotated in the NCBI non-redundant protein database and 35,262 were annotated in the CHINA Swiss-Prot database. Also, 42,508 and 21,009 annotated unigenes were allocated to Received: December 5, 2015 gene ontology (GO) categories and clusters of orthologous groups (COG), respectively. -
The Evolution and Utility of Ribosomal ITS Sequences in Bambusinae and Related Species: Divergence, Pseudogenes, and Implications for Phylogeny
c Indian Academy of Sciences RESEARCH ARTICLE The evolution and utility of ribosomal ITS sequences in Bambusinae and related species: divergence, pseudogenes, and implications for phylogeny HUI-XING SONG, SU-PING GAO, MING-YAN JIANG, GUANG-LI LIU, XIAO-FANG YU and QI-BING CHEN∗ School of Landscape Architecture, Sichuan Agricultural University, Wenjiang, Chengdu 611130, Sichuan, People’s Republic of China Abstract Ribosomal internal transcribed spacer (ITS) sequences are commonly used for phylogenetic reconstruction because they are highly reiterated as components of rDNA repeats, and hence are often subject to rapid homogenization through concerted evo- lution. Concerted evolution leads to intragenomic uniformity of repeats even between loci on nonhomologous chromosomes. However, a number of studies have shown that the ITS polymorphism within individuals is quite common. The molecu- lar systematics of Bambusinae and related species were recently assessed by different teams using independently generated ITS sequences, and the results disagreed in some remarkable features. Here we compared the ITS sequences of the mem- bers of Bambusa s. l., the genera Dendrocalamus, Dinochloa, Gigantochloa, Guadua, Melocalamus, Monocladus, Oxytenan- thera, Thyrsostachys, Pleioblastus, Pseudosasa and Schizostachyum. We have reanalysed the ITS sequences used by different research teams to reveal the underlying patterns of their different results. After excluding the sequences suspected to repre- sent paralogous loci, a phylogenetic analysis of the subtribe Bambusinae species were performed using maximum parsimony and maximum-likelihood methods. The implications of the findings are discussed. The risk of incorporating ITS paralogues in plant evolutionary studies that can distort the phylogenetic signal should caution molecular systematists. [Song H.-X., Gao S.-P., Jiang M.-Y., Liu G.-L., Yu X.-F. -
5.00 AMERICAN BAMBOO SOCIETY Bamboo Species Source List No
$5.00 AMERICAN BAMBOO SOCIETY Bamboo Species Source List No. 30 Spring 2010 This is the thirtieth year that the American Bamboo Society Several existing cultivar names are not fully in accord with (ABS) has compiled a Source List of bamboo plants and requirements for naming cultivars. In the interests of products. The List includes more than 450 kinds (species, nomenclature stability, conflicts such as these are overlooked subspecies, varieties, and cultivars) of bamboo available in to allow continued use of familiar names rather than the the US and Canada, and many bamboo-related products. creation of new ones. The Source List editors reserve the right to continue recognizing widely used names that may The ABS produces the Source List as a public service. It is not be fully in accord with the International Code of published on the ABS website: www.AmericanBamboo.org. Nomenclature for Cultivated Plants (ICNCP) and to Paper copies are sent to all ABS members and can also be recognize identical cultivar names in different species of the ordered from ABS for $5.00 postpaid. Some ABS chapters same genus as long as the species is stated. and listed vendors also sell the Source List. Please see page 3 for ordering information and pages 54 and following for Many new bamboo cultivars still require naming, more information about the American Bamboo Society, its description, and formal publication. Growers with new chapters, and membership application. cultivars should consider publishing articles in the ABS magazine, “Bamboo.” Among other requirements, keep in The vendor sources for plants, products, and services are mind that new cultivars must satisfy three criteria: compiled annually from information supplied by the distinctiveness, uniformity, and stability. -
VOLUME 5 Biology and Taxonomy
VOLUME 5 Biology and Taxonomy Table of Contents Preface 1 Cyanogenic Glycosides in Bamboo Plants Grown in Manipur, India................................................................ 2 The First Report of Flowering and Fruiting Phenomenon of Melocanna baccifera in Nepal........................ 13 Species Relationships in Dendrocalamus Inferred from AFLP Fingerprints .................................................. 27 Flowering gene expression in the life history of two mass-flowered bamboos, Phyllostachys meyeri and Shibataea chinensis (Poaceae: Bambusoideae)............................................................................... 41 Relationships between Phuphanochloa (Bambuseae, Bambusoideae, Poaceae) and its related genera ......... 55 Evaluation of the Polymorphic of Microsatellites Markers in Guadua angustifolia (Poaceae: Bambusoideae) ......................................................................................................................................... 64 Occurrence of filamentous fungi on Brazilian giant bamboo............................................................................. 80 Consideration of the flowering periodicity of Melocanna baccifera through past records and recent flowering with a 48-year interval........................................................................................................... 90 Gregarious flowering of Melocanna baccifera around north east India Extraction of the flowering event by using satellite image data ...................................................................................................... -
Addis Ababa University Addis Ababa Ethiopia July, 2020
Phylogenetic Relationships among Indigenous and Introduced Bamboo Species and Genetic Diversity Study of Ethiopian Lowland Bamboo [Oxytenanthera abyssinica (A. Rich.) Munro] Using cpDNA Genes ( matK , ndhF and rps16 ) and ISSR Markers Oumer Abdie Oumer Addis Ababa University Addis Ababa Ethiopia July, 2020 Phylogenetic Relationships among Indigenous and Introduced Bamboo Species and Genetic Diversity Study of Ethiopian Lowland Bamboo [Oxytenanthera abyssinica (A. Rich.) Munro] Using cpDNA Genes ( matK , ndhF and rps16 ) and ISSR Markers Oumer Abdie Oumer A Dissertation Submitted to Department of Microbial, Cellular and Molecular Biology in Fulfillment of the Requirements for the Degree of Doctor of Philosophy in Biology (Applied Genetics) Addis Ababa University Addis Ababa Ethiopia July, 2020 DECLARATION I declare that this Dissertation entitled “Phylogenetic Relationships among Indigenous and Introduced Bamboo Species and Genetic Diversity Study of Ethiopian Lowland Bamboo [Oxytenanthera abyssinica (A. Rich.) Munro] Using cpDNA Genes ( matK , ndhF and rps16 ) and ISSR Markers” submitted for the Degree of Doctor of Philosophy (PhD) in Biology (Applied Genetics) to the School of Graduate Studies, Addis Ababa University, is my original work and its composition has never been submitted elsewhere for any other award. All sources of materials used for the Dissertation have been duly acknowledged. Name: Oumer Abdie Signature: . Date: 20- July-2020 . i ACKNOWLEDGMENT .( ْٱﻟ َﺤ ْﻤﺪ ُ ِ ﱠ @ ِ َ ﺭ ِّ ﺏ ْٱﻟ َٰﻌ َﻠ ِﻤ َﻴﻦ ) First and for most, I would like to thank the Almighty I am highly indebted to eIpress my deepest and genuine appreciation and than.s to my supervisors0 the late Dr. Jifle Dagne, Dr. Tileye Feyissa and Dr. -
Somatic Embryogenesis of Bamboo from Root Tip Explants M.A
J. Bangladesh Agril. Univ. 5(1): 75-79, 2007 ISSN 1810-3030 Somatic embryogenesis of bamboo from root tip explants M.A. Karim, T.K. Ghoshl and M.S. Rahman Department of Crop Botany, Bangladesh Agricultural University, Mymensingh-2202, Bangladesh, 'Department of Agricultural Botany, PSTU Abstract With a view to develop and establish- a protocol for rapid micropropagation of bamboo, root tip explants of Bambusa tulda were used. Root tip explants of Bambusa tulda were cultured in MS medium supplemented with different concentrations and combinations of 2,4-D and BAP. 2,4-D at 4 mgl.:1 in combination with BAP at 3 mgt:1 produced calli from root tip explants after 15 days of culture. Subsequently the calli were subcultured in the same medium containing different concentrations and combinations of 2,4-D and BAP. Use of 2,4-D at 3 mgl.:1 and BAP at 4 mg1:1 showed better performance than others. Green shoots were observed after 15 days of subculture and subsequent growth and development were also better in the same combination. After regeneration of shoots a rapid growth rate (1.508 mm day') was observed at 3 mgL.:1 2,4-D and 4 mg1:1 BAP. The developed shoots from root tip explants were then transferred to the same medium containing Indole acetic acid (IAA; 1mgL-1)for rooting. Rooting was absent in that medium. Keywords: Bamboo, Root tip explants and Somatic embryogenesis Introduction Bamboos are tall, perennial and arborescent grasses of Poaceae family. Normally bamboos flower once in its lifecycle and die thereafter. -
Leaf Shape Influences the Scaling of Leaf Dry Mass Vs. Area: a Test Case Using Bamboos Shuyan Lin, Karl J
Leaf shape influences the scaling of leaf dry mass vs. area: a test case using bamboos Shuyan Lin, Karl J. Niklas, Yawen Wan, Dirk Hölscher, Cang Hui, Yulong Ding, Peijian Shi To cite this version: Shuyan Lin, Karl J. Niklas, Yawen Wan, Dirk Hölscher, Cang Hui, et al.. Leaf shape influences the scaling of leaf dry mass vs. area: a test case using bamboos. Annals of Forest Science, Springer Nature (since 2011)/EDP Science (until 2010), 2020, 77 (1), pp.11. 10.1007/s13595-019-0911-2. hal-03119618 HAL Id: hal-03119618 https://hal.archives-ouvertes.fr/hal-03119618 Submitted on 25 Jan 2021 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Annals of Forest Science (2020) 77: 11 https://doi.org/10.1007/s13595-019-0911-2 RESEARCH PAPER Leaf shape influences the scaling of leaf dry mass vs. area: a test case using bamboos Shuyan Lin1 & Karl J. Niklas2 & Yawen Wan1 & Dirk Hölscher3 & Cang Hui4,5 & Yulong Ding1 & Peijian Shi 1,3 Received: 17 July 2019 /Accepted: 12 December 2019 /Published online: 21 January 2020 # The Author(s) 2020 Abstract & Key message A highly significant and positive scaling relationship between bamboo leaf dry mass and leaf surface area was observed; leaf shape (here, represented by the quotient of leaf width and length) had a significant influence on the scaling exponent of leaf dry mass vs. -
Genetic Structure and Differentiation in Dendrocalamus Sinicus (Poaceae
www.nature.com/scientificreports OPEN Genetic structure and diferentiation in Dendrocalamus sinicus (Poaceae: Bambusoideae) populations provide Received: 24 October 2016 Accepted: 2 November 2018 insight into evolutionary history and Published: xx xx xxxx speciation of woody bamboos Jun Bo Yang1,2, Yu Ran Dong1, Khoon Meng Wong3, Zhi Jia Gu1,2, Han Qi Yang1 & De Zhu Li2 Evolutionary processes, speciation in woody bamboos are presently little understood. Here we used Dendrocalamus sinicus Chia & J.L. Sun as a model species to investigate dispersal or vicariance speciation in woody bamboos. Variation in three chloroplast DNA (cpDNA) fragments and eight simple sequence repeat markers (SSR) among 232 individuals sampled from 18 populations across the known geographic range of D. sinicus was surveyed. D. sinicus populations exhibited a high level of genetic diferentiation which divided them into two groups that are consistent with diferent culm types. Eleven haplotypes and two lineages (Straight-culm and Sinuous-culm lineages) were identifed from phylogenetic analyses, and a strong phylogeographic structure across the distribution range was found. The demographic and spatial expansion times of the Straight-culm lineage were calculated as 11.3 Kya and 20.8 Kya, respectively. The populations of D. sinicus had experienced dispersal and long-term isolation, although this trace was diluted by contemporary gene fow revealed by SSR data. Our results provide an phylogeographic insight to better understand the speciation processes of woody bamboos. Te biggest grasses in the world, bamboos belong to the subfamily Bambusoideae of the Poaceae, and include some 115 genera with more than 1400 species1,2. Tese taxa are naturally distributed in all continents except Europe and Antarctica, and their centers of species diversity are the tropical and subtropical regions of Asia, Africa and South America2. -
VOLUME 5 Biology and Taxonomy
VOLUME 5 Biology and Taxonomy Table of Contents Preface 1 Cyanogenic Glycosides in Bamboo Plants Grown in Manipur, India................................................................ 2 The First Report of Flowering and Fruiting Phenomenon of Melocanna baccifera in Nepal........................ 13 Species Relationships in Dendrocalamus Inferred from AFLP Fingerprints .................................................. 27 Flowering gene expression in the life history of two mass-flowered bamboos, Phyllostachys meyeri and Shibataea chinensis (Poaceae: Bambusoideae)............................................................................... 41 Relationships between Phuphanochloa (Bambuseae, Bambusoideae, Poaceae) and its related genera ......... 55 Evaluation of the Polymorphic of Microsatellites Markers in Guadua angustifolia (Poaceae: Bambusoideae) ......................................................................................................................................... 64 Occurrence of filamentous fungi on Brazilian giant bamboo............................................................................. 80 Consideration of the flowering periodicity of Melocanna baccifera through past records and recent flowering with a 48-year interval........................................................................................................... 90 Gregarious flowering of Melocanna baccifera around north east India Extraction of the flowering event by using satellite image data ...................................................................................................... -
Bamboo Species Source List No. 35 Spring 2015
$5.00 AMERICAN BAMBOO SOCIETY Bamboo Species Source List No. 35 Spring 2015 This is the thirty-fifth year that the American Bamboo Several existing cultivar names are not fully in accord with Society (ABS) has compiled a Source List of bamboo plants requirements for naming cultivars. In the interests of and products. The List includes more than 510 kinds nomenclature stability, conflicts such as these are overlooked (species, subspecies, varieties, and cultivars) of bamboo to allow continued use of familiar names rather than the available in the US and Canada, and many bamboo-related creation of new ones. The Source List editors reserve the products. right to continue recognizing widely used names that may not be fully in accord with the International Code of The ABS produces the Source List as a public service. It is Nomenclature for Cultivated Plants (ICNCP) and to published on the ABS website: www.Bamboo.org . Copies are recognize identical cultivar names in different species of the sent to all ABS members and can also be ordered from ABS same genus as long as the species is stated. for $5.00 postpaid. Some ABS chapters and listed vendors also sell the Source List. Please see page 3 for ordering Many new bamboo cultivars still require naming, description, information and pages 54 and following for more information and formal publication. Growers with new cultivars should about the American Bamboo Society, its chapters, and consider publishing articles in the ABS magazine, membership application. “Bamboo.” Among other requirements, keep in mind that new cultivars must satisfy three criteria: distinctiveness, The vendor sources for plants, products, and services are uniformity, and stability. -
Bambusa Beecheyana (Beechey's Bamboo, Silk4ball Bamboo) ALL ZONES Answer Score
Assessment date 12 February 2015 Bambusa beecheyana (Beechey's bamboo, silk4ball bamboo) ALL ZONES Answer Score 1.01 Is the species highly domesticated? n 0 1.02 Has the species become naturalised where grown? 1.03 Does the species have weedy races? 2.01 Species suited to Florida's USDA climate zones (0-low; 1-intermediate; 2-high) 2 North Zone: suited to Zones 8, 9 Central Zone: suited to Zones 9, 10 South Zone: suited to Zone 10 2.02 Quality of climate match data (0-low; 1-intermediate; 2-high) 2 2.03 Broad climate suitability (environmental versatility) n 0 2.04 Native or naturalized in habitats with periodic inundation y North Zone: mean annual precipitation 50-70 inches Central Zone: mean annual precipitation 40-60 inches South Zone: mean annual precipitation 40-60 inches 1 2.05 Does the species have a history of repeated introductions outside its natural range? y 3.01 Naturalized beyond native range n -2 3.02 Garden/amenity/disturbance weed 3.03 Weed of agriculture n 0 3.04 Environmental weed n 0 3.05 Congeneric weed y 2 4.01 Produces spines, thorns or burrs n 0 4.02 Allelopathic n 0 4.03 Parasitic n 0 4.04 Unpalatable to grazing animals 4.05 Toxic to animals 4.06 Host for recognised pests and pathogens y 1 4.07 Causes allergies or is otherwise toxic to humans n 0 4.08 Creates a fire hazard in natural ecosystems 4.09 Is a shade tolerant plant at some stage of its life cycle n 0 4.10 Grows on infertile soils (oligotrophic, limerock, or excessively draining soils). -
A Thesis Submitted to the College of Graduate Studies and Research In
A PHYLOGENETIC STUDY OF DANTHONIA DC. (POACEAE) IN NORTH AMERICA A thesis submitted to the College of Graduate Studies and Research in partial fulfillment of the requirements for the degree of Master of Science in the Department of Biology, University of Saskatchewan Saskatoon, Saskatchewan, Canada By Elizabeth Reimer © Elizabeth Reimer, February 2006 All rights reserved PERMISSION TO USE In presenting this thesis in partial fulfillment of the requirements for a Postgraduate degree from the University of Saskatchewan, I agree that the Libraries of this University may make it freely available for inspection. I further agree that permission for copying of this thesis in any manner, in whole or in part, for scholarly purposes may be granted by the professor or professors who supervised my thesis work or, in their absence, by the Head of the Department of the Dean of the College in which my thesis work was done. It is understood that any copying, publication, or use of this thesis or parts thereof for financial gain shall not be allowed without my written permission. It is also understood that due recognition shall be given to me and to the University of Saskatchewan in any scholarly use which may be made of any material in my thesis. Requests for permission to copy or to make use of other material in this thesis in whole or in part should be addressed to: Head of the Department of Biology University of Saskatchewan 112 Science Place Saskatoon, Saskatchewan S7N 5E2 i ABSTRACT The Danthonioideae (Poaceae) has been the focus of several systematic studies.