Bacteroidia

Thermodesulfobacteria, Ca. Dadabacteria Epsilonproteobacteria Ca. Dependentiae

Nitrospirae_1, Nitrospinae, Ca. Schekmanbacteria, Ca. NC10

Flavobacteriia

Archaea

Ca. Calescamantes Asgard group

Ca. Aminicenantes, Ca. Fischerbacteria TACK group Cytophagia Crenarchaeota ChitinophagiaSphingobacteriia

Alphaproteobacteria Euryarchaeota

Saprospiria DPANN group Phycisphaerae, Planctomycetia_1, Planctomycetia_2

Acidobacteriia Ca. Omnitrophica, Ca. Firestonebacteria, Ca. Desantisbacteria SAR324 CPR Deferribacteres, Chrysiogenetes Ca. Marinimicrobia, Calditrichaeota Nitrospirae_2 Verrucomicrobiae_1, Opitutae, Lentisphaerae Microgenomates group Ca. Tectomicrobia

Gemmatimonadetes, Ca. Glassbacteria, Ca. Eisenbacteria Aquificae ChlamydiaeFibrobacteria Parcubacteria group Ca. WOR-3, Ca. Edwardsbacteria Ca. Delongbacteria Balneolaeota Ca. Latescibacteria,Ignavibacteria Ca. Zixibacteria Eubacteria Ca. Cloacimonetes Chlorobi Betaproteobacteria Ca. Hyd24-12 Ca. Kryptonia G Terrabacteria group a m Actinobacteria m Spirochaetes Acidithiobacillia a Firmicutes p Ca. Hydrogenedentes r o Chloroflexi Ca. Coatesbacteria t e Cyanobacteria Elusimicrobia o Ca. Ca.Lindowbacteria Poribacteria b Spirochaetes Fusobacteria a c PVC group Ca. Aerophobetes t e

r Chlamydiae

i a FCB group Bacteroidetes Proteobacteria

PVC groupFCB group substitutions per site: 0.1 Firmicutes_1 Eubacteria Archaea Ca. Woesearchaeota, Ca. Diapherotrites Ca. Micrarchaeota (DPANN group) Ca. Thorarchaeota, Ca. Lokiarchaeota, Ca. Heimdallarchaeota Terrabacteria group TACK group Thermococci (Asgard group) CPR Ca. Verstraetearchaeota, Ca. Bathyarchaeota Firmicutes_3 Ca. Korarchaeota Thaumarchaeota Ca. YNPFFA

Parcubacteria group Microgenomates group Firmicutes_5 Thermoprotei Methanococci MethanobacteriaThermoplasmataMarine Group II Tenericutes_2 Ca. Wirthbacteria Archaeoglobi Tenericutes_1 MethanomicrobiaHalobacteria

Clostridia_5

Dictyoglomi Clostridia_1 Clostridia_2 Clostridia_3 Ca. WoykebacteriaCa. CPR3 Clostridia_4

Negativicutes Ca. Dojkabacteria Ca. Margulisbacteria, Ca. WOR-1 Ca. Daviesbacteria Ca. CPR2Ca. Abawacabacteria Ca. Curtissbacteria Ca. Atribacteria, Ca. Wallbacteria

Ca. Fraserbacteria, Ca. Acetothermia Ca. Levybacteria Tissierellia Ca. Beckwithbacteria,Ca. Ca.Gottesmanbacteria Chisholmbacteria Ca. WWE3

ThermotogaeCaldiserica Armatimonadetes, Ca. Fervidibacteria, Ca. KD3-62 Ca. Andersenbacteria Ca. Blackburnbacteria Synergistetes Ca. Peribacteria Ca. Berkelbacteria Ca. Doudnabacteria Ca. Roizmanbacteria Ca. AmesbacteriaCa. Shapirobacteria Ca. Melainabacteria Cyanobacteria Ca. Kuenenbacteria,Ca. Kerfeldbacteria, Ca. Komeilibacteria,Ca. Jacksonbacteria Ca. Veblenbacteria

Ca. Moranbacteria Ca. Portnoybacteria Ca. Woesebacteria Ca. Riflebacteria Ca. Buchananbacteria, Ca. Falkowbacteria Ca. Pacebacteria Chloroflexia, Anaerolineae Ca. Saccharibacteria Ca. Collierbacteria

Dehalococcoidia Ca. Terrybacteria

Thermoleophilia Ca. Azambacteria

Ca. Spechtbacteria Ca. Ca.Uhrbacteria Magasanikbacteria

Ca. Sungbacteria Ca. Yanofskybacteria Ca. Ryanbacteria Ca. Staskawiczbacteria, Ca. Nealsonbacteria, Ca. Wildermuthbacteria

Acidimicrobiia Ca. Giovannonibacteria Ca. Tagabacteria

Ca. Jorgensenbacteria, Ca. Wolfebacteria, Ca. Colwellbacteria, Coriobacteriia Ca. Brennerbacteria

Deinococcus-Thermus Ca. Vogelbacteria

Ca. Campbellbacteria

Actinobacteria Ca. Harrisonbacteria, Ca. Liptonbacteria Ca. Llyodbacteria, Ca. Yonathbacteria

Ca. Nomurabacteria

Ca. TaylorbacteriaCa. Zambryskibacteria Ca. Adlerbacteria

Ca. Kaiserbacteria