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Your current stock: Family Scientific Name Common Name African Cichlids Anomalochromis thomasi African Butterfly Cichlid African Cichlids Astatotilapia (Haplochromis) burtoni African Cichlids Aulonocara sp dragon blood African Cichlids Copadichromis borleyi 'red kadango' African Cichlids Cynotilapia afra 'lion cove' African Cichlids Cynotilapia afra cobwe African Cichlids Cynotilapia afra jalo reef African Cichlids Cyphotilapia frontosa African Cichlids Cyprichromis leptosoma African Cichlids Cyrtocara moorii Malawi Blue Dolphin African Cichlids Dimidiochromis compressiceps Malawi Eye Biter African Cichlids Fossorochromis rostratus Fosso Cichlid African Cichlids Hemichromis lifalili Blood Red Jewel Cichlid African Cichlids Iodotropheus sprengerae Rusty Cichlid African Cichlids Julidochromis marlieri African Cichlids Julidochromis transcriptus "Kissi" Masked Julie African Cichlids Labeotropheus trewavasae "Thumbi West" Trewavas' Cichlid "Thumbi West" African Cichlids Labidochromis caeruleus "yellow" Yellow Labidochromis African Cichlids Labidochromis perlmutt African Cichlids Labidochromis sp.'hongi red top' African Cichlids Lamprologus congoensis African Cichlids Maylandia callainos Cobalt Blue Zebra African Cichlids Maylandia greshakei Pseudotropheus "Ice blue" African Cichlids Melanochromis auratus African Cichlids Melanochromis johanni African Cichlids Neolamprologus brichardi Fairy Cichlid African Cichlids Neolamprologus tretocephalus Five-bar Cichlid African Cichlids Nimbochromis(Cyrtocara) venustus Ophthalmotilapia(Ophthalmochromis) African Cichlids ventralis African Cichlids Otopharynx lithobates African Cichlids Paretroplus menarambo Pinstripe Damba African Cichlids Pelvicachromis pulcher Kribensis African Cichlids Pelvicachromis taeniatus African Cichlids Pelvicachromis taeniatus 'Moliwe' African Cichlids Placidochromis milomo Super VC10 African Cichlids Protomelas sp "Steveni Taiwan" Protomelas sp "Taiwan Reef" African Cichlids Protomelas Taeniolatus Red Empress Cichlid African Cichlids Pseudotropheus acei Acei Cichlid African Cichlids Pseudotropheus acei 'yellow tail' Acei Cichlid African Cichlids Pseudotropheus demasoni Dwarf Mbuna African Cichlids Pseudotropheus elongatus "mpanga" African Cichlids Pseudotropheus flavus African Cichlids Pseudotropheus lombardoi Kennyi Cichlid African Cichlids Pseudotropheus saulosi African Cichlids Pseudotropheus sp.'red zebra' African Cichlids Pseudotropheus tropheops tropheops African Cichlids Sciaenochromis ahli Electric Blue Cichlid African Cichlids Thysochromis ansorgii Five-Spot Cichlid Algae Shrimps Caridina japonica Amano shrimp Anabantoids Anabas testudineus Climbing Perch Anabantoids Betta splendens Assorted Male Siamese Fighting Fish Anabantoids Betta splendens Halfmoon siamese fighter Anabantoids Betta splendens blue Siamese Fighting Fish Anabantoids Betta splendens red Siamese Fighting Fish Anabantoids Betta splendens var. Dumbo Ear Fighting Fish (male) Anabantoids Betta splendens – crowntail Anabantoids Colisa labiosa Thick-Lipped Gourami Anabantoids Colisa lalia Dwarf Gourami - Blue Anabantoids Colisa lalia Dwarf Gourami - Neon Anabantoids Colisa lalia Dwarf Gourami - Rainbow Anabantoids Colisa sota sp Golden Honey Gourami Anabantoids Ctenopoma acutirostre Leopard Bushfish Anabantoids Microctenopoma ansorgii Ornate Ctenopoma Anabantoids Trichogaster chuna Red Robin Gourami Anabantoids Trichogaster leeri Pearl Gourami Anabantoids Trichogaster trichopterus - opaline Opaline Gourami Anabantoids Trichogaster trichopterus blue Three Spot Gourami - Blue Anabantoids Trichogaster trichopterus gold Three Spot Gourami - Gold Barbs Altolamprologus Compressiceps Barbs Barbodes schwanenfeldi Tinfoil Barb Barbs Barbus (Puntius) everetti Clown Barb Barbs Barbus lateristriga Spanner Barb Barbs Barbus(Puntius) denisonii Denison Barb Barbs Barbus(Puntius) lineatus Striped Barb Barbs Barbus(Puntius) pallidus Golden Barb Barbs Barbus(Puntius) rhombeus Barbs Dawkinsia arulius Longfin Barb Barbs Puntius 'Odessa' 'Odessa' Barb Barbs Puntius conchonius Rosy Barb Barbs Puntius nigrofasciatus Black Ruby Barb Barbs Puntius oligolepis Checker Barb Barbs Puntius pentazona pentazona Five Banded Barb Barbs Puntius tetrazona Tiger Barb Barbs Puntius tetrazona 'albino' Albino Tiger Barb Barbs Puntius titteya Cherry Barb Catfish Anaspidoglanis macrostoma Dwarf Giraffe Catfish Catfish Ancistrus dolichopterus Bristlenose Catfish Catfish Ancistrus dolichopterus (albino/gold) Bristlenose Catfish Catfish Aspidoras sp. C125 Catfish Baryancistrus demantoides Green Phantom Plec, L200 Catfish Brochis splendens (coeruleus) Emerald Catfish Catfish Farlowella acus Twig Catfish Catfish Hypoptopoma gulare Catfish Hypoptopoma sp. Giant 'Otocinclus' Catfish Kryptopterus bicirrhis Glass Catfish Catfish Otocinclus vittatus Dwarf Suckermouth Catfish Pimelodus pictus Angelicus Pimelodus Catfish Platydoras costatus Humbug Catfish/ Striped Dora Catfish Rineloricaria lanceolata Catfish Synodontis decorus Clown Catfish Catfish Synodontis eupterus Featherfin Synodontis Catfish Synodontis flavitaeniatus Pyjama Cat Catfish Synodontis nigriventris Upside-Down Catfish Catfish Synodontis petricola Characins Abramites hypselonotus Headstander Characins Anostomus anostomus Striped Headstander Characins Anostomus ternetzi Red Mouth Headstander Characins Characidium fasciatum Characins Chilodus punctatus Spotted Headstander Characins Distichodus sexfasciatus Six-banded Distichodus Characins Gymnocorymbus ternetzi Black Widow Tetra Characins Hasemania nana Silvertip Tetra Characins Hemigrammus bleheri Red nosed tetra Characins Hemigrammus erythrozonus Glowlight Tetra Characins Hemigrammus ocellifer Head and Tail Light Tetra Characins Hemigrammus rhodostomus Rummy-Nose Tetra Characins Hoplias malabaricus Wolf Fish Characins Hyphessobrycon amandae Ember Tetra Characins Hyphessobrycon anisitsi Buenos Aires Tetra Characins Hyphessobrycon bentosi 'white fin' Ornate Tetra "white fin" Characins Hyphessobrycon eos Dawn Tetra Hyphessobrycon erythrostigma Characins Bleeding Heart Tetra (rubrostigma) Characins Hyphessobrycon herbertaxelrodi Black Neon Tetra Characins Hyphessobrycon megalopterus Black Phantom Tetra Characins Hyphessobrycon pulchripinnis Lemon Tetra Characins Hyphessobrycon rosaceus Rosy Tetra Characins Hyphessobrycon roseus Red-Tailed Phantom Tetra Characins Hyphessobrycon sweglesi Red Phantom Tetra Characins Inpaichthys kerri Blue Emperor Tetra Characins Metynnis argenteus Silver Dollar Characins Moenkhausia pittieri Diamond Tetra Characins Myloplus rubripinnis Red Hook Myleus Characins Nannostomus beckfordi Golden Pencilfish Characins Nannostomus eques Hockeystick Pencilfish Characins Nematobrycon palmeri Emperor Tetra Characins Paracheirodon axelrodi Cardinal Tetra Characins Paracheirodon innesi Neon Tetra Characins Paracheirodon innesi var. Diamond Head Neon Tetra Characins Phenacogrammus interruptus Congo Tetra Characins Prionobrama filigera Glass Bloodfin Characins Pristella maxillaris (riddlei) X-Ray Tetra Characins Semaprochilodus taeniurus Flagtailed Characin Corydoras Corydoras aeneus Bronze Catfish Corydoras Corydoras aeneus (albino) Albino Bronze Catfish Corydoras Corydoras agassizii Spotted Corydoras Corydoras Corydoras arcuatus Skunk Corydoras Corydoras Corydoras axelrodi Axelrod's Corydoras Corydoras Corydoras duplicareus Corydoras Corydoras elegans Elegant Coryodoras Corydoras Corydoras habrosus Salt-and-pepper Pygmy Corydoras Corydoras Corydoras julii Leopard Corydoras Corydoras Corydoras kanei C026 Corydoras Corydoras loretoensis Loreto Corydoras Corydoras Corydoras melanistius Blue-spotted Corydoras Corydoras Corydoras metae Bandit Corydoras Corydoras Corydoras paleatus Peppered Corydorus Corydoras Corydoras paleatus (albino) Albino Corydoras Corydoras Corydoras panda Panda Cory Corydoras Corydoras punctatus C012 Corydoras Corydoras pygmaeus Corydoras Corydoras schwartzi Schwartz's Corydoras Corydoras sp. cf. aeneus "Peru orange Corydoras Orange Stripe Corydoras stripe" Corydoras Corydoras sp. cf. aeneus (black) Black Corydoras Corydoras Corydoras sterbai Sterba's Corydoras Corydoras Corydoras trilineatus Three-line Corydoras Fan Shrimps Atya gabonensis Armoured shrimp Fan Shrimps Atyopsis moluccensis Rock shrimp Killifish Aplocheilichthys normani Norman's Lampeye Killifish Epiplatys annulatus Rocket Panchax L Numbers Baryancistrus xanthellus Gold Nugget Pleco L Numbers Hemiancistrus sp. L128 Blue Phantom Plec L Numbers Hypancistrus sp. L333 L Numbers L 137 cochliodon sp. Violet Pleco L Numbers L 168 Zonancistrus brachyurus Butterfly Peckoltia L Numbers L 187 chaetostoma pearsei White Spot Bulldog Pleco L Numbers L 191 panaque sp. Dull Eyed Royal Pleco L Numbers L001 Glyptoperichthys joselimaianus L Numbers L006 Peckoltia oligospila L Numbers L014 Scobinancistrus aureatus L Numbers L028 Hypancistrus sp. L Numbers L046 Hypancistrus zebra L Numbers L048 Scobinancistrus cf. pariolispos L Numbers L066 Hypancistrus sp. L Numbers L076 Peckoltia sp. L Numbers L091 Leporacanthicus triactis L Numbers L103 Peckoltia sp. L Numbers L114 Pseudacanthicus leopardus L Numbers L136 Hypancistrus sp. L Numbers L144 blue eyed golden bristlenose plecs L Numbers L190 Panaque nigrolineatus L Numbers L205 Peckoltia sp. L Numbers L226 Panaque changae L Numbers L240 Leporacanthicus cf. galaxias L Numbers L259 pseudancistrus sp. 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    Red List of Bangladesh Volume 1: Summary Chief National Technical Expert Mohammad Ali Reza Khan Technical Coordinator Mohammad Shahad Mahabub Chowdhury IUCN, International Union for Conservation of Nature Bangladesh Country Office 2015 i The designation of geographical entitles in this book and the presentation of the material, do not imply the expression of any opinion whatsoever on the part of IUCN, International Union for Conservation of Nature concerning the legal status of any country, territory, administration, or concerning the delimitation of its frontiers or boundaries. The biodiversity database and views expressed in this publication are not necessarily reflect those of IUCN, Bangladesh Forest Department and The World Bank. This publication has been made possible because of the funding received from The World Bank through Bangladesh Forest Department to implement the subproject entitled ‘Updating Species Red List of Bangladesh’ under the ‘Strengthening Regional Cooperation for Wildlife Protection (SRCWP)’ Project. Published by: IUCN Bangladesh Country Office Copyright: © 2015 Bangladesh Forest Department and IUCN, International Union for Conservation of Nature and Natural Resources Reproduction of this publication for educational or other non-commercial purposes is authorized without prior written permission from the copyright holders, provided the source is fully acknowledged. Reproduction of this publication for resale or other commercial purposes is prohibited without prior written permission of the copyright holders. Citation: Of this volume IUCN Bangladesh. 2015. Red List of Bangladesh Volume 1: Summary. IUCN, International Union for Conservation of Nature, Bangladesh Country Office, Dhaka, Bangladesh, pp. xvi+122. ISBN: 978-984-34-0733-7 Publication Assistant: Sheikh Asaduzzaman Design and Printed by: Progressive Printers Pvt.
  • Genetic and Genomic Analyses Using RAD-Seq and Stacks De Novo Assembly of RAD Tags Without a Genome for Phylogenetic Analysis

    Genetic and Genomic Analyses Using RAD-Seq and Stacks De Novo Assembly of RAD Tags Without a Genome for Phylogenetic Analysis

    Genetic and genomic analyses using RAD-seq and Stacks de novo assembly of RAD tags without a genome for phylogenetic analysis Instructors: Julian Catchen <[email protected]> Department of Animal Biology, University of Illinois at Urbana-Champaign William Cresko <[email protected]> Institute of Ecology and Evolution, University of Oregon Datasets and Software • Data sets - All are produced using an Illumina HiSeq 2500 sequencer • Dataset 6 (DS6) - This is a set of population genomic data from several Danio species. The dataset comprises 1 individual from each of 15 species, 13 Danios and two outgroups. These data are from McClusckey and Postlethwait, 2015. • Software - All are open source software • Stacks (http://catchenlab.life.illinois.edu/stacks/) - A set of interconnected open source programs designed initially for the de novo assembly of RAD sequences into loci for genetic maps, and extended to be used more flexibly in studies of organisms with and without a reference genome. • RAxML (http://sco.h-its.org/exelixis/web/software/raxml/index.html) - A software program written by the Exelixis Lab for the construction of maximum likelihood phylogenetic trees. !1 Exercise IV. Building a RADseq-based Phylogenetic Tree 1. In this exercise we will be working on a set of RAD-seq data taken from a number of Danio species, and two outgroups to Danio. We want to understand how these species relate to one another phylogenetically by examining variable sites between the genomes of these 15 species. The data set includes one sample per species. Our goal is to process the raw RAD data and reconstruct loci shared across the species.