Embryonic and Aglomerular Kidney Development in the Bay Pipefish, Syngnathus Leptorhynchus
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The Phylum Vertebrata: a Case for Zoological Recognition Naoki Irie1,2* , Noriyuki Satoh3 and Shigeru Kuratani4
Irie et al. Zoological Letters (2018) 4:32 https://doi.org/10.1186/s40851-018-0114-y REVIEW Open Access The phylum Vertebrata: a case for zoological recognition Naoki Irie1,2* , Noriyuki Satoh3 and Shigeru Kuratani4 Abstract The group Vertebrata is currently placed as a subphylum in the phylum Chordata, together with two other subphyla, Cephalochordata (lancelets) and Urochordata (ascidians). The past three decades, have seen extraordinary advances in zoological taxonomy and the time is now ripe for reassessing whether the subphylum position is truly appropriate for vertebrates, particularly in light of recent advances in molecular phylogeny, comparative genomics, and evolutionary developmental biology. Four lines of current research are discussed here. First, molecular phylogeny has demonstrated that Deuterostomia comprises Ambulacraria (Echinodermata and Hemichordata) and Chordata (Cephalochordata, Urochordata, and Vertebrata), each clade being recognized as a mutually comparable phylum. Second, comparative genomic studies show that vertebrates alone have experienced two rounds of whole-genome duplication, which makes the composition of their gene family unique. Third, comparative gene-expression profiling of vertebrate embryos favors an hourglass pattern of development, the most conserved stage of which is recognized as a phylotypic period characterized by the establishment of a body plan definitively associated with a phylum. This mid-embryonic conservation is supported robustly in vertebrates, but only weakly in chordates. Fourth, certain complex patterns of body plan formation (especially of the head, pharynx, and somites) are recognized throughout the vertebrates, but not in any other animal groups. For these reasons, we suggest that it is more appropriate to recognize vertebrates as an independent phylum, not as a subphylum of the phylum Chordata. -
Article Evolutionary Dynamics of the OR Gene Repertoire in Teleost Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Article Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape Maxime Policarpo1, Katherine E Bemis2, James C Tyler3, Cushla J Metcalfe4, Patrick Laurenti5, Jean-Christophe Sandoz1, Sylvie Rétaux6 and Didier Casane*,1,7 1 Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. 2 NOAA National Systematics Laboratory, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. 3Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, U.S.A. 4 Independent Researcher, PO Box 21, Nambour QLD 4560, Australia. 5 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain, Paris, France 6 Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91190, Gif-sur- Yvette, France. 7 Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. * Corresponding author: e-mail: [email protected]. !1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Teleost fishes perceive their environment through a range of sensory modalities, among which olfaction often plays an important role. -
Fish) of the Helford Estuary
HELFORD RIVER SURVEY A survey of the Pisces (Fish) of the Helford Estuary A Report to the Helford Voluntary Marine Conservation Area Group funded by the World Wide Fund for Nature U.K. and English Nature P A Gainey 1999 1 Summary The Helford Voluntary Marine Conservation Area (hereafter HVMCA) was designated in 1987 and since that time a series of surveys have been carried out to examine the flora and fauna present. In this study no less that eighty species of fish have been identified within the confines of the HVMCA. Many of the more common fish were found to be present in large numbers. Several species have been designated as nationally scarce whilst others are nationally rare and receive protection at varying levels. The estuary is obviously an important nursery for several species which are of economic importance. A full list of the fish species present and the protection some of them receive is given in the Appendices Nine species of fish have been recorded as new to the HVMCA. ISBN 1 901894 30 4 HVMCA Group Office Awelon, Colborne Avenue Illogan, Redruth Cornwall TR16 4EB 2 CONTENTS Summary Location Map - Fig. 1.......................................................................................................... 1 Intertidal sites - Fig. 2 ......................................................................................................... 2 Sublittoral sites - Fig. 3 ...................................................................................................... 3 Bathymetric chart - Fig. 4 ................................................................................................. -
There Is No Highly Conserved Embryonic Stage in the Vertebrates: Implications for Current Theories of Evolution and Development
Anat Embryol (1997) 196:91–106 © Springer-Verlag 1997 REVIEW ARTICLE &roles:Michael K. Richardson · James Hanken Mayoni L. Gooneratne · Claude Pieau Albert Raynaud · Lynne Selwood · Glenda M. Wright There is no highly conserved embryonic stage in the vertebrates: implications for current theories of evolution and development &misc:Accepted: 5 April 1997 &p.1:Abstract Embryos of different species of vertebrate tal biology, and especially in the conservation of devel- share a common organisation and often look similar. opmental mechanisms, re-examination of the extent of Adult differences among species become more apparent variation in vertebrate embryos is long overdue. We pres- through divergence at later stages. Some authors have ent here the first review of the external morphology of suggested that members of most or all vertebrate clades tailbud embryos, illustrated with original specimens pass through a virtually identical, conserved stage. This from a wide range of vertebrate groups. We find that em- idea was promoted by Haeckel, and has recently been re- bryos at the tailbud stage – thought to correspond to a vived in the context of claims regarding the universality conserved stage – show variations in form due to allome- of developmental mechanisms. Thus embryonic resem- try, heterochrony, and differences in body plan and blance at the tailbud stage has been linked with a con- somite number. These variations foreshadow important served pattern of developmental gene expression – the differences in adult body form. Contrary to recent claims zootype. Haeckel’s drawings of the external morphology that all vertebrate embryos pass through a stage when of various vertebrates remain the most comprehensive they are the same size, we find a greater than 10-fold comparative data purporting to show a conserved stage. -
Reproductive Biology of the Opossum Pipefish, Microphis Brachyurus Lineatus, in Tecolutla Estuary, Veracruz, Mexico
Gulf and Caribbean Research Volume 16 Issue 1 January 2004 Reproductive Biology of the Opossum Pipefish, Microphis brachyurus lineatus, in Tecolutla Estuary, Veracruz, Mexico Martha Edith Miranda-Marure Universidad Nacional Autonoma de Mexico Jose Antonio Martinez-Perez Universidad Nacional Autonoma de Mexico Nancy J. Brown-Peterson University of Southern Mississippi, [email protected] Follow this and additional works at: https://aquila.usm.edu/gcr Part of the Marine Biology Commons Recommended Citation Miranda-Marure, M. E., J. A. Martinez-Perez and N. J. Brown-Peterson. 2004. Reproductive Biology of the Opossum Pipefish, Microphis brachyurus lineatus, in Tecolutla Estuary, Veracruz, Mexico. Gulf and Caribbean Research 16 (1): 101-108. Retrieved from https://aquila.usm.edu/gcr/vol16/iss1/17 DOI: https://doi.org/10.18785/gcr.1601.17 This Article is brought to you for free and open access by The Aquila Digital Community. It has been accepted for inclusion in Gulf and Caribbean Research by an authorized editor of The Aquila Digital Community. For more information, please contact [email protected]. Gulf and Caribbean Research Vol 16, 101–108, 2004 Manuscript received September 25, 2003; accepted December 12, 2003 REPRODUCTIVE BIOLOGY OF THE OPOSSUM PIPEFISH, MICROPHIS BRACHYURUS LINEATUS, IN TECOLUTLA ESTUARY, VERACRUZ, MEXICO Martha Edith Miranda-Marure, José Antonio Martínez-Pérez, and Nancy J. Brown-Peterson1 Laboratorio de Zoología, Universidad Nacional Autónoma de México, Facultad de Estudios Superiores Iztacala. Av., de los Barrios No.1, Los Reyes Iztacala, Tlalnepantla, Estado de México, C.P. 05490 Mexico 1Department of Coastal Sciences, The University of Southern Mississippi, 703 East Beach Drive, Ocean Springs, MS 39564 USA ABSTRACT The reproductive biology of the opossum pipefish, Microphis brachyurus lineatus, was investigated in Tecolutla estuary, Veracruz, Mexico, to determine sex ratio, size at maturity, gonadal and brood pouch histology, reproductive seasonality, and fecundity of this little-known syngnathid. -
The Genome of the Gulf Pipefish Enables Understanding of Evolutionary Innovations C
Small et al. Genome Biology (2016) 17:258 DOI 10.1186/s13059-016-1126-6 RESEARCH Open Access The genome of the Gulf pipefish enables understanding of evolutionary innovations C. M. Small1†, S. Bassham1†, J. Catchen1,2†, A. Amores3, A. M. Fuiten1, R. S. Brown1,4, A. G. Jones5 and W. A. Cresko1* Abstract Background: Evolutionary origins of derived morphologies ultimately stem from changes in protein structure, gene regulation, and gene content. A well-assembled, annotated reference genome is a central resource for pursuing these molecular phenomena underlying phenotypic evolution. We explored the genome of the Gulf pipefish (Syngnathus scovelli), which belongs to family Syngnathidae (pipefishes, seahorses, and seadragons). These fishes have dramatically derived bodies and a remarkable novelty among vertebrates, the male brood pouch. Results: We produce a reference genome, condensed into chromosomes, for the Gulf pipefish. Gene losses and other changes have occurred in pipefish hox and dlx clusters and in the tbx and pitx gene families, candidate mechanisms for the evolution of syngnathid traits, including an elongated axis and the loss of ribs, pelvic fins, and teeth. We measure gene expression changes in pregnant versus non-pregnant brood pouch tissue and characterize the genomic organization of duplicated metalloprotease genes (patristacins) recruited into the function of this novel structure. Phylogenetic inference using ultraconserved sequences provides an alternative hypothesis for the relationship between orders Syngnathiformes and Scombriformes. Comparisons of chromosome structure among percomorphs show that chromosome number in a pipefish ancestor became reduced via chromosomal fusions. Conclusions: The collected findings from this first syngnathid reference genome open a window into the genomic underpinnings of highly derived morphologies, demonstrating that de novo production of high quality and useful reference genomes is within reach of even small research groups. -
Stages of Embryonic Development of the Zebrafish
DEVELOPMENTAL DYNAMICS 2032553’10 (1995) Stages of Embryonic Development of the Zebrafish CHARLES B. KIMMEL, WILLIAM W. BALLARD, SETH R. KIMMEL, BONNIE ULLMANN, AND THOMAS F. SCHILLING Institute of Neuroscience, University of Oregon, Eugene, Oregon 97403-1254 (C.B.K., S.R.K., B.U., T.F.S.); Department of Biology, Dartmouth College, Hanover, NH 03755 (W.W.B.) ABSTRACT We describe a series of stages for Segmentation Period (10-24 h) 274 development of the embryo of the zebrafish, Danio (Brachydanio) rerio. We define seven broad peri- Pharyngula Period (24-48 h) 285 ods of embryogenesis-the zygote, cleavage, blas- Hatching Period (48-72 h) 298 tula, gastrula, segmentation, pharyngula, and hatching periods. These divisions highlight the Early Larval Period 303 changing spectrum of major developmental pro- Acknowledgments 303 cesses that occur during the first 3 days after fer- tilization, and we review some of what is known Glossary 303 about morphogenesis and other significant events that occur during each of the periods. Stages sub- References 309 divide the periods. Stages are named, not num- INTRODUCTION bered as in most other series, providing for flexi- A staging series is a tool that provides accuracy in bility and continued evolution of the staging series developmental studies. This is because different em- as we learn more about development in this spe- bryos, even together within a single clutch, develop at cies. The stages, and their names, are based on slightly different rates. We have seen asynchrony ap- morphological features, generally readily identi- pearing in the development of zebrafish, Danio fied by examination of the live embryo with the (Brachydanio) rerio, embryos fertilized simultaneously dissecting stereomicroscope. -
Humboldt Bay Fishes
Humboldt Bay Fishes ><((((º>`·._ .·´¯`·. _ .·´¯`·. ><((((º> ·´¯`·._.·´¯`·.. ><((((º>`·._ .·´¯`·. _ .·´¯`·. ><((((º> Acknowledgements The Humboldt Bay Harbor District would like to offer our sincere thanks and appreciation to the authors and photographers who have allowed us to use their work in this report. Photography and Illustrations We would like to thank the photographers and illustrators who have so graciously donated the use of their images for this publication. Andrey Dolgor Dan Gotshall Polar Research Institute of Marine Sea Challengers, Inc. Fisheries And Oceanography [email protected] [email protected] Michael Lanboeuf Milton Love [email protected] Marine Science Institute [email protected] Stephen Metherell Jacques Moreau [email protected] [email protected] Bernd Ueberschaer Clinton Bauder [email protected] [email protected] Fish descriptions contained in this report are from: Froese, R. and Pauly, D. Editors. 2003 FishBase. Worldwide Web electronic publication. http://www.fishbase.org/ 13 August 2003 Photographer Fish Photographer Bauder, Clinton wolf-eel Gotshall, Daniel W scalyhead sculpin Bauder, Clinton blackeye goby Gotshall, Daniel W speckled sanddab Bauder, Clinton spotted cusk-eel Gotshall, Daniel W. bocaccio Bauder, Clinton tube-snout Gotshall, Daniel W. brown rockfish Gotshall, Daniel W. yellowtail rockfish Flescher, Don american shad Gotshall, Daniel W. dover sole Flescher, Don stripped bass Gotshall, Daniel W. pacific sanddab Gotshall, Daniel W. kelp greenling Garcia-Franco, Mauricio louvar -
Marine Protected Species Identification Guide
Department of Primary Industries and Regional Development Marine protected species identification guide June 2021 Fisheries Occasional Publication No. 129, June 2021. Prepared by K. Travaille and M. Hourston Cover: Hawksbill turtle (Eretmochelys imbricata). Photo: Matthew Pember. Illustrations © R.Swainston/www.anima.net.au Bird images donated by Important disclaimer The Chief Executive Officer of the Department of Primary Industries and Regional Development and the State of Western Australia accept no liability whatsoever by reason of negligence or otherwise arising from the use or release of this information or any part of it. Department of Primary Industries and Regional Development Gordon Stephenson House 140 William Street PERTH WA 6000 Telephone: (08) 6551 4444 Website: dpird.wa.gov.au ABN: 18 951 343 745 ISSN: 1447 - 2058 (Print) ISBN: 978-1-877098-22-2 (Print) ISSN: 2206 - 0928 (Online) ISBN: 978-1-877098-23-9 (Online) Copyright © State of Western Australia (Department of Primary Industries and Regional Development), 2021. ii Marine protected species ID guide Contents About this guide �������������������������������������������������������������������������������������������1 Protected species legislation and international agreements 3 Reporting interactions ���������������������������������������������������������������������������������4 Marine mammals �����������������������������������������������������������������������������������������5 Relative size of cetaceans �������������������������������������������������������������������������5 -
(Teleostei: Syngnathidae: Hippocampinae) from The
Disponible en ligne sur www.sciencedirect.com Annales de Paléontologie 98 (2012) 131–151 Original article The first known fossil record of pygmy pipehorses (Teleostei: Syngnathidae: Hippocampinae) from the Miocene Coprolitic Horizon, Tunjice Hills, Slovenia La première découverte de fossiles d’hippocampes « pygmy pipehorses » (Teleostei : Syngnathidae : Hippocampinae) de l’Horizon Coprolithique du Miocène des collines de Tunjice, Slovénie a,∗ b Jure Zaloharˇ , Tomazˇ Hitij a Department of Geology, Faculty of Natural Sciences and Engineering, University of Ljubljana, Aˇskerˇceva 12, SI-1000 Ljubljana, Slovenia b Dental School, Faculty of Medicine, University of Ljubljana, Hrvatski trg 6, SI-1000 Ljubljana, Slovenia Available online 27 March 2012 Abstract The first known fossil record of pygmy pipehorses is described. The fossils were collected in the Middle Miocene (Sarmatian) beds of the Coprolitic Horizon in the Tunjice Hills, Slovenia. They belong to a new genus and species Hippotropiscis frenki, which was similar to the extant representatives of Acentronura, Amphelikturus, Idiotropiscis, and Kyonemichthys genera. Hippotropiscis frenki lived among seagrasses and macroalgae and probably also on a mud and silt bottom in the temperate shallow coastal waters of the western part of the Central Paratethys Sea. The high coronet on the head, the ridge system and the high angle at which the head is angled ventrad indicate that Hippotropiscis is most related to Idiotropiscis and Hippocampus (seahorses) and probably separated from the main seahorse lineage later than Idiotropiscis. © 2012 Elsevier Masson SAS. All rights reserved. Keywords: Seahorses; Slovenia; Coprolitic Horizon; Sarmatian; Miocene Résumé L’article décrit la première découverte connue de fossiles d’hippocampes « pygmy pipehorses ». Les fos- siles ont été trouvés dans les plages du Miocène moyen (Sarmatien) de l’horizon coprolithique dans les collines de Tunjice, en Slovénie. -
Monogenea: Gyrodactylidae) from Syngnathus Acus (Syngnathidae) from South Africa
FOLIA ParasitologICA 57[1]: 11–15, 2010 © Institute of Parasitology, Biology Centre ASCR ISSN 0015-5683 (print), ISSN 1803-6465 (online) http://www.paru.cas.cz/folia/ Gyrodactylus eyipayipi sp. n. (Monogenea: Gyrodactylidae) from Syngnathus acus (syngnathidae) from south Africa David B. Vaughan1,5, Kevin W. Christison2,5, haakon hansen3 and Andrew P. shinn4 1 Aquatic Animal Health Research, Two Oceans Aquarium, P.O. Box 50603, Victoria & Alfred Waterfront, Cape Town, 8000, South Africa; 2 Department of Environmental Affairs and Tourism, Marine and Coastal Management, Private Bag X 2, Roggebaai, 8012, South Africa; 3 National Veterinary Institute, Section for Parasitology, P.O. Box 750 Sentrum, NO-0106, Oslo, Norway; 4 Institute of Aquaculture, University of Stirling, Stirling, FK9 4LA, Scotland, UK; 5 Department of Biodiversity and Conservation Biology, University of the Western Cape, Private Bag X 17, Bellville, 7535, South Africa Abstract: Gyrodactylus eyipayipi sp. n. is described from the skin, gills, flute and male brood pouch of captive specimens of the greater pipefishSyngnathus acus L., collected for and maintained at the Two Oceans Aquarium in Cape Town, South Africa. It is the first marineGyrodactylus species reported from the African continent. The new species is compared to the three known Gyrodactylus species affecting syngnathiform hosts (G. pisculentus Williams, Kritsky, Dunnigan, Lash et Klein, 2008, G. shorti Holliman, 1963, and G. syngnathi Appleby, 1996). Although all four species have similar-sized and shaped attachment hooks with some overlap, separation of the species is possible using marginal hook morphology. The marginal hooks of G. eyipayipi measure (mean) 30 µm in total length and are larger than those of the three other species (mean, 24–28 µm). -
Evolution of Predetermined Germ Cells in Vertebrate Embryos: Implications for Macroevolution
EVOLUTION & DEVELOPMENT 5:4, 414–431 (2003) Evolution of predetermined germ cells in vertebrate embryos: implications for macroevolution Andrew D. Johnson,a,b,* Matthew Drum,b Rosemary F. Bachvarova,c Thomas Masi,b Mary E. White,d and Brian I. Crotherd aDivision of Genetics, University of Nottingham, Queen’s Medical Centre, Nottingham NG7 2UH, UK bDepartment of Biological Science, Florida State University, Tallahassee, FL 32306, USA cDepartment of Cell and Developmental Biology, Weill Medical College of Cornell University, 1300 York Avenue, New York, NY 10021, USA dDepartment of Biological Science, Southeastern Louisiana University, Hammond, LA 70402, USA *Author for correspondence (e-mail: [email protected]) SUMMARY The germ line is established in animal embryos To determine which mechanism is ancestral to the tetrapod with the formation of primordial germ cells (PGCs), which give lineage and to understand the pattern of inheritance in higher rise to gametes. Therefore, the need to form PGCs can act as vertebrates, we used a phylogenetic approach to analyze a developmental constraint by inhibiting the evolution of basic morphological processes in both groups and correlated embryonic patterning mechanisms that compromise their these with mechanisms of germ cell determination. Our results development. Conversely, events that stabilize the PGCs indicate that regulative germ cell determination is a property of may liberate these constraints. Two modes of germ cell embryos retaining ancestral embryological processes, determination exist in animal embryos: (a) either PGCs are whereas predetermined germ cells are found in embryos predetermined by the inheritance of germ cell determinants with derived morphological traits. These correlations (germ plasm) or (b) PGCs are formed by inducing signals suggest that regulative germ cell formation is an important secreted by embryonic tissues (i.e., regulative determination).