Syst. Biol. 64(1):112–126, 2015 © The Author(s) 2014. Published by Oxford University Press, on behalf of the Society of Systematic Biologists. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. DOI:10.1093/sysbio/syu080 Advance Access publication September 25, 2014 Genomic Repeat Abundances Contain Phylogenetic Signal , , , STEVEN DODSWORTH1 2,MARK W. CHASE2 3,LAURA J. KELLY1 2,ILIA J. LEITCH2,JIR͡ MACAS4,PETR NOVÁK4, ,∗ MATHIEU PIEDNOËL5,HANNA WEISS-SCHNEEWEISS6, AND ANDREW R. LEITCH1 1School of Biological and Chemical Sciences, Queen Mary University of London, Mile End Road, London E1 4NS, UK; 2Jodrell Laboratory, Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3DS, UK; 3School of Plant Biology, The University of Western Australia, Crawley WA 6009, Australia; 4Institute of Plant Molecular Biology, Biology Centre ASCR, Branišovská 31, Ceskéˇ Budˇejovice, CZ-37005, Czech Republic; 5Systematic Botany and Mycology, University of Munich (LMU), Menzinger Straße 67, 80638 München, Germany; and 6Department of Systematic and Evolutionary Botany, University of Vienna, Rennweg 14, A-1030 Vienna, Austria ∗ Correspondence to be sent to: School of Biological and Chemical Sciences, Queen Mary University of London, Mile End Road, London E1 4NS, UK; E-mail:
[email protected] Received 7 May 2014; reviews returned 28 July 2014; accepted 18 September 2014 Associate Editor: Mark Fishbein Abstract.—A large proportion of genomic information, particularly repetitive elements, is usually ignored when researchers are using next-generation sequencing.