CURRICULUM VITAE

JAKE VINCENT BAILEY

Academic Rank Assistant professor in the Department of Earth Sciences, University of Minnesota – Twin Cities Graduate Faculty in Microbiology, Immunology and Cancer Biology (MICaB), University of Minnesota – Twin Cities

Education Ph.D. Geological Sciences/Geobiology, University of Southern California, 2008 B.S. Geology, cum laude and Honors College graduate, University of Arizona, 2003

Professional Training Courses NSF UNOLS Chief Scientist Training Workshop, San Diego, CA, 2012 Joint EU-US Theoretical and Practical Training Course in Marine Bioinformatics, Bremen, Germany, 2012 Microbial Diversity Summer Course, Marine Biological Laboratory at Woods Hole, MA, 2007 Agouron International Geobiology Summer Course, Wrigley Institute, CA, 2004 University of Arizona Field Geology Summer Course, 2001

Positions/Employment 2010-present: Assistant Professor, Dept. of Earth Sciences, Univ. of Minnesota – Twin Cities. Graduate Faculty in Microbiology, Immunology and Cancer Biology (MICaB). 2008-2009: Agouron Geobiology Postdoctoral Fellow, California Institute of Technology 2005-2008: National Science Foundation Graduate Fellow, University of Southern California 2003-2004: Graduate Teaching Assistant, University of Southern California 2002: Summer Research Intern, Lunar and Planetary Institute, NASA Johnson Space Center

Current Membership in Professional Organizations Geological Society of America (GSA) American Society for Microbiology (ASM) European Association of Geochemistry Geochemical Society Society for the Advancement of Chicanos and Native Americans in Science (SACNAS)

Academic Awards, Fellowships and Honors UMN Guillermo E. Borja Career Development Award, 2016 Simons Foundation Early Career Investigator in Marine Microbial Ecology and Evolution, 2015 National Academy of Sciences Kavli Frontiers of Science Fellow, 2014 Alfred P. Sloan Foundation Research Fellow, Ocean Sciences, 2014 UMN Graduate and Professional Student Assembly Outstanding Advisor Award, 2013 UMN McKnight Land Grant Professorship, 2013-2015 National Science Foundation CAREER Grant, 2011-2016 Agouron Institute Geobiology Postdoctoral Fellowship, 2008-2009 National Science Foundation Graduate Research Fellowship, 2005-2008

Research Grant and Award Funding - Received while at the University of Minnesota

Investigator status: Principal Investigator MnDRIVE Research Seed Grant: “Leveraging biological sulfur production for sustainable sulfate removal from Minnesota mine waters.” 2015-2016, Current $65,000

Investigator status: Principal Investigator University of Minnesota OVPR – Minnesota Futures Grant “Bacterial polyphosphate metabolism: an unrecognized contributor to dental diseases?” 2015-2017, Current $250,000

Investigator status: Principal Investigator Simons Foundation Early Career Investigator in Marine Microbial Ecology and Evolution “Investigating the microbiome of the largest known bacteria.” 2015-2018, Current $537,796

Investigator status: Principal Investigator NASA Exobiology “Investigating the dissolution of carbonate rocks by marine lithotrophic bacteria: from biogeochemistry to biosignatures.” 2014-2017, Current $421,150

Investigator status: Awardee Alfred P. Sloan Foundation Research Fellowship – Ocean Sciences 2014-2016, Current $50,000

Investigator status: Co-Investigator; PI is Lawrence Edwards National Science Foundation MRI: Acquisition of a Multi-collector Inductively-coupled Plasma Mass Spectrometer for Research and Education in the Earth and Environmental Sciences 2013-2016, Current $905,275

Investigator status: Awardee McKnight Land Grant Professorship 2013-2015, Completed $97,500

Investigator status: Principal Investigator National Science Foundation “CAREER: Investigating the relationship between giant sulfur bacteria and microfossil-bearing phosphorites.” 2011-2016, Current $460,000

Investigator status: Principal Investigator UMN Grant in Aid “Sequencing the genome of the largest known bacterium.” 2011-2012, Completed $20,970

Grants and Fellowships of Lab Members Received while at the University of Minnesota

Fernando Medina Ferrer Fulbright fellowship with CONICYT (Chile) supplement 2015-Present

Peter Schroedl Undergraduate Research Opportunities Program (UROP) 2015 $1,700

John Swiecichowski Undergraduate Research Opportunities Program (UROP) 2015 Completed $1,700

Gabriel Walker, Undergraduate Researcher Undergraduate Research Opportunities Program (UROP and URS) 2015 – Co-advised with Dan Jones Completed $1,700

Charles Thunder, undergraduate co-mentored with Dan Jones MnDRIVE North Star STEM undergraduate research award 2015-2016 Completed $5,000

Chris Crosby, Graduate student UMN Doctoral Dissertation Fellowship 2014-15 Completed $23,000

An An Hua, Undergraduate Researcher Undergraduate Research Opportunities Program (UROP) 2015 – Co-advised with Dan Jones Completed $1,700

Cindy Frickle, Undergraduate Researcher GSA Limnogeology Division Kerry Kelts Travel and Research Awards 2014, Completed $1,600

Laura Vietti, Graduate student, Co-advised with David Fox UMN Doctoral Dissertation Fellowship 2013-14, Completed $23,000

Beverly Flood, Postdoctoral Researcher National Science Foundation, Ocean Sciences Postdoctoral Research Fellowship 2012-2014, Completed $170,000

Gabriel Walker, Undergraduate Researcher Undergraduate research scholarship (URS) 2014, Completed $1,400

Chris Crosby, Graduate student Society for the Advancement of Chicanos and Native Americans in Sciences travel grants 2012-2013, Completed ~$1200

Ben Harrison, Postdoctoral Researcher NSF Center for Dark Energy Biosphere Investigations Postdoctoral Scholar Fellowship 2012-2014, Completed $110,000

Dan Jones, Postdoctoral Researcher Agouron Institute Geobiology Postdoctoral Fellowship 2011-2013, Completed $112,000

Elizabeth Ricci, Undergraduate Researcher Howard Hughes Medical Institute Undergraduate Research Project 2011, Completed $1,250

Cassandra Ho, Undergraduate Researcher Howard Hughes Medical Institute Undergraduate Research Project 2011, Completed $1,250

Chris Crosby, Graduate student UMN Graduate School Fellowship 2014-15, Completed $27,500

Cindy Frickle, Undergraduate Researcher Undergraduate Research Opportunities Program (UROP) 2010, Completed $1,700

Graduate student departmental awards include Zoltai Fellowship (Frickle, 2014), Frederick Swain Fellowship (Crosby 2013), Forrest Fellowship (Crosby 2013), Richard Clarence Dennis Fellowship (Fall Crosby 2012), Francis Gibson Fellowship (Crosby 2011).

Journal articles (*indicates advisee or lab-affiliated postdoctoral author; §indicates authors contributed equally; Note: the PI is traditionally associated with the final author position in biology journals, while the PI is commonly listed as second author in the earth sciences journals.

Refereed Journal Articles

24. Winkel et al. (In review) Single-cell sequencing of Thiomargarita reveals genomic flexibility for adaptation to dynamic redox condition. Frontiers in Extreme Microbiology, 23. Flood, B.E., Fliss, P., Jones, D.S., Dick, G., Jain, S. Kaster, A.K., Winkel, M. Muβmann, M. Bailey, J.V., (2016) Single-Cell (Meta-)Genomics of a Dimorphic Candidatus Thiomargarita nelsonii Reveals Genomic Plasticity. Frontiers in Extreme Microbiology. 7:603. doi: 10.3389/fmicb.2016.00603 22. Harrison, B.K.*, Myrbo, A., Flood, B.E.*, Bailey, J.V. (2015) Recovery of subannual microbial community information from individual sedimentary laminae using a freeze-coring approach. Limnology and Oceanography, DOI: 10.1002/lno.10250 21. Jones, D.S.*, Flood, B.E. *, Bailey, J.V. (2015) Metatranscriptomic insights into polyphosphate metabolism in marine sediments. ISME Journal. DOI:10.1038/ismej.2015.169 20. Stevens, E.N.*, Bailey, J.V., Flood, B.E.*, Jones, D.S.*, Gilhooly III, W.P., Joye, S.B., Teske, A., Mason, O.U., (2015) Barite encrustation of benthic sulfur-oxidizing bacteria at a marine cold seep. Geobiology. DOI: 10.1111/gbi.12154 19. Flood, B.E.*, Jones, D.S.*, Bailey, J.V., (2015) The complete genome of Sedimenticola thiotaurini strain SIP-G1, a polyphosphate and polyhydroxyalkanoate-accumulating sulfur- oxidizing gammaproteobacterium isolated from salt marsh sediments. ASM Genome Announcements. 3(3), doi: 10.1128/genomeA.00671-15. 18. Mason, O.U. §, Case, D.H.§, Naehr, T.H., Lee, R.W., Thomas, R.B., Bailey, J.V., Orphan, V.J., (2015) Comparison of archaeal and bacterial diversity in methane seep carbonate nodules and host sediments, Eel River Basin and Hydrate Ridge, USA. Microbial Ecology; DOI 10.1007/s00248-015-0615-6 17. Flood, B.E. *, Bailey, J.V., Jones, D.S.*, (2015) Sedimenticola thiotaurini sp. nov., a sulfide- oxidizing bacterium isolated from saltmarsh sediments, emended description of the genus Sedimenticola and holotype strain Sedimenticola selenatireducens. International Journal of Systematic and Evolutionary Microbiology. doi: 10.1099/ijs.0.000295. 16. Jones, D.S.*, Flood, B.E. *, Bailey, J.V. (2015) Metatranscriptomic analysis of diminutive Thiomargarita-like bacteria (“Candidatus Thiopilula spp.”) from abyssal cold seeps of the Barbados Accretionary Prism. Applied and Environmental Microbiology. v. 81, p.3142–3156. 15. Vietti, L.A.*, Bailey, J.V., Fox, D.L., and Rogers, R.R., (2015) Rapid formation of framboidal sulfides on bone surfaces from a simulated marine carcass fall. Palaios. v. 30, p. 327-334. 14. Crosby, C.H.*, Bailey, J.V., and Sharma, M., (2014), Fossil evidence of iron-oxidizing chemolithotrophy linked to phosphogenesis in the wake of the Great Oxidation Event. Geology, v. 42, p. 1015-1018. 13. Flood, B.E*§, Bailey, J.V.§, Biddle, J.F. (2014), Horizontal gene transfer and the rock record: comparative genomics of phylogenetically-distant bacteria that induce wrinkle structure formation in modern sediments. Geobiology, v. 12, p. 119-132. doi: 10.1111/gbi.12072. 12. Salman, V., Bailey, J.V., Teske, A. (2013) Phylogenetic and morphologic complexity of giant sulphur bacteria. Antonie Van Leeuwenhoek, v. 104, p. 169-86. 11. Bailey, J.V., Corsetti, F.A., Greene, S.E., Crosby, C.H.*, Liu, P., Orphan, V.J., (2013) Filamentous sulfur bacteria preserved in modern and ancient phosphatic sediments: implications for the role of oxygen and bacteria in phosphogenesis. Geobiology, v. 11, p. 397- 405. 10. Crosby, C.H.*, Bailey, J.V., 2012, The role of microbes in the formation of modern and ancient phosphatic mineral deposits, Frontiers in Aquatic Microbiology. v. 3, p. 3-9:241. doi: 10.3389/fmicb.2012.00241 9. Cunningham, J. A., Thomas, C.-W., Bengtson, S., Marone, F., Stampanoni, M., Turner, F. R., Bailey, J. V., Raff, R. A., Raff, E. C., Donoghue, P. C. J., 2012, Experimental taphonomy of giant sulphur bacteria: implications for the interpretation of the embryo-like Ediacaran Doushantuo fossils. Proceedings of the Royal Society B – Biological Sciences, 2012, v. 279, 1857-1864. 8. Bailey, J.V., Salman, V., Rouse, G.W., Schulz-Vogt, H.N., Levin, L.A., Orphan, V.J., 2011, Dimorphism in methane seep-dwelling ecotypes of the largest known bacteria. ISME Journal, v. 5, p. 1926-1935. 7. Salman, V., Amann, R., Girnth, A-C., Polerecky, L., Bailey, J.V., Høgslund, S., Jessen, G., Pantoja, S., and Schulz-Vogt, H., 2011, A single-cell sequencing approach to the classification of large, vacuolated sulfide-oxidizing bacteria. Systematic and Applied Microbiology, v. 34, p. 243-259. 6. Bailey, J.V., Raub, T.D., Meckler, A.N., Harrison, B.K., Raub, T.M.D., Green, A.M., Orphan, V.J., 2010, Pseudofossils in relict methane seep carbonates resemble endemic microbial consortia. Palaeogeography, Palaeoclimatology, Palaeoecology. v. 285, p. 131-142. 5. Bailey, J.V., Orphan, V.J., Joye, S.B., Corsetti, F.A., 2009, Chemotrophic microbial mats and their potential for preservation in the rock record. Astrobiology, v. 9, p. 843-859. 4. Bailey, J.V., Joye, S.B., Kalanetra, K.M., Flood, B.E., and Corsetti, F.A., 2007, Undressing and redressing Ediacaran embryos – reply to brief communication arising. Nature, doi: 10.1038/nature05753. 3. Bailey, J.V., Joye, S.B., Kalanetra, K.M., Flood, B.E., and Corsetti, F.A., 2007, Evidence of giant sulphur bacteria in Neoproterozoic phosphorites. Nature, v. 445, p. 198-201. 2. Bailey, J.V., Corsetti, F.A., Bottjer, D.J., and Marenco, K.N., 2006, Microbially-mediated environmental influences on metazoan colonization of matground ecosystems: evidence from the Lower Cambrian Harkless Formation. Palaios, v. 21, p. 215-226. 1. Bailey, J.V., Cohen, A.S., and Kring, D.A., 2005, Lacustrine fossil preservation in acidic environments: Implications of experimental and field studies for the Cretaceous-Paleogene Boundary acid rain trauma. Palaios, v. 20, p. 376-389.

Non-refereed Articles and Other Publications Hays, L. ed. and 33 lead authors, 2015, NASA Astrobiology Strategy and Roadmap, NASA White Paper, 256 p. Bailey, J.V., 2011, Breathing room for early animals. Nature Geoscience, v.4, p. 354-355

Invited Presentations: 2016: “Science on the Spot,” Microbial and Plant Genomics Institute, St. Paul, MN 2016: Seminar, University of Southern California, Los Angeles, CA 2016: Seminar, Minnesota Institute for Astrophysics, Minneapolis, MN 2016: Symposium on life in the deep sea, Univ. of Concepción, Concepción, Chile 2015: Short course and seminar: co-evolution of Earth and life from the Proterozoic through to the dawn of the Phanerozoic, Särghaua, Estonia 2015: National Marine Information and Research Centre, Regional Graduate Network in Oceanography Symposium, Swakopmund, Namibia 2014: Kavli Frontiers of Science Symposium, National Academy of Sciences campus, Irvine, CA 2014: Keynote speaker, Goldschmidt Conference, Sacramento, CA 2014: National Marine Information and Research Centre, Regional Graduate Network in Oceanography Symposium, Swakopmund, Namibia 2014: International workshop on Proterozoic phosphogenesis. Tartu University, Tartu, Estonia 2013: Society for the Advancement of Chicanos and Native Americans in Science National Meeting, San Antonio, TX 2013: University of Minnesota: Microbiology, Immunology and Cancer Biology Invited Seminar Speaker Series, Minneapolis, MN 2013: Northwestern University, Earth and Planetary Sciences Department Seminar, Evanston IL 2013: University of Minnesota, Soil, Water, and Climate Department Seminar 2013: Geological Society of Minnesota, Minneapolis, MN 2012: Society for the Advancement of Chicanos and Native Americans in Science National Meeting, Seattle, WA 2012: University of Minnesota: Microbiology, Immunology and Cancer Biology Invited Seminar Speaker Series, Minneapolis, MN 2011: University of Minnesota Bacteriology Symposium, Minneapolis, MN 2011: NASA Symposium “Paleobiology in the genomics era”, J. Craig Venter Institute, San Diego, CA 2011: International Geobiology Course, Colorado School of Mines, Golden, CO 2011: St. Olaf College, Northfield, MN, Biology Department Seminar 2011: Aarhus University, Aarhus, Denmark, Center for Geomicrobiology, Seminar 2010: University of Wisconsin, Milwaukee, Great Lakes Water Institute, Seminar 2009: Society for the Advancement of Chicanos and Native Americans in Science National Meeting, Dallas, Texas 2008: Cornell University, Ithaca, NY, Dept. of Microbiology, Seminar 2008: University of California, Los Angeles, Dept. of Earth and Space Sciences 2008: University of Delaware, Dept. of Geological Sciences, Seminar 2008: University of Rhode Island, Graduate School of Oceanography, Seminar 2008: University of Minnesota, Twin Cities, Dept. of Geology and Geophysics, Seminar 2008: Society for the Advancement of Chicanos and Native Americans in Science National Meeting, Salt Lake City, Utah 2007: Lawrence Livermore National Laboratory, Seminar 2007: Society for the Advancement of Chicanos and Native Americans in Science National Meeting, Kansas City, MO (Recruiting Minority Students to the Biogeosciences)

Papers and Abstracts in Conference Proceedings (*denotes advised or co-advised student or postdoc; presenting author is underlined):

Mänd, K., Bailey, J.V., Lepland, A., Kirsimäe, K., (Submitted), Origin of rod and dumbbell shaped phosphate precipitates in Namibian shelf sediments. Nordic Geological Winter Meeting, Helsinki.

75. Flood, B., Fliss, P., Jones, D., Dick., G., Jain, S., Kaster, A.K., Winkel, M., Muβmann, Bailey, J.V., 2015, Metagenome of a Dimorphic Giant Sulfur Bacterium, Thiomargarita nelsonii, Hydrate Ridge Bud S10, More Questions Than Answers? Midwest Geobiology Symposium, Bloomington, Indiana. 74. Jones, D.S., Walker, G.M., Johnson, N.W., Mitchell, C.P., Coleman Wasik, J., Bailey, J.V., 2015, Microbial communities associated with methylmercury production in two Northern Minnesota lakes. Midwest Geobiology Symposium, Bloomington, Indiana. 73. Zoss, R.*, Bailey, J.V., Flood, B.E.*, Gilhooly, W., 2015, Linking phosphorite formation and microbial sulfur oxidation in the past and present. Midwest Geobiology Symposium, Bloomington, Indiana. 72. Swiecichowski, J. Jr., Bailey, J.V. Flood, B.E, Ricci, E., 2015, Carbonate Dissolution Biosignatures in Carbonate Rocks: Preliminary Investigations. Midwest Geobiology Symposium, Bloomington, Indiana. 71. Ricci, E.*, Flood, B.E.*, Swiecichowski, J. Jr.*, Bailey, J.V., 2015, Investigating the Dissolution of Carbonate Rocks by Marine Lithotrophic Bacteria: Preliminary Investigations. Midwest Geobiology Symposium, Bloomington, Indiana. 70. Conley, B., Flood, B.E., Bailey, J.V., 2015, The microbiome of Thiomargarita spp. Midwest Geobiology Symposium, Bloomington, Indiana. 69. Crosby, C.H.*, Bailey, J.V., 2015, Experimental precipitation of apatite pseudofossils. Midwest Geobiology Symposium, Bloomington, Indiana. 68. Hua, A.A., Jones, D.S., Lapakko, K.A, Bailey, J.V., Sadowsky, M.J., Novak, P.J., 2015, Sulfur-oxidizing microorganisms from sulfide mineral deposits in the Duluth Complex, MN, Midwest Geobiology Symposium, Bloomington, Indiana. 67. Mänd, K., Bailey, J.V., Lepland, A., Kirsimäe, K., 2015, Apatitic micronodules in Namibian shelf sediments: mineralized microbes or diagenetic precipitates? Goldschmidt, Prague, Czech Republic. 66. Crosby, C.H.*, Bailey, J.V., Sharma, M., 2015, Fossil Iron-Oxidizing Lithotrophs Preserved in Paleoproterozoic Phosphorites: Implications for Early Phosphogenesis. Goldschmidt, Prague, Czech Republic. Selected as best-in-category poster abstract. 65. Bailey, J.V., Flood, B.E., Jones, D.S., Fliss, P., Dick, G., Jain, S., 2015, Meta- 'omics and the geobiology of giant sulfur bacteria. Goldschmidt, Prague, Czech Republic. 64. Leuer, A., Bailey, J.V., Flood, B.E., Nikrad, J., Jones R.S., 2015 Microbiological Study Investigating Phosphate-Accumulating-Organisms in Dental Biofilms,11th Annual Dental Research Updates, School of Dentistry University of Minnesota. 63. Jones, D.S., Lapakko, K.A.,Wenz, Z.J., Olson, M.C., Bailey, J.V., Novak, P.J., 2015, Microbial communities associated with sulfide mineral oxidation in the Duluth Complex, MnDRIVE: Advancing Industry, Conserving Our Environment Symposium. 62. Frickle, C. *, Bailey, J.V., Lloyd, K., Shumaker, A., Flood, B.E., 2014, Lipid-Based Immuno-Magnetic Separation of Archaea from a Mixed Community, American Geophysical Union Annual Meeting, San Francisco, CA. 61. Bailey, J.V., Flood, B., Ricci, E. *, 2014, Metabolism in the Uncultivated Giant Sulfide- Oxidizing Bacterium Thiomargarita Namibiensis Assayed Using a Redox-Sensitive Dye. American Geophysical Union Annual Meeting, San Francisco, CA. 60. Harrison, B.K. *, Flood, B., Myrbo, A., Bailey, J.V., 2014, Sedimentation history impacts microbial stratigraphy, C-DEBI Annual Meeting, Marina, CA. 59. Frickle, C.M., Bailey, J.V., Lloyd, K.G., Shumaker, A., and Flood, B.E., 2014, Capture and cultivation of microorganisms using magnetic, lipid-bound antibodies. Midwest Geobiology Symposium, Chicago, Illinois. 58. Sheline, E.K. *, Crosby, C.H. *, Bailey, J.V., 2014, Experimental apatite precipitation associated with Liesegang bands and microbial EPS. Midwest Geobiology Symposium, Chicago, Illinois. 57. Crosby, C.H.*, Bailey, J.V., Sharma, M., 2014, Did iron-oxidizing chemolithotrophic bacteria play a role in the formation of early phosphorites? Midwest Geobiology Symposium, Chicago, Illinois. 57. Bailey, J.V., Jones, D., and Crosby, C. 2014, Microbial polyphosphate metabolism: A 2 billion-year-old shunt in the phosphorus cycle? Goldschmidt conference, Sacramento, CA. 56. Fliss P.*, Flood B, Jones D, Bailey J, Dick G & Jain S, 2014, Pearl in the Mud: Genome Assembly and Binning of a Cold Seep Thiomargarita nelsonii Cell and Associated Epibionts from an Environmental Metagenome. Goldschmidt conference, Sacramento, CA. 55. Jones, D. S. *; Flood, B. E.; Bailey, J. V., Polyphosphate metabolism and phosphorus cycling in hypoxic marine sediments, Joint Aquatic Sciences Meeting, Portland, OR. 54. Crosby, C.H.*, Bailey, J.V., Sharma, M., 2014, Did iron-oxidizing chemolithotrophic bacteria play a role in the formation of early phosphorites? European Geosciences Union, Vienna. 53. Vietti, L.A. *, Bailey, J.V., E.M. Ricci*, E.M., 2014, Insights into the microbial degradation of bone in marine environments from rRNA gene sequencing of biofilms on lab simulated carcass-falls; 10th North American Paleontological Convention, Gainsville, FL. 52. Harrison, B.K. *, Bailey J.V., 2013 Actinobacterial diversity across a marine transgression in the deep subsurface off Shimokita Peninsula, Japan. Benjamin K. Harrison, Jake V. Bailey. AGU, San Francisco. 51. Gilbertson, M.E. *, Harrison, B.K. *, Flood, B.E. Myrbo, A., Bailey J.V., 2013 Characterization of microbial populations across geochemical and lithological boundaries in urban lake sediments under environmental change in Minneapolis-St. Paul, AGU, San Francisco. 50. Jones, D.S*, Flood, B.E., Bailey, J.V., 2013 Thiomargarita-like microorganisms from deep cold seeps of the Barbados Accretionary Prism. Geological Society of America, Denver. 49. Crosby, C., Bailey, J.V., Sharma, M., 2013, Possible endolith-mediated weathering profile in 2 billion-year-old phosphorite. Society for the Advancement of Chicanos and Native Americans in Science National Meeting, San Antonio, Texas. 48. Chiu, B., Crosby, C.H., Bailey, J.V., 2013, Cyanobacterial EPS as a Matrix for Apatite Precipitation. Midwest Geobiology Symposium, Indianapolis, IN. 47. Jones, D.S*, Huppert, J.E., Flood, B.E. and Bailey, J.V. 2013, Insights into microbial phosphorus cycling through metatranscriptomic analysis of hypoxic marine sediments. Midwest Geobiology Symposium, Indianapolis, IN. 46. Fliss, P.*, Flood, B.E., Jones, D.S.*, Bailey, J.V., Jain, S., Dick., G., 2013, Pearl in the mud: Genome assembly and binning of a Thiomargarita-like bacterium and associated epibionts from an environmental metagenome. Midwest Geobiology Symposium, Indianapolis, IN. 45. Harrison, B.K.*, Gilbertson, M.E.*, Flood, B.E., Myrbo, A., Bailey J.V., 2013 Characterization of microbial populations across geochemical and lithological boundaries in urban lake sediments under environmental change in Minneapolis-St. Paul. Midwest Geobiology Symposium, Indianapolis, IN. 44. Jones, D.S*, Flood, B.E., Bailey, J.V., 2013 Microbial phosphate release from marine sediments: Transcriptomics and geochemistry. Goldschmidt conference. Florence, Italy. 43. Bailey, J.V., Flood, B.E., 2013 Horizontal gene transfer in phylogenetically-distant taxa that induce the formation of modern wrinkle structures: implications for the interpretation of Earth’s earliest microbialites. Goldschmidt conference. Florence, Italy. 42. Jones, D.S., *, Huppert, J.E., Flood, B.E., Bailey, J.V. 2013, Applying ‘-omics’ to phosphorous cycling: Comparative metatranscriptomics of microbial phosphate release from aquatic sediments. Ecological Society of America Meeting, Minneapolis, MN. 41. Fliss, P.*, Flood, B.E., Jones, D.S., Bailey, J.V., 2013, Preliminary metagenomic data from an attached Thiomargarita nelsonii and associated epibionts. Minnesota Supercomputing Institute Research Exhibition, Minneapolis, MN. 40. Crosby, C.*, Bailey, J.V., Sharma, M., 2013, Microfossils of 2 Ga phosphate rock: Possible eukaryotes? Geobiology Gordon Research Conference, Ventura, CA. 39. Stevens, E.W., Bailey, J.V., Flood, B.E., Jones, D.S., Joye, S.B., A.P., Teske, 2012, Barite crusts from a brine pool in the Gulf Of Mexico entomb filamentous sulfur bacteria. AGU, San Francisco, Calif. 38. Harrison, B.K., Flood, B.E., Myrbo, A., Bailey, J.V., 2012, Response of sedimentary microbial communities to sedimentation events and environmental change in urban lakes – Minneapolis-St. Paul, MN. AGU, San Francisco, Calif. 37. Vietti, L.*, Bailey, J.V., 2012, Lab simulated whale falls produce framboids resembling those from euxinic basins. Geological Society of America Annual Meeting. 36. Harrison, B.*, Flood, B.E., Bailey, J.V., 2012, The Great Migration: Biogeography and Phylotype Transport in Marine Sediments, C-DEBI All Hands Meeting, Marina, CA. 35. Crosby, C.*, Bailey, J.V., Sharma, M., 2012, 2 billion year-old phosphatic rock hosts microfossils with possible eukaryotic affinities. Society for the Advancement of Chicanos and Native Americans in Science National Meeting, Seattle, WA. 34. Flood, B.E., Bailey, J.V., Biddle, J., 2012, Comparative genomics of phylogentically distant bacteria that induce wrinkle structure formation in modern sediments. Midwest Geobiology Symposium, St. Louis, MO. 33. Fliss, P.*, Flood, B.E., Jones, D.S., Bailey, J.V., 2012, Preliminary metagenomic data from an attached Thiomargarita-like bacterium and associated epibionts. Midwest Geobiology Symposium, St. Louis, MO. 32. Jones, D.S*, Bailey, J.V., Flood, B.E., 2012, Polyphosphate dynamics of marine sulphur-oxidizing bacteria. Midwest Geobiology Symposium, St. Louis, MO. 31. Stevens, E.W.*, Bailey, J.V., Flood, B.E., Jones, D.S.*, Joye, S.B., Teske, A.P., 2012, Sulfide-Oxidizing Bacteria Preserved In Barite Crusts From A Brine Pool In The Gulf Of Mexico, Astrobiology Graduate Conference, Pasadena, CA. 30. Bailey, J.V., Corsetti, F.A., Greene, S.E., Orphan, V.J., 2011, Phosphatized filamentous sulfur bacteria in modern and ancient phosphorites. Geological Society of America Annual Meeting, Minneapolis, MN. 29. Hancock, L.*, Olson, S.*, Flood, B.E., Bailey, J.V., 2011, Growth of chemolithoautotrophic sulfur bacteria in association with the dissolution of authigenic carbonate rocks. Geological Society of America Annual Meeting, Minneapolis, MN. 28. Vietti, L.A.*, Flood, B.E., and Bailey, J.V., 2011, The role of whale-fall microbial communities on bone corrosion explored with metagenomics. Geological Society of America Annual Meeting, Minneapolis, MN. 27. Vietti, L.*, Bailey, J., Flood, B.E., 2011, Early framboidal pyrite from a simulated whale fall: new insights into marine tetrapod bone diagenesis. Society of Vertebrate Paleontology Annual Meeting, Las Vegas, NV. 26. Bailey J., Flood, B.E., 2011, Did horizontal gene transfer give rise to congruent bio- sedimentary fabric mediation by phylogenetically-distant bacteria? Geobiology Gordon Research Conference, Ventura, CA. 25. Bailey, J.V., Salman, V., Rouse, G., Orphan, V., Schulz-Vogt, H., Levin, L.A., 2010, Dimorphism in methane seep inhabiting Thiomargarita. International Society for Microbial Ecology Symposium 13, Seattle, WA. 24. Olson, S.*, Hancock, L.*, Bailey, J.V., 2010 Growth of Thiomicrospira crunogena using calcium carbonate as a carbon source. 2010 MRSEC Undergraduate Research Expo., Minneapolis, MN. 23. Hancock, L.*, Olson, S.*, Bailey, J.V., 2010 Colonization and Alteration of Calcium Carbonate by the Sulfur-Oxidizing Bacteria Halothiobacillus neapolitanus and Thiomicrospira crunogena. 2010 MRSEC Undergraduate Research Expo, Minneapolis, MN. 22. Bailey, J.V., Orphan, V.J., Joye, S.B., Corsetti, F.A., 2010, Microbially-induced sedimentary features associated with chemotrophic microbial mats. SEPM Conference - Microbial Mats in Sandy Deposits (Archean to Today), Denver, CO. 21. Dekas, A., Bailey, J.V., Bristow, T.F., Walavalkar, S.S., Orphan, V.J., 2010, Clay Crust Surrounds Microorganisms Mediating the Anaerobic Oxidation of Methane in Marine Sediments. 4th Annual Southern California Geobiology Symposium, Riverside, CA. 20. Bailey, J.V., Corsetti, F.A., 2010, Sulfur bacteria and phosphorites: an ancient geobiological relationship? Precambrian Life, Time and Environment: Evolving Concepts and Modern Analogues, Lucknow, India. 19. Corsetti, F.A., Bailey, J.V., 2009, Doushantuo Formation Microfossils (~600 Ma): Giant Sulfur Bacteria, Embryos, or Both? International Conference on the Cambrian Explosion – Banff, Alberta, Canada. 18. Bailey, J.V., Corsetti, F.A., Orphan, V.J., 2009, Giant reductively-dividing bacteria co-occur with animal eggs and spiny protists in modern sediments: implications for the Doushantuo Lagerstätte. 3rd Annual Southern California Geobiology Symposium, Riverside, CA. 17. Bailey, J.V., Corsetti, F.A., Caron, D., Moldowan, J.M., Fago, F., 2008, In-situ Detection of Squalane in Sedimentary Organic Matter Using Monoclonal Antibodies. American Geophysical Union, Fall Meeting. 16. Bailey, J.V., Salman, V., Joye, S.B., Schulz-Vogt, H., and Corsetti, F.A., 2008 Neoproterozoic phosphogenesis and the radiation of the colorless sulfur bacteria. International Society for Microbial Ecology Symposium-12. 15. Shao, W.*, Bailey, J.V., Caron, D., Corsetti, F.A., 2008, Assessing biomarker syngeneity using monoclonal antibodies. USC Undergradaute Research Symposium. 14. Bailey, J.V., Corsetti, F.A., Moldowan, J.M., Caron, D., 2008, A monoclonal antibody approach to detecting lipid biomarkers and assessing their syngeneity. Astrobiology Science Conference. 13. Bailey, J.V., Salman, V., Green, S., Joye, S.B., Schulz-Vogt, H., and Corsetti, F.A., 2007, Microfossil evidence for 600 million years of bacterially-mediated phosphogenesis. Geological Society of America Abstracts with Programs. 12. Petryshen, V.A., Berelson, W., Corsetti, F.A., Li, H.C., and Bailey, J.V., 2007, The morphogenesis of Walker Lake stromatolites. Geological Society of America Abstracts with Programs. 11. Bailey, J.V., Salman, V., Joye, S.B., Schulz-Vogt, H., and Corsetti, F.A., 2007, Ediacaran animal egg cysts or consortia of giant bacteria? NASA Astrobiology Institute Biosignatures in Ancient Rocks Field Workshop, Sudbury, Ontario. 10. Bailey, J.V., Joye, S.B., Kalanetra, K.M., Flood, B.E., and Corsetti, F.A., 2007, Doushantuo globular microfossils: embryos, bacteria, or both? 4th Annual Southern California Geobiology Symposium, Pasadena, CA. 9. Bailey, J.V., Corsetti, F.A., and Peng, J., 2006, Carbon Isotope Analyses of Organic Matter Associated with Quaternary Stromatolites from Walker Lake, Nevada. 3rd Annual Southern California Geobiology Symposium, Riverside, CA. 8. Bailey, J.V., Corsetti, F.A., and Peng, J., 2005, Origin of Organic Matter in Quaternary Stromatolites: A Molecular Isotopic Study from Walker Lake, Nevada. Geological Society of America Abstracts with Programs, v. 37, no. 7. 7. Bailey, J.V., and Corsetti, F.A., 2005, Mineralized Microporosity Features in Early Cambrian Iron-rich Oncoids. 2nd Annual Southern California Geobiology Symposium, Los Angeles, CA. 6. Bailey, J.V., Corsetti, F.A., Bottjer, D.J., Nicholson, K.A., 2004, Fossil Assemblages in Lower Cambrian Microbial Matground Sediments and Implications for Early Benthic and Infaunal Ecologies. Geological Society of America Abstracts with Programs, v. 36, No. 5, p. 522. 5. Bailey, J.V., Corsetti, F.A., and Bottjer, D.J., 2004, Possible Metazoan Trophic Responses to Microbially-Mediated Redox Conditions in Lower Cambrian Siliciclastic Matgrounds: 1st Annual Southern California Geobiology Symposium, Pasadena, CA. 4. Bailey, J.V., Cohen, A.S., and Kring, D.A., 2003, Experimentally derived constraints on Calcareous Lacustrine Fossil Preservation Following the Chicxulub Acid Trauma, 3rd International Limnogeology Congress, Abstract Volume, Tucson, AZ. 3. Bailey, J. V., McKay, D. S., and Wentworth, S. J., 2003, Mn carbonates in the martian meteorite Nakhla: possible evidence of brine evaporation: Lunar and Planetary Science XXXIV, Abstract #2060, Lunar and Planetary Institute, Houston, TX. 2. Wentworth, S. J., Bailey, J.V., McKay, D. S., Thomas-Keprta, K. L., and Velbel, M., 2002, Distinctive carbonates in five martian meteorites: Search for water on Mars: Abstract: NASA Astrobiology Institute General Meeting, Astrobiology, v. 2, p. 565-566. 1. Wentworth, S. J., Bailey, J.V., McKay, D. S., and Thomas-Keprta, K. L., 2002, Carbonates on Mars: All martian meteorites are not alike. Geological Society of America Abstracts with Programs, paper 12-7.

Oceangoing Research Expeditions: - Research Cruise R/V Kay Kay 2, January 2016, scientist, coastal Chile - Research Cruise #MOM0515 R/V Mirabilis, May 2015, senior scientist, coastal Namibia. - Research Cruise #MOM0314 R/V Mirabilis, March 2014, senior scientist, coastal Namibia. - Research Cruise #NH1212 R/V New Horizon, November 2012, co-chief scientist, Southern California Borderlands - Research Cruise #AT21-02 R/V Atlantis and ROV Jason, June 2012, scientist, Barbados accretionary prism methane seeps - Research Cruise #AT18-2 R/V Atlantis and DSV Alvin, November 2010, scientist, Gulf of Mexico brine pools - Research Cruise #15–59 R/V Atlantis and DSV Alvin, scientist, Costa Rica margin methane seeps and mud volcanoes, January 2010 - Research Cruise #15–44R/V Atlantis and DSV Alvin, scientist, Costa Rica margin methane seeps and mud volcanoes, February–March 2009

Other professional Activities: - Volunteer co-instructor of three-week graduate training program in Chile entitled ECODIM (Ecology and Diversity of Microorganisms). Dichato, Chile. 2015. entitled “Microbial and Geochemical Oceanography in Upwelling Ecosystems.” - Volunteer co-instructor of a four week graduate training program with the goal of developing scientific infrastructure and research capacity in southern Africa entitled “Microbial and Geochemical Oceanography in Upwelling Ecosystems.” Henties Bay, Namibia. 2014-2015.

Advisees: Advised Postdoctoral Researchers Daniel Jones (Agouron Institute Postdoctoral Fellow) Oct. 2011 - 2014 Ben Harrison (NSF C-DEBI Postdoctoral Fellow) Apr. 2012 - 2014

Lab researchers: Beverly Flood (2010-Present; Postdoctoral Research Associate) Elizabeth Ricci (Junior Scientist, 2014-Present)

Graduate Researchers Fernando Medina Ferrer (Ph.D. student, 2015-Present) Ashley Breiland (MS student, 2015-Present) Christine Crosby (08/10-Present, Ph.D. expected spring, 2016) Cindy Frickle (Graduated – MS spring 2015) Eric Stevens (Graduated - MS fall 2013) Palmer Fliss (Graduated -MS spring 2014) Laura Vietti (Graduated - co-advised with David Fox, Ph.D. awarded spring 2014)

Undergraduate Researchers Charles Thunder (MnDRIVE North Star STEM undergraduate research, 2015) Peter Schroedl (Research assistant, UROP 2015) An An Hua, UMN (UROP 2014-2015) Gabriel Walker, Undergraduate Researcher, (URS 2014-2015) John Swiecichowski, UMN (Research assistant, directed research, UROP 2014-2015) David Scott, UMN (Research Assistant, Directed Research, 2014) Max Gilbertson, UMN (Research Assistant, 2013) Jasmine MacKenzie, UMN (Research Assistant, 2013) Beverly Chiu, Rutgers (REU intern, 2013) Quincy Rosemarie, UMN (Directed Research, 08/12-12/12) Elizabeth Ricci, UMN (Directed Research, 01/12-Present) Cassandra Ho, UMN (HHMI 2011) Katie Rempfert, UMN (Directed Research, 08/11-Present) Kelsey Wenner, UMN (Directed Research, 05/12-11/12) Joe Huppert, UMN (Research Assistant, 10/11-Present) Sophia Ruben, HTW Berlin, (2011 German Academic Exchange Service Scholar) Corinne Walden, Duke (2011 REU Summer Intern) Cindy Frickle, UMN (2011, UROP Awardee) Sannie Olson, St. Scholastica (2010, REU Summer Intern) Leanne Hancock, University of Georgia (2010, REU Summer Intern)

Advising Committee Jackie Sampson (2015-Present) Florida State University Drew Syverson (2015, Ph.D. Defense) Colleen Hoffman (2014-Present) Dan Maxbauer (2013-Present) Lindsey Briscoe (2012-Present) Brandi Cron-Kamermans (2011-Present) Mark Krzmarzick (2011, Ph.D. Defense) (Civil Engineering) Peter Rose (2011, Ph.D. Defense) Andrew Haveles (2010-Present) Chiji Ochiagha (2011, Masters)

Reviewing and Editorial Duties: Journal associate editor: Geobiology 2014-Present; Frontiers in Extreme Microbiology 2011-present Journal reviewer: Nature Geosciences; Geology; PLOS One; Nature Scientific Reports; Frontiers in Microbiology; Evolution and Development; Palaios; Palaeogeog., Palaeoclimat. Palaeoecol; Geobiology; Chemical Geology; Sedimentology. Proposal reviewer: NSF EAR Geobiology and Low-temp Geochemistry; NSF Paleobiology; NSF Chemical Oceanography; NSF Major Research Instrumentation; NSF Center for Dark Energy Biosphere Investigations (C-DEBI); NASA Astrobiology Institute; Pew Scholars Competition (UMN OVPR); Schmidt Ocean Institute; American Chemical Society Petroleum Research Fund Proposal Review Panelist: NASA ROSES Exobiology Proposal Review Panel, Bethesda, MD (2011)

Academic and Volunteer Service: 2015: Session organizer and convener, “Phosphorus biogeochemistry – Past and Present” Goldschmidt Meeting, Prague, Czech Republic 2015: Session leader. Outreach day for local high school students, Henties Bay, Namibia 2015: Member, Student Awards Committee, UMN Department of Earth Sciences 20115: Member, Gibson Postdoc Search Committee, UMN Department of Earth Sciences 2015-2011: Outreach to underrepresented groups: - Faculty participant Minority Male STEM Dinner - Faculty participant Bridge to the Baccalaureate - Faculty participant NorthSTAR STEM Kickoff Event - Faculty participant UMN admissions “Golden Evening” for Latino Students 2014: Student seminar reviewer and prospective student interviewer for MICaB graduate program 2014: Session organizer and convener, “Life in rocks and mineral precipitates.” Goldschmidt Meeting, Sacramento, CA. 2014: Geobiology search committee, Department of Earth Sciences 2010, 2011, 2013, 2014: UMN Community Fund Drive fundraising organizer 2014: Editorial Board –Geobiology 2013: Session Organizer, Society for the Advancement of Chicanos and Native Americans in Science National Conference 2013, Participant, NASA Astrobiology Roadmap Meeting, Wallops Island, VA. 2013: Surface processes search committee, Department of Earth Sciences 2013-2015: Member, University of Minnesota Marine Biology Minor Curriculum Committee 2013: University of Minnesota Writing-Enriched Curriculum (WEC) writing sample rater 2013-2010: Session leader or co-leader (with K. Matsumoto): Exploring Careers in Engineering and Physical Sciences (ECEPS); University of Minnesota outreach to high school students 2012: Surface Processes Faculty Position Search Committee, University of Minnesota 2012: Undergraduate presentation judge, Society for the Advancement of Chicanos and Native Americans in Science National Conference 2011: NSF GEO REU workshop participant, San Jose, California 2011: Recruitment of students from underrepresented groups for REU program at SACNAS meeting 2010-2011: Poster Presenter (Outreach), NSF NorthSTAR STEM Kickoff Event 2011: Session advocate, organizer, and moderator, Geological Society of America Topical Session “T29 Microbial Mediation of Authigenic Minerals.” 2008-2010: Society for the Advancement of Chicanos and Native Americans in Science Mentor