3 Nonlinear Regression
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Orthogonal Functions, Radial Basis Functions (RBF) and Cross-Validation (CV)
Exercise 6: Orthogonal Functions, Radial Basis Functions (RBF) and Cross-Validation (CV) CSElab Computational Science & Engineering Laboratory Outline 1. Goals 2. Theory/ Examples 3. Questions Goals ⚫ Orthonormal Basis Functions ⚫ How to construct an orthonormal basis ? ⚫ Benefit of using an orthonormal basis? ⚫ Radial Basis Functions (RBF) ⚫ Cross Validation (CV) Motivation: Orthonormal Basis Functions ⚫ Computation of interpolation coefficients can be compute intensive ⚫ Adding or removing basis functions normally requires a re-computation of the coefficients ⚫ Overcome by orthonormal basis functions Gram-Schmidt Orthonormalization 푛 ⚫ Given: A set of vectors 푣1, … , 푣푘 ⊂ 푅 푛 ⚫ Goal: Generate a set of vectors 푢1, … , 푢푘 ⊂ 푅 such that 푢1, … , 푢푘 is orthonormal and spans the same subspace as 푣1, … , 푣푘 ⚫ Click here if the animation is not playing Recap: Projection of Vectors ⚫ Notation: Denote dot product as 푎Ԧ ⋅ 푏 = 푎Ԧ, 푏 1 (bilinear form). This implies the norm 푢 = 푎Ԧ, 푎Ԧ 2 ⚫ Define the scalar projection of v onto u as 푃푢 푣 = 푢,푣 | 푢 | 푢,푣 푢 ⚫ Hence, is the part of v pointing in direction of u | 푢 | | 푢 | 푢 푢 and 푣∗ = 푣 − , 푣 is orthogonal to 푢 푢 | 푢 | Gram-Schmidt for Vectors 푛 ⚫ Given: A set of vectors 푣1, … , 푣푘 ⊂ 푅 푣1 푢1 = | 푣1 | 푣2,푢1 푢1 푢2 = 푣2 − = 푣2 − 푣2, 푢1 푢1 as 푢1 normalized 푢1 푢1 푢3 = 푣3 − 푣3, 푢1 푢1 What’s missing? Gram-Schmidt for Vectors 푛 ⚫ Given: A set of vectors 푣1, … , 푣푘 ⊂ 푅 푣1 푢1 = | 푣1 | 푣2,푢1 푢1 푢2 = 푣2 − = 푣2 − 푣2, 푢1 푢1 as 푢1 normalized 푢1 푢1 푢3 = 푣3 − 푣3, 푢1 푢1 What’s missing? 푢3is orthogonal to 푢1, but not yet to 푢2 푢3 = 푢3 − 푢3, 푢2 푢2 If the animation is not playing, please click here Gram-Schmidt for Functions ⚫ Given: A set of functions 푔1, … , 푔푘 .We want 휙1, … , 휙푘 ⚫ Bridge to Gram-Schmidt for vectors: ∞ ⚫ Define 푔푖, 푔푗 = −∞ 푔푖 푥 푔푗 푥 푑푥 ⚫ What’s the corresponding norm? Gram-Schmidt for Functions ⚫ Given: A set of functions 푔1, … , 푔푘 .We want 휙1, … , 휙푘 ⚫ Bridge to Gram-Schmidt for vectors: ∞ ⚫ 푔 , 푔 = 푔 푥 푔 푥 푑푥 . -
Anatomically Informed Basis Functions — Anatomisch Informierte Basisfunktionen
Anatomically Informed Basis Functions | Anatomisch Informierte Basisfunktionen Dissertation zur Erlangung des akademischen Grades doctor rerum naturalium (Dr.rer.nat.), genehmigt durch die Fakult¨atf¨urNaturwissenschaften der Otto{von{Guericke{Universit¨atMagdeburg von Diplom-Informatiker Stefan Kiebel geb. am 10. Juni 1968 in Wadern/Saar Gutachter: Prof. Dr. Lutz J¨ancke Prof. Dr. Hermann Hinrichs Prof. Dr. Cornelius Weiller Eingereicht am: 27. Februar 2001 Verteidigung am: 9. August 2001 Abstract In this thesis, a method is presented that incorporates anatomical information into the statistical analysis of functional neuroimaging data. Available anatomical informa- tion is used to explicitly specify spatial components within a functional volume that are assumed to carry evidence of functional activation. After estimating the activity by fitting the same spatial model to each functional volume and projecting the estimates back into voxel-space, one can proceed with a conventional time-series analysis such as statistical parametric mapping (SPM). The anatomical information used in this work comprised the reconstructed grey matter surface, derived from high-resolution T1-weighted magnetic resonance images (MRI). The spatial components specified in the model were of low spatial frequency and confined to the grey matter surface. By explaining the observed activity in terms of these components, one efficiently captures spatially smooth response components induced by underlying neuronal activations lo- calised close to or within the grey matter sheet. Effectively, the method implements a spatially variable anatomically informed deconvolution and consequently the method was named anatomically informed basis functions (AIBF). AIBF can be used for the analysis of any functional imaging modality. In this thesis it was applied to simu- lated and real functional MRI (fMRI) and positron emission tomography (PET) data. -
A Local Radial Basis Function Method for the Numerical Solution of Partial Differential Equations Maggie Elizabeth Chenoweth [email protected]
Marshall University Marshall Digital Scholar Theses, Dissertations and Capstones 1-1-2012 A Local Radial Basis Function Method for the Numerical Solution of Partial Differential Equations Maggie Elizabeth Chenoweth [email protected] Follow this and additional works at: http://mds.marshall.edu/etd Part of the Numerical Analysis and Computation Commons Recommended Citation Chenoweth, Maggie Elizabeth, "A Local Radial Basis Function Method for the Numerical Solution of Partial Differential Equations" (2012). Theses, Dissertations and Capstones. Paper 243. This Thesis is brought to you for free and open access by Marshall Digital Scholar. It has been accepted for inclusion in Theses, Dissertations and Capstones by an authorized administrator of Marshall Digital Scholar. For more information, please contact [email protected]. A LOCAL RADIAL BASIS FUNCTION METHOD FOR THE NUMERICAL SOLUTION OF PARTIAL DIFFERENTIAL EQUATIONS Athesissubmittedto the Graduate College of Marshall University In partial fulfillment of the requirements for the degree of Master of Arts in Mathematics by Maggie Elizabeth Chenoweth Approved by Dr. Scott Sarra, Committee Chairperson Dr. Anna Mummert Dr. Carl Mummert Marshall University May 2012 Copyright by Maggie Elizabeth Chenoweth 2012 ii ACKNOWLEDGMENTS I would like to begin by expressing my sincerest appreciation to my thesis advisor, Dr. Scott Sarra. His knowledge and expertise have guided me during my research endeavors and the process of writing this thesis. Dr. Sarra has also served as my teaching mentor, and I am grateful for all of his encouragement and advice. It has been an honor to work with him. I would also like to thank the other members of my thesis committee, Dr. -
Linear Basis Function Models
Linear basis function models Linear basis function models Linear models for regression Francesco Corona FC - Fortaleza Linear basis function models Linear models for regression Linear basis function models Linear models for regression The focus so far on unsupervised learning, we turn now to supervised learning ◮ Regression The goal of regression is to predict the value of one or more continuous target variables t, given the value of a D-dimensional vector x of input variables ◮ e.g., polynomial curve fitting FC - Fortaleza Linear basis function models Linear basis function models Linear models for regression (cont.) Training data of N = 10 points, blue circles ◮ each comprising an observation of the input variable x along with the 1 corresponding target variable t t 0 The unknown function sin(2πx) is used to generate the data, green curve ◮ −1 Goal: Predict the value of t for some new value of x ◮ 0 x 1 without knowledge of the green curve The input training data x was generated by choosing values of xn, for n = 1,..., N, that are spaced uniformly in the range [0, 1] The target training data t was obtained by computing values sin(2πxn) of the function and adding a small level of Gaussian noise FC - Fortaleza Linear basis function models Linear basis function models Linear models for regression (cont.) ◮ We shall fit the data using a polynomial function of the form M 2 M j y(x, w)= w0 + w1x + w2x + · · · + wM x = wj x (1) Xj=0 ◮ M is the polynomial order, x j is x raised to the power of j ◮ Polynomial coefficients w0,..., wM are collected -
A Toolbox for Nonlinear Regression in R: the Package Nlstools
JSS Journal of Statistical Software August 2015, Volume 66, Issue 5. http://www.jstatsoft.org/ A Toolbox for Nonlinear Regression in R: The Package nlstools Florent Baty Christian Ritz Sandrine Charles Cantonal Hospital St. Gallen University of Copenhagen University of Lyon Martin Brutsche Jean-Pierre Flandrois Cantonal Hospital St. Gallen University of Lyon Marie-Laure Delignette-Muller University of Lyon Abstract Nonlinear regression models are applied in a broad variety of scientific fields. Various R functions are already dedicated to fitting such models, among which the function nls() has a prominent position. Unlike linear regression fitting of nonlinear models relies on non-trivial assumptions and therefore users are required to carefully ensure and validate the entire modeling. Parameter estimation is carried out using some variant of the least- squares criterion involving an iterative process that ideally leads to the determination of the optimal parameter estimates. Therefore, users need to have a clear understanding of the model and its parameterization in the context of the application and data consid- ered, an a priori idea about plausible values for parameter estimates, knowledge of model diagnostics procedures available for checking crucial assumptions, and, finally, an under- standing of the limitations in the validity of the underlying hypotheses of the fitted model and its implication for the precision of parameter estimates. Current nonlinear regression modules lack dedicated diagnostic functionality. So there is a need to provide users with an extended toolbox of functions enabling a careful evaluation of nonlinear regression fits. To this end, we introduce a unified diagnostic framework with the R package nlstools. -
Introduction to Radial Basis Function Networks
Intro duction to Radial Basis Function Networks Mark J L Orr Centre for Cognitive Science University of Edinburgh Buccleuch Place Edinburgh EH LW Scotland April Abstract This do cumentisanintro duction to radial basis function RBF networks a typ e of articial neural network for application to problems of sup ervised learning eg regression classication and time series prediction It is now only available in PostScript an older and now unsupp orted hyp ertext ver sion maybeavailable for a while longer The do cumentwas rst published in along with a package of Matlab functions implementing the metho ds describ ed In a new do cument Recent Advances in Radial Basis Function Networks b ecame available with a second and improved version of the Matlab package mjoancedacuk wwwancedacukmjopapersintrops wwwancedacukmjointrointrohtml wwwancedacukmjosoftwarerbfzip wwwancedacukmjopapersrecadps wwwancedacukmjosoftwarerbfzip Contents Intro duction Sup ervised Learning Nonparametric Regression Classication and Time Series Prediction Linear Mo dels Radial Functions Radial Basis Function Networks Least Squares The Optimal WeightVector The Pro jection Matrix Incremental Op erations The Eective NumberofParameters Example Mo del Selection Criteria CrossValidation Generalised -
Linear Models for Regression
Machine Learning Srihari Linear Models for Regression Sargur Srihari [email protected] 1 Machine Learning Srihari Topics in Linear Regression • What is regression? – Polynomial Curve Fitting with Scalar input – Linear Basis Function Models • Maximum Likelihood and Least Squares • Stochastic Gradient Descent • Regularized Least Squares 2 Machine Learning Srihari The regression task • It is a supervised learning task • Goal of regression: – predict value of one or more target variables t – given d-dimensional vector x of input variables – With dataset of known inputs and outputs • (x1,t1), ..(xN,tN) • Where xi is an input (possibly a vector) known as the predictor • ti is the target output (or response) for case i which is real-valued – Goal is to predict t from x for some future test case • We are not trying to model the distribution of x – We dont expect predictor to be a linear function of x • So ordinary linear regression of inputs will not work • We need to allow for a nonlinear function of x • We don’t have a theory of what form this function to take 3 Machine Learning Srihari An example problem • Fifty points generated (one-dimensional problem) – With x uniform from (0,1) – y generated from formula y=sin(1+x2)+noise • Where noise has N(0,0.032) distribution • Noise-free true function and data points are as shown 4 Machine Learning Srihari Applications of Regression 1. Expected claim amount an insured person will make (used to set insurance premiums) or prediction of future prices of securities 2. Also used for algorithmic -
An Efficient Nonlinear Regression Approach for Genome-Wide
An Efficient Nonlinear Regression Approach for Genome-wide Detection of Marginal and Interacting Genetic Variations Seunghak Lee1, Aur´elieLozano2, Prabhanjan Kambadur3, and Eric P. Xing1;? 1School of Computer Science, Carnegie Mellon University, USA 2IBM T. J. Watson Research Center, USA 3Bloomberg L.P., USA [email protected] Abstract. Genome-wide association studies have revealed individual genetic variants associated with phenotypic traits such as disease risk and gene expressions. However, detecting pairwise in- teraction effects of genetic variants on traits still remains a challenge due to a large number of combinations of variants (∼ 1011 SNP pairs in the human genome), and relatively small sample sizes (typically < 104). Despite recent breakthroughs in detecting interaction effects, there are still several open problems, including: (1) how to quickly process a large number of SNP pairs, (2) how to distinguish between true signals and SNPs/SNP pairs merely correlated with true sig- nals, (3) how to detect non-linear associations between SNP pairs and traits given small sam- ple sizes, and (4) how to control false positives? In this paper, we present a unified framework, called SPHINX, which addresses the aforementioned challenges. We first propose a piecewise linear model for interaction detection because it is simple enough to estimate model parameters given small sample sizes but complex enough to capture non-linear interaction effects. Then, based on the piecewise linear model, we introduce randomized group lasso under stability selection, and a screening algorithm to address the statistical and computational challenges mentioned above. In our experiments, we first demonstrate that SPHINX achieves better power than existing methods for interaction detection under false positive control. -
Radial Basis Functions
Acta Numerica (2000), pp. 1–38 c Cambridge University Press, 2000 Radial basis functions M. D. Buhmann Mathematical Institute, Justus Liebig University, 35392 Giessen, Germany E-mail: [email protected] Radial basis function methods are modern ways to approximate multivariate functions, especially in the absence of grid data. They have been known, tested and analysed for several years now and many positive properties have been identified. This paper gives a selective but up-to-date survey of several recent developments that explains their usefulness from the theoretical point of view and contributes useful new classes of radial basis function. We consider particularly the new results on convergence rates of interpolation with radial basis functions, as well as some of the various achievements on approximation on spheres, and the efficient numerical computation of interpolants for very large sets of data. Several examples of useful applications are stated at the end of the paper. CONTENTS 1 Introduction 1 2 Convergence rates 5 3 Compact support 11 4 Iterative methods for implementation 16 5 Interpolation on spheres 25 6 Applications 28 References 34 1. Introduction There is a multitude of ways to approximate a function of many variables: multivariate polynomials, splines, tensor product methods, local methods and global methods. All of these approaches have many advantages and some disadvantages, but if the dimensionality of the problem (the number of variables) is large, which is often the case in many applications from stat- istics to neural networks, our choice of methods is greatly reduced, unless 2 M. D. Buhmann we resort solely to tensor product methods. -
Model Selection, Transformations and Variance Estimation in Nonlinear Regression
Model Selection, Transformations and Variance Estimation in Nonlinear Regression Olaf Bunke1, Bernd Droge1 and J¨org Polzehl2 1 Institut f¨ur Mathematik, Humboldt-Universit¨at zu Berlin PSF 1297, D-10099 Berlin, Germany 2 Konrad-Zuse-Zentrum f¨ur Informationstechnik Heilbronner Str. 10, D-10711 Berlin, Germany Abstract The results of analyzing experimental data using a parametric model may heavily depend on the chosen model. In this paper we propose procedures for the ade- quate selection of nonlinear regression models if the intended use of the model is among the following: 1. prediction of future values of the response variable, 2. estimation of the un- known regression function, 3. calibration or 4. estimation of some parameter with a certain meaning in the corresponding field of application. Moreover, we propose procedures for variance modelling and for selecting an appropriate nonlinear trans- formation of the observations which may lead to an improved accuracy. We show how to assess the accuracy of the parameter estimators by a ”moment oriented bootstrap procedure”. This procedure may also be used for the construction of confidence, prediction and calibration intervals. Programs written in Splus which realize our strategy for nonlinear regression modelling and parameter estimation are described as well. The performance of the selected model is discussed, and the behaviour of the procedures is illustrated by examples. Key words: Nonlinear regression, model selection, bootstrap, cross-validation, variable transformation, variance modelling, calibration, mean squared error for prediction, computing in nonlinear regression. AMS 1991 subject classifications: 62J99, 62J02, 62P10. 1 1 Selection of regression models 1.1 Preliminary discussion In many papers and books it is discussed how to analyse experimental data estimating the parameters in a linear or nonlinear regression model, see e.g. -
Nonlinear Regression, Nonlinear Least Squares, and Nonlinear Mixed Models in R
Nonlinear Regression, Nonlinear Least Squares, and Nonlinear Mixed Models in R An Appendix to An R Companion to Applied Regression, third edition John Fox & Sanford Weisberg last revision: 2018-06-02 Abstract The nonlinear regression model generalizes the linear regression model by allowing for mean functions like E(yjx) = θ1= f1 + exp[−(θ2 + θ3x)]g, in which the parameters, the θs in this model, enter the mean function nonlinearly. If we assume additive errors, then the parameters in models like this one are often estimated via least squares. In this appendix to Fox and Weisberg (2019) we describe how the nls() function in R can be used to obtain estimates, and briefly discuss some of the major issues with nonlinear least squares estimation. We also describe how to use the nlme() function in the nlme package to fit nonlinear mixed-effects models. Functions in the car package than can be helpful with nonlinear regression are also illustrated. The nonlinear regression model is a generalization of the linear regression model in which the conditional mean of the response variable is not a linear function of the parameters. As a simple example, the data frame USPop in the carData package, which we load along with the car package, has decennial U. S. Census population for the United States (in millions), from 1790 through 2000. The data are shown in Figure 1 (a):1 library("car") Loading required package: carData brief(USPop) 22 x 2 data.frame (17 rows omitted) year population [i] [n] 1 1790 3.9292 2 1800 5.3085 3 1810 7.2399 .. -
Basis Functions
Basis Functions Volker Tresp Summer 2017 1 Nonlinear Mappings and Nonlinear Classifiers • Regression: { Linearity is often a good assumption when many inputs influence the output { Some natural laws are (approximately) linear F = ma { But in general, it is rather unlikely that a true function is linear • Classification: { Linear classifiers also often work well when many inputs influence the output { But also for classifiers, it is often not reasonable to assume that the classification boundaries are linear hyper planes 2 Trick • We simply transform the input into a high-dimensional space where the regressi- on/classification is again linear! • Other view: let's define appropriate features • Other view: let's define appropriate basis functions • XOR-type problem with patterns 0 0 ! +1 1 0 ! −1 0 1 ! −1 1 1 ! +1 3 XOR is not linearly separable 4 Trick: Let's Add Basis Functions • Linear Model: input vector: 1; x1; x2 • Let's consider x1x2 in addition • The interaction term x1x2 couples two inputs nonlinearly 5 With a Third Input z3 = x1x2 the XOR Becomes Linearly Separable f(x) = 1 − 2x1 − 2x2 + 4x1x2 = φ1(x) − 2φ2(x) − 2φ3(x) + 4φ4(x) with φ1(x) = 1; φ2(x) = x1; φ3(x) = x2; φ4(x) = x1x2 6 f(x) = 1 − 2x1 − 2x2 + 4x1x2 7 Separating Planes 8 A Nonlinear Function 9 f(x) = x − 0:3x3 2 3 Basis functions φ1(x) = 1; φ2(x) = x; φ3(x) = x ; φ4(x) = x und w = (0; 1; 0; −0:3) 10 Basic Idea • The simple idea: in addition to the original inputs, we add inputs that are calculated as deterministic functions of the existing inputs, and treat them as additional inputs