Geographical Variation in the Cephalic Lateral Line Canals of Eucyclogobius Newberryi (Teleostei, Gobiidae) and Its Comparison with Molecular Phylogeography
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Diablo Canyon Power Plant
ASSESSING POWER PLANT COOLING WATER INTAKE SYSTEM ENTRAINMENT IMPACTS EPORT R Prepared For: California Energy Commission Prepared By: ONSULTANT ONSULTANT JOHN STEINBECK, Tenera C Environmental Inc. JOHN HEDGEPETH, Tenera Environmental Inc. PETER RAIMONDI, Department of Ecology and Evolutionary Biology, University of California, Center for Ocean Health, Long Marine Lab GREGOR CAILLIET, Moss Landing Marine Laboratories DAVID MAYER, Tenera Environmental Inc. OCTOBER 2007 CEC-700-2007-010 Prepared By: Tenera Environmental Inc. John Steinbeck San Luis Obispo, California Contract No. 700-05-002 Prepared For: CALIFORNIA ENERGY COMMISSION Rick York Project Manager Paul Richins Manager ENVIRONMENTAL OFFICE Terrence O’Brien Deputy Director ENERGY FACILITIES SITING DIVISION B. B. Blevins Executive Director DISCLAIMER This report was prepared as the result of work sponsored by the California Energy Commission. It does not necessarily represent the views of the Energy Commission, its employees, or the State of California. The Energy Commission, the State of California, its employees, contractors, and subcontractors make no warrant, express or implied, and assume no legal liability for the information in this report; nor does any party represent that the uses of this information will not infringe upon privately owned rights. This report has not been approved or disapproved by the California Energy Commission nor has the California Energy Commission passed upon the accuracy or adequacy of the information in this report. ACKNOWLEDGEMENTS It should be obvious that large studies like these require the coordinated work of many people. We would first like to thank the California Energy Commission, especially Rick York and Dick Anderson, for funding this study and recognizing the importance of publishing this work so it could be used by other researchers and decision makers. -
Humboldt Bay Fishes
Humboldt Bay Fishes ><((((º>`·._ .·´¯`·. _ .·´¯`·. ><((((º> ·´¯`·._.·´¯`·.. ><((((º>`·._ .·´¯`·. _ .·´¯`·. ><((((º> Acknowledgements The Humboldt Bay Harbor District would like to offer our sincere thanks and appreciation to the authors and photographers who have allowed us to use their work in this report. Photography and Illustrations We would like to thank the photographers and illustrators who have so graciously donated the use of their images for this publication. Andrey Dolgor Dan Gotshall Polar Research Institute of Marine Sea Challengers, Inc. Fisheries And Oceanography [email protected] [email protected] Michael Lanboeuf Milton Love [email protected] Marine Science Institute [email protected] Stephen Metherell Jacques Moreau [email protected] [email protected] Bernd Ueberschaer Clinton Bauder [email protected] [email protected] Fish descriptions contained in this report are from: Froese, R. and Pauly, D. Editors. 2003 FishBase. Worldwide Web electronic publication. http://www.fishbase.org/ 13 August 2003 Photographer Fish Photographer Bauder, Clinton wolf-eel Gotshall, Daniel W scalyhead sculpin Bauder, Clinton blackeye goby Gotshall, Daniel W speckled sanddab Bauder, Clinton spotted cusk-eel Gotshall, Daniel W. bocaccio Bauder, Clinton tube-snout Gotshall, Daniel W. brown rockfish Gotshall, Daniel W. yellowtail rockfish Flescher, Don american shad Gotshall, Daniel W. dover sole Flescher, Don stripped bass Gotshall, Daniel W. pacific sanddab Gotshall, Daniel W. kelp greenling Garcia-Franco, Mauricio louvar -
Open Ocean Intake Effects Study
City of Santa Cruz Water Department & Soquel Creek Water District scwd2 Desalination Program Open Ocean Intake Effects Study December 2010 Submitted to: Ms. Heidi Luckenbach City of Santa Cruz 212 Locust Street Santa Cruz, CA 95060 Prepared by: Environmental ESLO2010-017.1 [Blank Page] ACKNOWLEDGEMENTS Tenera Environmental wishes to acknowledge the valuable contributions of the Santa Cruz Water Department, Soquel Creek Water District, and scwd² Task Force in conducting the Open Ocean Intake Effects Study. Specifically, Tenera would like to acknowledge the efforts of: City of Santa Cruz Water Department Soquel Creek Water District Bill Kocher, Director Laura Brown, General Manager Linette Almond, Engineering Manager Melanie Mow Schumacher, Public Information Heidi R. Luckenbach, Program Coordinator Coordinator Leah Van Der Maaten, Associate Engineer Catherine Borrowman, Professional and Technical scwd² Task Force Assistant Ryan Coonerty Todd Reynolds, Kennedy/Jenks and scwd² Bruce Daniels Technical Advisor Bruce Jaffe Dan Kriege Thomas LaHue Don Lane Cynthia Mathews Mike Rotkin Ed Porter Tenera’s project team included the following members: David L. Mayer, Ph.D., Tenera Environmental President and Principal Scientist John Steinbeck, Tenera Environmental Vice President and Principal Scientist Carol Raifsnider, Tenera Environmental Director of Operations and Principal Scientist Technical review and advice was provided by: Pete Raimondi, Ph.D., UCSC, Professor of Ecology and Evolutionary Biology in the Earth and Marine Sciences Dept. Gregor -
Patterns of Evolution in Gobies (Teleostei: Gobiidae): a Multi-Scale Phylogenetic Investigation
PATTERNS OF EVOLUTION IN GOBIES (TELEOSTEI: GOBIIDAE): A MULTI-SCALE PHYLOGENETIC INVESTIGATION A Dissertation by LUKE MICHAEL TORNABENE BS, Hofstra University, 2007 MS, Texas A&M University-Corpus Christi, 2010 Submitted in Partial Fulfillment of the Requirements for the Degree of DOCTOR OF PHILOSOPHY in MARINE BIOLOGY Texas A&M University-Corpus Christi Corpus Christi, Texas December 2014 © Luke Michael Tornabene All Rights Reserved December 2014 PATTERNS OF EVOLUTION IN GOBIES (TELEOSTEI: GOBIIDAE): A MULTI-SCALE PHYLOGENETIC INVESTIGATION A Dissertation by LUKE MICHAEL TORNABENE This dissertation meets the standards for scope and quality of Texas A&M University-Corpus Christi and is hereby approved. Frank L. Pezold, PhD Chris Bird, PhD Chair Committee Member Kevin W. Conway, PhD James D. Hogan, PhD Committee Member Committee Member Lea-Der Chen, PhD Graduate Faculty Representative December 2014 ABSTRACT The family of fishes commonly known as gobies (Teleostei: Gobiidae) is one of the most diverse lineages of vertebrates in the world. With more than 1700 species of gobies spread among more than 200 genera, gobies are the most species-rich family of marine fishes. Gobies can be found in nearly every aquatic habitat on earth, and are often the most diverse and numerically abundant fishes in tropical and subtropical habitats, especially coral reefs. Their remarkable taxonomic, morphological and ecological diversity make them an ideal model group for studying the processes driving taxonomic and phenotypic diversification in aquatic vertebrates. Unfortunately the phylogenetic relationships of many groups of gobies are poorly resolved, obscuring our understanding of the evolution of their ecological diversity. This dissertation is a multi-scale phylogenetic study that aims to clarify phylogenetic relationships across the Gobiidae and demonstrate the utility of this family for studies of macroevolution and speciation at multiple evolutionary timescales. -
DINÂMICA EVOLUTIVA DO Dnar EM CROMOSSOMOS DE PEIXES DA FAMÍLIA ELEOTRIDAE E REVISÃO CITOGENÉTICA DA ORDEM GOBIIFORMES(OSTEICHTHYES, TELEOSTEI)
DINÂMICA EVOLUTIVA DO DNAr EM CROMOSSOMOS DE PEIXES DA FAMÍLIA ELEOTRIDAE E REVISÃO CITOGENÉTICA DA ORDEM GOBIIFORMES(OSTEICHTHYES, TELEOSTEI) SIMIÃO ALEFE SOARES DA SILVA ________________________________________________ Dissertação de Mestrado Natal/RN, Fevereiro de 2019 UNIVERSIDADE FEDERAL DO RIO GRANDE DO NORTE CENTRO DE BIOCIÊNCIAS PROGRAMA DE PÓS-GRADUAÇÃO EM SISTEMÁTICA E EVOLUÇÃO DINÂMICA EVOLUTIVA DO DNAr EM CROMOSSOMOS DE PEIXES DA FAMÍLIA ELEOTRIDAE E REVISÃO CITOGENÉTICA DA ORDEM GOBIIFORMES (OSTEICHTHYES, TELEOSTEI) Simião Alefe Soares da Silva Dissertação apresentada ao Programa de Pós-Graduação em Sistemática e Evolução da Universidade Federal do Rio Grande do Norte, como parte dos requisitos para obtenção do título de Mestre em Sistemática e Evolução. Orientador: Dr. Wagner Franco Molina Co-Orientador: Dr. Paulo Augusto de Lima Filho Natal/RN 2019 Universidade Federal do Rio Grande do Norte - UFRN Sistema de Bibliotecas - SISBI Catalogação de Publicação na Fonte. UFRN - Biblioteca Central Zila Mamede Silva, Simião Alefe Soares da. Dinâmica evolutiva do DNAr em cromossomos de peixes da família Eleotridae e revisão citogenética da ordem gobiiformes (Osteichthyes, Teleostei) / Simião Alefe Soares da Silva. - 2019. 69 f.: il. Dissertação (mestrado) - Universidade Federal do Rio Grande do Norte, Centro de Biociências, Programa de Pós-Graduação em 1. Evolução cromossômica - Dissertação. 2. Diversificação cariotípica - Dissertação. 3. Rearranjos cromossômicos - Dissertação. 4. DNAr - Dissertação. 5. Microssatélites - Dissertação. I. Lima Filho, Paulo Augusto de. II. Molina, Wagner Franco. III. Título. RN/UF/BCZM CDU 575:597.2/.5 SIMIÃO ALEFE SOARES DA SILVA DINÂMICA EVOLUTIVA DO DNAr EM CROMOSSOMOS DE PEIXES DA FAMÍLIA ELEOTRIDAE E REVISÃO CITOGENÉTICA DA ORDEM GOBIIFORMES (OSTEICHTHYES, TELEOSTEI) Dissertação apresentada ao Programa de Pós-Graduação em Sistemática e Evolução da Universidade Federal do Rio Grande do Norte, como requisitos para obtenção do título de Mestre em Sistemática e Evolução com ênfase em Padrões e Processos Evolutivos. -
Guide to the Coastal Marine Fishes of California
STATE OF CALIFORNIA THE RESOURCES AGENCY DEPARTMENT OF FISH AND GAME FISH BULLETIN 157 GUIDE TO THE COASTAL MARINE FISHES OF CALIFORNIA by DANIEL J. MILLER and ROBERT N. LEA Marine Resources Region 1972 ABSTRACT This is a comprehensive identification guide encompassing all shallow marine fishes within California waters. Geographic range limits, maximum size, depth range, a brief color description, and some meristic counts including, if available: fin ray counts, lateral line pores, lateral line scales, gill rakers, and vertebrae are given. Body proportions and shapes are used in the keys and a state- ment concerning the rarity or commonness in California is given for each species. In all, 554 species are described. Three of these have not been re- corded or confirmed as occurring in California waters but are included since they are apt to appear. The remainder have been recorded as occurring in an area between the Mexican and Oregon borders and offshore to at least 50 miles. Five of California species as yet have not been named or described, and ichthyologists studying these new forms have given information on identification to enable inclusion here. A dichotomous key to 144 families includes an outline figure of a repre- sentative for all but two families. Keys are presented for all larger families, and diagnostic features are pointed out on most of the figures. Illustrations are presented for all but eight species. Of the 554 species, 439 are found primarily in depths less than 400 ft., 48 are meso- or bathypelagic species, and 67 are deepwater bottom dwelling forms rarely taken in less than 400 ft. -
Tidewater Goby (Eucyclogobius Newberryi)
Tidewater Goby (Eucyclogobius newberryi) 5-Year Review: Summary and Evaluation Photo by U.S. Fish and Wildlife Staff U.S. Fish and Wildlife Service Ventura Fish and Wildlife Office Ventura, California September 2007 5-YEAR REVIEW Tidewater Goby (Eucyclogobius newberryi) TABLE OF CONTENTS 1. GENERAL INFORMATION.............................................................................................. 3 1.1. REVIEWERS.......................................................................................................................... 3 1.2. METHODOLOGY USED TO COMPLETE THE REVIEW: .......................................................... 3 1.3. BACKGROUND:.....................................................................................................................4 2. REVIEW ANALYSIS........................................................................................................... 5 2.1. APPLICATION OF THE 1996 DISTINCT POPULATION SEGMENT (DPS) POLICY .................5 2.2. RECOVERY CRITERIA..........................................................................................................6 2.3. UPDATED INFORMATION AND CURRENT SPECIES STATUS ................................................8 2.4. SYNTHESIS .........................................................................................................................34 3. RESULTS ............................................................................................................................ 36 3.1. RECOMMENDED CLASSIFICATION ....................................................................................36 -
Using Environmental Dna and Occupancy Modeling to Estimate
USING ENVIRONMENTAL DNA AND OCCUPANCY MODELING TO ESTIMATE RANGEWIDE METAPOPULATION DYNAMICS OF THE ENDANGERED TIDEWATER GOBY EUCYCLOGOBIUS Spp. By Chad Martel A Thesis Presented to The Faculty of Humboldt State University In Partial Fulfillment of the Requirements for the Degree Masters of Science in Natural Resources: Fisheries Committee Membership Dr. Andrew P. Kinziger, Committee Chair Dr. Andre Buchheister, Committee Member Dr. Nicholas A. Som, Committee Member Dr. Rick Zechman, Graduate Program Coordinator July 2019 ABSTRACT USING ENVIRONMENTAL DNA AND OCCUPANCY MODELING TO ESTIMATE RANGEWIDE METAPOPULATION DYNAMICS IN AN ENDANGERED SPECIES, TIDEWATER GOBY EUCYCLOGOBIUS Spp. Chad Martel Conservation of species is most effective when metapopulation dynamics are well understood and incorporated into management plans, allowing managers to target conservation efforts where they will be most effective. The development of environmental DNA (eDNA) methods provides an efficient and highly sensitive approach to generate presence and absence data needed to elucidate metapopulation dynamics. Combining sample detection histories from eDNA surveys with occupancy models that account for non-detection can offer unbiased estimates of rangewide metapopulation dynamics. However, traditional occupancy models do not allow direct evaluation of the drivers of site occupancy, extinction, and colonization. Herein, I utilize a novel dynamic multiscale occupancy model that accounts for non-detection to estimate rangewide metapopulation dynamics and their drivers in an endangered fish, tidewater goby Eucyclogobius spp., a genus endemic to California estuarine habitats. I collected rangewide eDNA data from 190 sites (813 total water samples) surveyed from two years (2016 and 2017) and analyzed the data using a dynamic multiscale occupancy model. Rangewide, estimates of the proportion of sites that were occupied varied little between 2016 (0.524) and 2017 (0.517). -
Conservation Status of Imperiled North American Freshwater And
FEATURE: ENDANGERED SPECIES Conservation Status of Imperiled North American Freshwater and Diadromous Fishes ABSTRACT: This is the third compilation of imperiled (i.e., endangered, threatened, vulnerable) plus extinct freshwater and diadromous fishes of North America prepared by the American Fisheries Society’s Endangered Species Committee. Since the last revision in 1989, imperilment of inland fishes has increased substantially. This list includes 700 extant taxa representing 133 genera and 36 families, a 92% increase over the 364 listed in 1989. The increase reflects the addition of distinct populations, previously non-imperiled fishes, and recently described or discovered taxa. Approximately 39% of described fish species of the continent are imperiled. There are 230 vulnerable, 190 threatened, and 280 endangered extant taxa, and 61 taxa presumed extinct or extirpated from nature. Of those that were imperiled in 1989, most (89%) are the same or worse in conservation status; only 6% have improved in status, and 5% were delisted for various reasons. Habitat degradation and nonindigenous species are the main threats to at-risk fishes, many of which are restricted to small ranges. Documenting the diversity and status of rare fishes is a critical step in identifying and implementing appropriate actions necessary for their protection and management. Howard L. Jelks, Frank McCormick, Stephen J. Walsh, Joseph S. Nelson, Noel M. Burkhead, Steven P. Platania, Salvador Contreras-Balderas, Brady A. Porter, Edmundo Díaz-Pardo, Claude B. Renaud, Dean A. Hendrickson, Juan Jacobo Schmitter-Soto, John Lyons, Eric B. Taylor, and Nicholas E. Mandrak, Melvin L. Warren, Jr. Jelks, Walsh, and Burkhead are research McCormick is a biologist with the biologists with the U.S. -
Species and Shape Diversification Are Inversely Correlated Among Gobies and Cardinalfishes (Teleostei: Gobiiformes)
Org Divers Evol (2014) 14:419–436 DOI 10.1007/s13127-014-0175-5 ORIGINAL ARTICLE Species and shape diversification are inversely correlated among gobies and cardinalfishes (Teleostei: Gobiiformes) Christine E. Thacker Received: 7 November 2013 /Accepted: 11 May 2014 /Published online: 23 May 2014 # Gesellschaft für Biologische Systematik 2014 Abstract Gobies and their relatives are significant compo- radiation of acanthomorph fishes in which a decrease in nents of nearshore marine, estuarine, and freshwater fish species diversification is associated with an increase in mor- faunas in both tropical and temperate habitats worldwide. phological disparity. They are remarkable for their ability to adapt to and diversify in a wide range of environments. Among gobiiform clades, Keywords Gobiidae . Gobionellidae . Eleotridae . species diversities vary widely, ranging from two species in Apogonidae . Phylogeny . Morphospace Kurtidae to more than 1,000 species in Gobiidae. There is also great variation in head and body shape and in environmental preferences (fresh, brackish, or marine habitats). In this study, Introduction I used a time-calibrated molecular phylogeny, coupled with morphometric and comparative analyses, to examine evolu- Rates of both phenotypic and species diversification vary tionary rates of both speciation and morphological diversifi- widely among animal clades, and a primary goal of compar- cation among gobiiform lineages. Projection of the phylogeny ative biology is to identify and investigate the evolutionary onto a shape-derived morphospace shows that Gobioidei is and ecological correlates of these rate differences. Speciation morphometrically distinct from its sister taxon Apogonoidei, and phenotypic diversification rates may be related to factors but that families within Gobioidei overlap in morphospace. -
Universtty Microfilms International 300 N
A REVISION OF THE EASTERN PACIFIC SPECIES OF THE GOBIID FISH GENUS CHRIOLEPIS (TELEOSTEI: GOBIOIDEI) (MEXICO, LATIN AMERICA). Item Type text; Dissertation-Reproduction (electronic) Authors FINDLEY, LLOYD TALBOTT. Publisher The University of Arizona. Rights Copyright © is held by the author. Digital access to this material is made possible by the University Libraries, University of Arizona. Further transmission, reproduction or presentation (such as public display or performance) of protected items is prohibited except with permission of the author. Download date 06/10/2021 14:29:11 Link to Item http://hdl.handle.net/10150/186958 INFORMATION TO USERS This reproduction was made from a copy of a document sent to us for microfilming. While the most advanced technology has been used to photograph and reproduce this document. the quality of the reproduction is heavily dependent upon the quality of the material submitted. The following explanation of techniqucs is provided to help clarify markings or notations which may appear on this reproduction. I. The sign or "target" for pages apparently lacking from the document photographed is "Missing Page(s)". If it was possible to obtain the missing page(s) or section, they are spliced into the film along with adjacent pages. This may have necessitated cutting through an image and duplicating adjacent pages to assure complete continuity. 2. When an image on the film is obliterated with a round black mark, it is an indication of either blurred copy because of movement during exposure, duplicate copy, or copyrighted materials that should not have been filmed. For blurred pages, a good image of the page can be found in thc adjacent framc. -
Inventory, Monitoring and Impact Assessment of Marine Biodiversity in the Seri Indian Territory, Gulf of California, Mexico
INVENTORY, MONITORING AND IMPACT ASSESSMENT OF MARINE BIODIVERSITY IN THE SERI INDIAN TERRITORY, GULF OF CALIFORNIA, MEXICO by Jorge Torre Cosío ________________________ A Dissertation Submitted to the Faculty of the SCHOOL OF RENEWABLE NATURAL RESOURCES In Partial Fulfillment of the Requirements For the Degree of DOCTOR OF PHYLOSOPHY WITH A MAJOR IN RENEWABLE NATURAL RESOURCES STUDIES In the Graduate College THE UNIVERSITY OF ARIZONA 2 0 0 2 Sign defense sheet STATEMENT BY AUTHOR This dissertation has been submitted in partial fulfillment of requirements for an advanced degree at The University of Arizona and is deposited in the University Library to be made available to borrowers under rules of the Library. Brief quotations from this dissertation are allowable without special permission, provided that accurate acknowledgment of source is made. Requests for permission for extended quotation from or reproduction of this manuscript in whole or in part may be granted by the head of the major department or the Dean of the Graduate College when in his or her judgment the proposed use of the material is in the interests of scholarship. In all other instances, however, permission must be obtained from the author. SIGNED:____________________________ ACKNOWLEDGMENTS The Consejo Nacional de Ciencia y Tecnología (CONACyT) and the Wallace Research Foundation provided fellowships to the author. The Comisión Nacional para el Conocimiento y Uso de la Biodiversidad (CONABIO) (grant FB463/L179/97), World Wildlife Fund (WWF) México and Gulf of California Program (grants PM93 and QP68), and the David and Lucile Packard Foundation (grant 2000-0351) funded this study. Administrative support for part of the funds was through Conservation International – México (CIMEX) program Gulf of California Bioregion and Conservación del Territorio Insular A.C.