Life, an Evidence for Creation
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Biomolecules
CHAPTER 3 Biomolecules 3.1 Carbohydrates In the previous chapter you have learnt about the cell and 3.2 Fatty Acids and its organelles. Each organelle has distinct structure and Lipids therefore performs different function. For example, cell membrane is made up of lipids and proteins. Cell wall is 3.3 Amino Acids made up of carbohydrates. Chromosomes are made up of 3.4 Protein Structure protein and nucleic acid, i.e., DNA and ribosomes are made 3.5 Nucleic Acids up of protein and nucleic acids, i.e., RNA. These ingredients of cellular organelles are also called macromolecules or biomolecules. There are four major types of biomolecules— carbohydrates, proteins, lipids and nucleic acids. Apart from being structural entities of the cell, these biomolecules play important functions in cellular processes. In this chapter you will study the structure and functions of these biomolecules. 3.1 CARBOHYDRATES Carbohydrates are one of the most abundant classes of biomolecules in nature and found widely distributed in all life forms. Chemically, they are aldehyde and ketone derivatives of the polyhydric alcohols. Major role of carbohydrates in living organisms is to function as a primary source of energy. These molecules also serve as energy stores, 2021-22 Chapter 3 Carbohydrade Final 30.018.2018.indd 50 11/14/2019 10:11:16 AM 51 BIOMOLECULES metabolic intermediates, and one of the major components of bacterial and plant cell wall. Also, these are part of DNA and RNA, which you will study later in this chapter. The cell walls of bacteria and plants are made up of polymers of carbohydrates. -
Chemistry Grade Level 10 Units 1-15
COPPELL ISD SUBJECT YEAR AT A GLANCE GRADE HEMISTRY UNITS C LEVEL 1-15 10 Program Transfer Goals ● Ask questions, recognize and define problems, and propose solutions. ● Safely and ethically collect, analyze, and evaluate appropriate data. ● Utilize, create, and analyze models to understand the world. ● Make valid claims and informed decisions based on scientific evidence. ● Effectively communicate scientific reasoning to a target audience. PACING 1st 9 Weeks 2nd 9 Weeks 3rd 9 Weeks 4th 9 Weeks Unit 1 Unit 2 Unit 3 Unit 4 Unit 5 Unit 6 Unit Unit Unit Unit Unit Unit Unit Unit Unit 7 8 9 10 11 12 13 14 15 1.5 wks 2 wks 1.5 wks 2 wks 3 wks 5.5 wks 1.5 2 2.5 2 wks 2 2 2 wks 1.5 1.5 wks wks wks wks wks wks wks Assurances for a Guaranteed and Viable Curriculum Adherence to this scope and sequence affords every member of the learning community clarity on the knowledge and skills on which each learner should demonstrate proficiency. In order to deliver a guaranteed and viable curriculum, our team commits to and ensures the following understandings: Shared Accountability: Responding -
The Practice of Chemistry Education (Paper)
CHEMISTRY EDUCATION: THE PRACTICE OF CHEMISTRY EDUCATION RESEARCH AND PRACTICE (PAPER) 2004, Vol. 5, No. 1, pp. 69-87 Concept teaching and learning/ History and philosophy of science (HPS) Juan QUÍLEZ IES José Ballester, Departamento de Física y Química, Valencia (Spain) A HISTORICAL APPROACH TO THE DEVELOPMENT OF CHEMICAL EQUILIBRIUM THROUGH THE EVOLUTION OF THE AFFINITY CONCEPT: SOME EDUCATIONAL SUGGESTIONS Received 20 September 2003; revised 11 February 2004; in final form/accepted 20 February 2004 ABSTRACT: Three basic ideas should be considered when teaching and learning chemical equilibrium: incomplete reaction, reversibility and dynamics. In this study, we concentrate on how these three ideas have eventually defined the chemical equilibrium concept. To this end, we analyse the contexts of scientific inquiry that have allowed the growth of chemical equilibrium from the first ideas of chemical affinity. At the beginning of the 18th century, chemists began the construction of different affinity tables, based on the concept of elective affinities. Berthollet reworked this idea, considering that the amount of the substances involved in a reaction was a key factor accounting for the chemical forces. Guldberg and Waage attempted to measure those forces, formulating the first affinity mathematical equations. Finally, the first ideas providing a molecular interpretation of the macroscopic properties of equilibrium reactions were presented. The historical approach of the first key ideas may serve as a basis for an appropriate sequencing of -
Andrea Deoudes, Kinetics: a Clock Reaction
A Kinetics Experiment The Rate of a Chemical Reaction: A Clock Reaction Andrea Deoudes February 2, 2010 Introduction: The rates of chemical reactions and the ability to control those rates are crucial aspects of life. Chemical kinetics is the study of the rates at which chemical reactions occur, the factors that affect the speed of reactions, and the mechanisms by which reactions proceed. The reaction rate depends on the reactants, the concentrations of the reactants, the temperature at which the reaction takes place, and any catalysts or inhibitors that affect the reaction. If a chemical reaction has a fast rate, a large portion of the molecules react to form products in a given time period. If a chemical reaction has a slow rate, a small portion of molecules react to form products in a given time period. This experiment studied the kinetics of a reaction between an iodide ion (I-1) and a -2 -1 -2 -2 peroxydisulfate ion (S2O8 ) in the first reaction: 2I + S2O8 I2 + 2SO4 . This is a relatively slow reaction. The reaction rate is dependent on the concentrations of the reactants, following -1 m -2 n the rate law: Rate = k[I ] [S2O8 ] . In order to study the kinetics of this reaction, or any reaction, there must be an experimental way to measure the concentration of at least one of the reactants or products as a function of time. -2 -2 -1 This was done in this experiment using a second reaction, 2S2O3 + I2 S4O6 + 2I , which occurred simultaneously with the reaction under investigation. Adding starch to the mixture -2 allowed the S2O3 of the second reaction to act as a built in “clock;” the mixture turned blue -2 -2 when all of the S2O3 had been consumed. -
Sugars As the Source of Energized Carbon for Abiogenesis
Astrobiology Science Conference 2010 (2010) 5095.pdf SUGARS AS THE SOURCE OF ENERGIZED CARBON FOR ABIOGENESIS. A. L. Weber, SETI Institute, NASA Ames Research Center, Mail Stop 239-4, Moffett Field, CA, 94035-1000, [email protected] Abstract: As shown in Figure 1, abiogenesis has sev- eral requirements: (A) a source of organic substrates and chemical energy that drives the synthesis of (B) useful small molecules (ammonia, monomers, metabo- lites, energy molecules), and (C) a second synthetic processs that yields large replicating and catalytic polymers that control (D) the growth and maintenance of a primitive protocell. Furthermore, the required chemical energy must be sustained and effectively coupled to individual reactions to drive biosynthesis at a rate that counters chemical degradation. Energy coupling would have been especially difficult during the origin of life before the development of powerful enzyme catalysts with 3-D active sites. To solve this energy coupling problem we have investigated abio- genesis using sugar substrates whose energized carbon groups drive spontaneous synthetic self-transformation reactions that yield: biometabolites, catalytic mole- cules, energy-rich thioesters, amino acids, plausible alternative nucleobases and cell-like microstructures [1-8]. Recently, we demonstrated that sugars drive the synthesis of ammonia from nitrite [9]. The ability of sugars to drive ammonia synthesis provides a way to generate ammonia at microscopic sites of sugar-based origins processes, thereby eliminating the need for a planet-wide source of photochemically unstable am- monia. Figure 1. Major Synthetic Processes of Abiogenesis. [1] Weber A. L. (1998) Orig. Life Evol. Biosph., 28, 259-270. [2] Weber A. -
An Overview of Biosynthesis Pathways – Inspiration for Pharmaceutical and Agrochemical Discovery
An Overview of Biosynthesis Pathways – Inspiration for Pharmaceutical and Agrochemical Discovery Alan C. Spivey [email protected] 19th Oct 2019 Lessons in Synthesis - Azadirachtin • Azadirachtin is a potent insect anti-feedant from the Indian neem tree: – exact biogenesis unknown but certainly via steroid modification: O MeO C OAc O 2 H O OH O H O OH 12 O O C 11 O 14 OH oxidative 8 O H 7 cleavage highly hindered C-C bond HO OH AcO OH AcO OH for synthesis! H H of C ring H MeO2C O AcO H tirucallol azadirachtanin A azadirachtin (cf. lanosterol) (a limanoid = tetra-nor-triterpenoid) – Intense synhtetic efforts by the groups of Nicolaou, Watanabe, Ley and others since structural elucidation in 1987. –1st total synthesis achieved in 2007 by Ley following 22 yrs of effort – ~40 researchers and over 100 person-years of research! – 64-step synthesis – Veitch Angew. Chem. Int. Ed. 2007, 46, 7629 (DOI) & Veitch Angew. Chem. Int. Ed. 2007, 46, 7633 (DOI) – Review ‘The azadirachtin story’ see: Veitch Angew. Chem. Int. Ed. 2008, 47, 9402 (DOI) Format & Scope of Presentation • Metabolism & Biosynthesis – some definitions, 1° & 2° metabolites • Shikimate Metabolites – photosynthesis & glycolysis → shikimate formation → shikimate metabolites – Glyphosate – a non-selective herbicide • Alkaloids – acetylCoA & the citric acid cycle → -amino acids → alkaloids – Opioids – powerful pain killers • Fatty Acids and Polyketides –acetylCoA → malonylCoA → fatty acids, prostaglandins, polyketides, macrolide antibiotics – NSAIDs – anti-inflammatory’s • Isoprenoids/terpenes -
Chapter 10 – Chemical Reactions Notes
Chapter 8 – Chemical Reactions Notes Chemical Reactions: Chemical reactions are processes in which the atoms of one or more substances are rearranged to form different chemical compounds. How to tell if a chemical reaction has occurred (recap): Temperature changes that can’t be accounted for. o Exothermic reactions give off energy (as in fire). o Endothermic reactions absorb energy (as in a cold pack). Spontaneous color change. o This happens when things rust, when they rot, and when they burn. Appearance of a solid when two liquids are mixed. o This solid is called a precipitate. Formation of a gas / bubbling, as when vinegar and baking soda are mixed. Overall, the most important thing to remember is that a chemical reaction produces a whole new chemical compound. Just changing the way that something looks (breaking, melting, dissolving, etc) isn’t enough to qualify something as a chemical reaction! Balancing Equations Notes: Things to keep in mind when looking at the recipes for chemical reactions: 1) The stuff before the arrow is referred to as the “reactants” or “reagents”, and the stuff after the arrow is called the “products.” 2) The number of atoms of each element is the same on both sides of the arrow. Even though there may be different numbers of molecules, the number of atoms of each element needs to remain the same to obey the law of conservation of mass. 3) The numbers in front of the formulas tell you how many molecules or moles of each chemical are involved in the reaction. 4) Equations are nothing more than chemical recipes. -
Matrix-Assisted Laser Desorption/Ionization Time-Of-Flight
Received: 26 November 2018 Revised: 29 January 2019 Accepted: 31 January 2019 DOI: 10.1002/rcm.8406 RESEARCH ARTICLE Matrix‐assisted laser desorption/ionization time‐of‐flight mass spectrometry analysis for characterization of lignin oligomers using cationization techniques and 2,5‐dihydroxyacetophenone (DHAP) matrix Amber S. Bowman | Shardrack O. Asare | Bert C. Lynn Department of Chemistry, University of Rationale: Effective analytical techniques are needed to characterize lignin Kentucky, Lexington, KY 40506, USA products for the generation of renewable carbon sources. Application of matrix‐ Correspondence assisted laser desorption/ionization (MALDI) in lignin analysis is limited because of Bert C. Lynn, Department of Chemistry, UK Mass Spectrometry Facility, University of poor ionization efficiency. In this study, we explored the potential of cationization Kentucky, A053 ASTeCC Building, Lexington, along with a 2,5‐dihydroxyacetophenone (DHAP) matrix to characterize model KY 40506‐0286, USA. Email: [email protected] lignin oligomers. Funding information Methods: Synthesized lignin oligomers were analyzed using the developed MALDI National Science Foundation, Grant/Award method. Two matrix systems, DHAP and α‐cyano‐4‐hydroxycinnamic acid (CHCA), Number: OIA 1632854 and three cations (lithium, sodium, silver) were evaluated using a Bruker UltraFlextreme time‐of‐flight mass spectrometer. Instrumental parameters, cation concentration, matrix, sample concentrations, and sample spotting protocols were optimized for improved results. Results: The DHAP/Li+ combination was effective for dimer analysis as lithium adducts. Spectra from DHP and ferric chloride oligomers showed improved signal intensities up to decamers (m/z 1823 for the FeCl3 system) and provided insights into differences in the oligomerization mechanism. Spectra from a mixed DHP oligomer system containing H, G, and S units showed contributions from all monolignols within an oligomer level (e.g. -
5.3 Controlling Chemical Reactions Vocabulary: Activation Energy
5.3 Controlling Chemical Reactions Vocabulary: Activation energy – Concentration – Catalyst – Enzyme – Inhibitor - How do reactions get started? Chemical reactions won’t begin until the reactants have enough energy. The energy is used to break the chemical bonds of the reactants. Then the atoms form the new bonds of the products. Activation Energy is the minimum amount of energy needed to start a chemical reaction. All chemical reactions need a certain amount of activation energy to get started. Usually, once a few molecules react, the rest will quickly follow. The first few reactions provide the activation energy for more molecules to react. Hydrogen and oxygen can react to form water. However, if you just mix the two gases together, nothing happens. For the reaction to start, activation energy must be added. An electric spark or adding heat can provide that energy. A few of the hydrogen and oxygen molecules will react, producing energy for even more molecules to react. Graphing Changes in Energy Every chemical reaction needs activation energy to start. Whether or not a reaction still needs more energy from the environment to keep going depends on whether it is exothermic or endothermic. The peaks on the graphs show the activation energy. Notice that at the end of the exothermic reaction, the products have less energy than the reactants. This type of reaction results in a release of energy. The burning of fuels, such as wood, natural gas, or oil, is an example of an exothermic reaction. Endothermic reactions also need activation energy to get started. In addition, they need energy to continue. -
Introduction to Chemistry
Introduction to Chemistry Author: Tracy Poulsen Digital Proofer Supported by CK-12 Foundation CK-12 Foundation is a non-profit organization with a mission to reduce the cost of textbook Introduction to Chem... materials for the K-12 market both in the U.S. and worldwide. Using an open-content, web-based Authored by Tracy Poulsen collaborative model termed the “FlexBook,” CK-12 intends to pioneer the generation and 8.5" x 11.0" (21.59 x 27.94 cm) distribution of high-quality educational content that will serve both as core text as well as provide Black & White on White paper an adaptive environment for learning. 250 pages ISBN-13: 9781478298601 Copyright © 2010, CK-12 Foundation, www.ck12.org ISBN-10: 147829860X Except as otherwise noted, all CK-12 Content (including CK-12 Curriculum Material) is made Please carefully review your Digital Proof download for formatting, available to Users in accordance with the Creative Commons Attribution/Non-Commercial/Share grammar, and design issues that may need to be corrected. Alike 3.0 Unported (CC-by-NC-SA) License (http://creativecommons.org/licenses/by-nc- sa/3.0/), as amended and updated by Creative Commons from time to time (the “CC License”), We recommend that you review your book three times, with each time focusing on a different aspect. which is incorporated herein by this reference. Specific details can be found at http://about.ck12.org/terms. Check the format, including headers, footers, page 1 numbers, spacing, table of contents, and index. 2 Review any images or graphics and captions if applicable. -
The Six Types of Chemical Reaction
The Six Types of Chemical Reaction The Six Types of Chemical Reaction · Head back to the helpdesk · Find more tutorials · Try some practice worksheets All chemical reactions can be placed into one of six categories. Here they are, in no particular order: 1) Combustion: A combustion reaction is when oxygen combines with another compound to form water and carbon dioxide. These reactions are exothermic, meaning they produce heat. An example of this kind of reaction is the burning of napthalene: C10H8 + 12 O2 ---> 10 CO2 + 4 H2O 2) Synthesis: A synthesis reaction is when two or more simple compounds combine to form a more complicated one. These reactions come in the general form of: A + B ---> AB One example of a synthesis reaction is the combination of iron and sulfur to form iron (II) sulfide: 8 Fe + S8 ---> 8 FeS 3) Decomposition: A decomposition reaction is the opposite of a synthesis reaction - a complex molecule breaks down to make simpler ones. These reactions come in the general form: AB ---> A + B One example of a decomposition reaction is the electrolysis of water to make oxygen and hydrogen gas: 2 H2O ---> 2 H2 + O2 4) Single displacement: This is when one element trades places with another element in a compound. These reactions come in the general form of: A + BC ---> AC + B One example of a single displacement reaction is when magnesium replaces hydrogen in water to make magnesium hydroxide and hydrogen gas: Mg + 2 H2O ---> Mg(OH)2 + H2 5) Double displacement: This is when the anions and cations of two different molecules switch places, http://misterguch.brinkster.net/6typesofchemicalrxn.html[12/04/2012 8:21:44 AM] The Six Types of Chemical Reaction forming two entirely different compounds. -
Origin of Life
Origin of life An explanation of what is needed for abiogenesis (or biopoiesis) Don Batten Introduction The origin of life is also known as abiogenesis or sometimes chemical evolution. Life is based on long information-rich molecules such as DNA and RNA that contain instructions for making proteins, upon which life depends. But the reading of the DNA/RNA to make proteins, and the replication of DNA or RNA to make new cells (reproduction, the mark of ‘life’) both depend on a large suite of proteins that are coded on the DNA/RNA. Both the DNA/RNA and the proteins need to be present at the same time for life to begin—a serious chicken-and-egg conundrum. Thus, the origin of life is a vexing problem for those who insist that life arose through purely natural processes (physics and chemistry alone). Some evolutionists claim that the origin of life is not a part of evolution. However, probably every evolutionary biology textbook has a section on the origin of life in the chapters on evolution. The University of California, Berkeley, has the origin of life included in their ‘Evolution 101’ course, in a section titled “From Soup to Cells—the Origin of Life”.1High-profile defenders of ‘all-things- evolutionary’, such as P.Z. Myers and Nick Matzke, agree that the origin of life is part of evolution, as does Richard Dawkins.2 A well-known evolutionist of the past, G.A. Kerkut, did make a distinction between the General Theory of Evolution (GTE), which included the origin of life, and the Special Theory of Evolution (STE) that only dealt with the diversification of life (the supposed topic of Darwin’s 1859 book).3 It is only recently that some defenders of evolution have tried to divorce the origin of life from consideration.