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Bailey CV March 2016 CURRICULUM VITAE JAKE VINCENT BAILEY Academic Rank Assistant professor in the Department of Earth Sciences, University of Minnesota – Twin Cities Graduate Faculty in Microbiology, Immunology and Cancer Biology (MICaB), University of Minnesota – Twin Cities Education Ph.D. Geological Sciences/Geobiology, University of Southern California, 2008 B.S. Geology, cum laude and Honors College graduate, University of Arizona, 2003 Professional Training Courses NSF UNOLS Chief Scientist Training Workshop, San Diego, CA, 2012 Joint EU-US Theoretical and Practical Training Course in Marine Bioinformatics, Bremen, Germany, 2012 Microbial Diversity Summer Course, Marine Biological Laboratory at Woods Hole, MA, 2007 Agouron International Geobiology Summer Course, Wrigley Institute, CA, 2004 University of Arizona Field Geology Summer Course, 2001 Positions/Employment 2010-present: Assistant Professor, Dept. of Earth Sciences, Univ. of Minnesota – Twin Cities. Graduate Faculty in Microbiology, Immunology and Cancer Biology (MICaB). 2008-2009: Agouron Geobiology Postdoctoral Fellow, California Institute of Technology 2005-2008: National Science Foundation Graduate Fellow, University of Southern California 2003-2004: Graduate Teaching Assistant, University of Southern California 2002: Summer Research Intern, Lunar and Planetary Institute, NASA Johnson Space Center Current Membership in Professional Organizations Geological Society of America (GSA) American Society for Microbiology (ASM) European Association of Geochemistry Geochemical Society Society for the Advancement of Chicanos and Native Americans in Science (SACNAS) Academic Awards, Fellowships and Honors UMN Guillermo E. Borja Career Development Award, 2016 Simons Foundation Early Career Investigator in Marine Microbial Ecology and Evolution, 2015 National Academy of Sciences Kavli Frontiers of Science Fellow, 2014 Alfred P. Sloan Foundation Research Fellow, Ocean Sciences, 2014 UMN Graduate and Professional Student Assembly Outstanding Advisor Award, 2013 UMN McKnight Land Grant Professorship, 2013-2015 National Science Foundation CAREER Grant, 2011-2016 Agouron Institute Geobiology Postdoctoral Fellowship, 2008-2009 National Science Foundation Graduate Research Fellowship, 2005-2008 Research Grant and Award Funding - Received while at the University of Minnesota Investigator status: Principal Investigator MnDRIVE Research Seed Grant: “Leveraging biological sulfur production for sustainable sulfate removal from Minnesota mine waters.” 2015-2016, Current $65,000 Investigator status: Principal Investigator University of Minnesota OVPR – Minnesota Futures Grant “Bacterial polyphosphate metabolism: an unrecognized contributor to dental diseases?” 2015-2017, Current $250,000 Investigator status: Principal Investigator Simons Foundation Early Career Investigator in Marine Microbial Ecology and Evolution “Investigating the microbiome of the largest known bacteria.” 2015-2018, Current $537,796 Investigator status: Principal Investigator NASA Exobiology “Investigating the dissolution of carbonate rocks by marine lithotrophic bacteria: from biogeochemistry to biosignatures.” 2014-2017, Current $421,150 Investigator status: Awardee Alfred P. Sloan Foundation Research Fellowship – Ocean Sciences 2014-2016, Current $50,000 Investigator status: Co-Investigator; PI is Lawrence Edwards National Science Foundation MRI: Acquisition of a Multi-collector Inductively-coupled Plasma Mass Spectrometer for Research and Education in the Earth and Environmental Sciences 2013-2016, Current $905,275 Investigator status: Awardee McKnight Land Grant Professorship 2013-2015, Completed $97,500 Investigator status: Principal Investigator National Science Foundation “CAREER: Investigating the relationship between giant sulfur bacteria and microfossil-bearing phosphorites.” 2011-2016, Current $460,000 Investigator status: Principal Investigator UMN Grant in Aid “Sequencing the genome of the largest known bacterium.” 2011-2012, Completed $20,970 Grants and Fellowships of Lab Members Received while at the University of Minnesota Fernando Medina Ferrer Fulbright fellowship with CONICYT (Chile) supplement 2015-Present Peter Schroedl Undergraduate Research Opportunities Program (UROP) 2015 $1,700 John Swiecichowski Undergraduate Research Opportunities Program (UROP) 2015 Completed $1,700 Gabriel Walker, Undergraduate Researcher Undergraduate Research Opportunities Program (UROP and URS) 2015 – Co-advised with Dan Jones Completed $1,700 Charles Thunder, undergraduate co-mentored with Dan Jones MnDRIVE North Star STEM undergraduate research award 2015-2016 Completed $5,000 Chris Crosby, Graduate student UMN Doctoral Dissertation Fellowship 2014-15 Completed $23,000 An An Hua, Undergraduate Researcher Undergraduate Research Opportunities Program (UROP) 2015 – Co-advised with Dan Jones Completed $1,700 Cindy Frickle, Undergraduate Researcher GSA Limnogeology Division Kerry Kelts Travel and Research Awards 2014, Completed $1,600 Laura Vietti, Graduate student, Co-advised with David Fox UMN Doctoral Dissertation Fellowship 2013-14, Completed $23,000 Beverly Flood, Postdoctoral Researcher National Science Foundation, Ocean Sciences Postdoctoral Research Fellowship 2012-2014, Completed $170,000 Gabriel Walker, Undergraduate Researcher Undergraduate research scholarship (URS) 2014, Completed $1,400 Chris Crosby, Graduate student Society for the Advancement of Chicanos and Native Americans in Sciences travel grants 2012-2013, Completed ~$1200 Ben Harrison, Postdoctoral Researcher NSF Center for Dark Energy Biosphere Investigations Postdoctoral Scholar Fellowship 2012-2014, Completed $110,000 Dan Jones, Postdoctoral Researcher Agouron Institute Geobiology Postdoctoral Fellowship 2011-2013, Completed $112,000 Elizabeth Ricci, Undergraduate Researcher Howard Hughes Medical Institute Undergraduate Research Project 2011, Completed $1,250 Cassandra Ho, Undergraduate Researcher Howard Hughes Medical Institute Undergraduate Research Project 2011, Completed $1,250 Chris Crosby, Graduate student UMN Graduate School Fellowship 2014-15, Completed $27,500 Cindy Frickle, Undergraduate Researcher Undergraduate Research Opportunities Program (UROP) 2010, Completed $1,700 Graduate student departmental awards include Zoltai Fellowship (Frickle, 2014), Frederick Swain Fellowship (Crosby 2013), Forrest Fellowship (Crosby 2013), Richard Clarence Dennis Fellowship (Fall Crosby 2012), Francis Gibson Fellowship (Crosby 2011). Journal articles (*indicates advisee or lab-affiliated postdoctoral author; §indicates authors contributed equally; Note: the PI is traditionally associated with the final author position in biology journals, while the PI is commonly listed as second author in the earth sciences journals. Refereed Journal Articles 24. Winkel et al. (In review) Single-cell sequencing of Thiomargarita reveals genomic flexibility for adaptation to dynamic redox condition. Frontiers in Extreme Microbiology, 23. Flood, B.E., Fliss, P., Jones, D.S., Dick, G., Jain, S. Kaster, A.K., Winkel, M. Muβmann, M. Bailey, J.V., (2016) Single-Cell (Meta-)Genomics of a Dimorphic Candidatus Thiomargarita nelsonii Reveals Genomic Plasticity. Frontiers in Extreme Microbiology. 7:603. doi: 10.3389/fmicb.2016.00603 22. Harrison, B.K.*, Myrbo, A., Flood, B.E.*, Bailey, J.V. (2015) Recovery of subannual microbial community information from individual sedimentary laminae using a freeze-coring approach. Limnology and Oceanography, DOI: 10.1002/lno.10250 21. Jones, D.S.*, Flood, B.E. *, Bailey, J.V. (2015) Metatranscriptomic insights into polyphosphate metabolism in marine sediments. ISME Journal. DOI:10.1038/ismej.2015.169 20. Stevens, E.N.*, Bailey, J.V., Flood, B.E.*, Jones, D.S.*, Gilhooly III, W.P., Joye, S.B., Teske, A., Mason, O.U., (2015) Barite encrustation of benthic sulfur-oxidizing bacteria at a marine cold seep. Geobiology. DOI: 10.1111/gbi.12154 19. Flood, B.E.*, Jones, D.S.*, Bailey, J.V., (2015) The complete genome of Sedimenticola thiotaurini strain SIP-G1, a polyphosphate and polyhydroxyalkanoate-accumulating sulfur- oxidizing gammaproteobacterium isolated from salt marsh sediments. ASM Genome Announcements. 3(3), doi: 10.1128/genomeA.00671-15. 18. Mason, O.U. §, Case, D.H.§, Naehr, T.H., Lee, R.W., Thomas, R.B., Bailey, J.V., Orphan, V.J., (2015) Comparison of archaeal and bacterial diversity in methane seep carbonate nodules and host sediments, Eel River Basin and Hydrate Ridge, USA. Microbial Ecology; DOI 10.1007/s00248-015-0615-6 17. Flood, B.E. *, Bailey, J.V., Jones, D.S.*, (2015) Sedimenticola thiotaurini sp. nov., a sulfide- oxidizing bacterium isolated from saltmarsh sediments, emended description of the genus Sedimenticola and holotype strain Sedimenticola selenatireducens. International Journal of Systematic and Evolutionary Microbiology. doi: 10.1099/ijs.0.000295. 16. Jones, D.S.*, Flood, B.E. *, Bailey, J.V. (2015) Metatranscriptomic analysis of diminutive Thiomargarita-like bacteria (“Candidatus Thiopilula spp.”) from abyssal cold seeps of the Barbados Accretionary Prism. Applied and Environmental Microbiology. v. 81, p.3142–3156. 15. Vietti, L.A.*, Bailey, J.V., Fox, D.L., and Rogers, R.R., (2015) Rapid formation of framboidal sulfides on bone surfaces from a simulated marine carcass fall. Palaios. v. 30, p. 327-334. 14. Crosby, C.H.*, Bailey, J.V., and Sharma, M., (2014), Fossil evidence of iron-oxidizing chemolithotrophy linked to phosphogenesis in the wake of the Great Oxidation Event. Geology, v. 42, p. 1015-1018. 13. Flood, B.E*§, Bailey,
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