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Carmine Shiner (Notropis Percobromus) in Canada
COSEWIC Assessment and Update Status Report on the Carmine Shiner Notropis percobromus in Canada THREATENED 2006 COSEWIC COSEPAC COMMITTEE ON THE STATUS OF COMITÉ SUR LA SITUATION ENDANGERED WILDLIFE DES ESPÈCES EN PÉRIL IN CANADA AU CANADA COSEWIC status reports are working documents used in assigning the status of wildlife species suspected of being at risk. This report may be cited as follows: COSEWIC 2006. COSEWIC assessment and update status report on the carmine shiner Notropis percobromus in Canada. Committee on the Status of Endangered Wildlife in Canada. Ottawa. vi + 29 pp. (www.sararegistry.gc.ca/status/status_e.cfm). Previous reports COSEWIC 2001. COSEWIC assessment and status report on the carmine shiner Notropis percobromus and rosyface shiner Notropis rubellus in Canada. Committee on the Status of Endangered Wildlife in Canada. Ottawa. v + 17 pp. Houston, J. 1994. COSEWIC status report on the rosyface shiner Notropis rubellus in Canada. Committee on the Status of Endangered Wildlife in Canada. Ottawa. 1-17 pp. Production note: COSEWIC would like to acknowledge D.B. Stewart for writing the update status report on the carmine shiner Notropis percobromus in Canada, prepared under contract with Environment Canada, overseen and edited by Robert Campbell, Co-chair, COSEWIC Freshwater Fishes Species Specialist Subcommittee. In 1994 and again in 2001, COSEWIC assessed minnows belonging to the rosyface shiner species complex, including those in Manitoba, as rosyface shiner (Notropis rubellus). For additional copies contact: COSEWIC Secretariat c/o Canadian Wildlife Service Environment Canada Ottawa, ON K1A 0H3 Tel.: (819) 997-4991 / (819) 953-3215 Fax: (819) 994-3684 E-mail: COSEWIC/[email protected] http://www.cosewic.gc.ca Également disponible en français sous le titre Évaluation et Rapport de situation du COSEPAC sur la tête carminée (Notropis percobromus) au Canada – Mise à jour. -
Thermal Toxicity Literature Evaluation
Thermal Toxicity Literature Evaluation 2011 TECHNICAL REPORT Electric Power Research Institute 3420 Hillview Avenue, Palo Alto, California 94304-1338 • PO Box 10412, Palo Alto, California 94303-0813 USA 800.313.3774 • 650.855.2121 • [email protected] • www.epri.com Thermal Toxicity Literature Evaluation 1023095 Final Report, December 2011 EPRI Project Manager R. Goldstein ELECTRIC POWER RESEARCH INSTITUTE 3420 Hillview Avenue, Palo Alto, California 94304-1338 ▪ PO Box 10412, Palo Alto, California 94303-0813 ▪ USA 800.313.3774 ▪ 650.855.2121 ▪ [email protected] ▪ www.epri.com DISCLAIMER OF WARRANTIES AND LIMITATION OF LIABILITIES THIS DOCUMENT WAS PREPARED BY THE ORGANIZATION(S) NAMED BELOW AS AN ACCOUNT OF WORK SPONSORED OR COSPONSORED BY THE ELECTRIC POWER RESEARCH INSTITUTE, INC. (EPRI). NEITHER EPRI, ANY MEMBER OF EPRI, ANY COSPONSOR, THE ORGANIZATION(S) BELOW, NOR ANY PERSON ACTING ON BEHALF OF ANY OF THEM: (A) MAKES ANY WARRANTY OR REPRESENTATION WHATSOEVER, EXPRESS OR IMPLIED, (I) WITH RESPECT TO THE USE OF ANY INFORMATION, APPARATUS, METHOD, PROCESS, OR SIMILAR ITEM DISCLOSED IN THIS DOCUMENT, INCLUDING MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE, OR (II) THAT SUCH USE DOES NOT INFRINGE ON OR INTERFERE WITH PRIVATELY OWNED RIGHTS, INCLUDING ANY PARTY'S INTELLECTUAL PROPERTY, OR (III) THAT THIS DOCUMENT IS SUITABLE TO ANY PARTICULAR USER'S CIRCUMSTANCE; OR (B) ASSUMES RESPONSIBILITY FOR ANY DAMAGES OR OTHER LIABILITY WHATSOEVER (INCLUDING ANY CONSEQUENTIAL DAMAGES, EVEN IF EPRI OR ANY EPRI REPRESENTATIVE HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGES) RESULTING FROM YOUR SELECTION OR USE OF THIS DOCUMENT OR ANY INFORMATION, APPARATUS, METHOD, PROCESS, OR SIMILAR ITEM DISCLOSED IN THIS DOCUMENT. -
ADHERENCE and ALKALINIZATION by Elizabeth Hwang
TWO EARLY PROCESSES DURING INFECTION BY THE FUNGAL PATHOGEN CANDIDA GLABRATA: ADHERENCE AND ALKALINIZATION By Elizabeth Hwang-Wong A dissertation submitted to Johns Hopkins University in conformity with the requirements for the degree of Doctor of Philosophy Baltimore, Maryland November, 2016 Abstract Candida glabrata is a yeast pathogen of increasing diagnostic incidence. Its intrinsic resistance to antifungal agents used in standard clinical settings compels a need to further characterize and understand the pathogenesis of this species. The ability of C. glabrata to adhere to both abiotic surfaces and host cells is an essential early step in establishment of infection. It is also postulated that the capability of this pathogen to externally alkalinize an acidic environment, such as that found within an immune effector’s phagolysosome, could provide an evasive mechanism to resist initial onslaught of an innate immune response. Members of a major class of adhesins encoded by the C. glabrata genome were previously described as Epithelial Adhesins (Epas). Earlier studies have demonstrated the existence of more than 20 members of this class, many of which are encoded in subtelomeric regions of the pathogen’s genome. A major sequencing project has now defined a total complement of 25 members, a newly described one of which is shown to function as a major adhesin across multiple host cell types. In fact, functional adherence of all putative adhesins encoded in the subtelomeres of C. glabrata has been tested, and with minor exception, all are EPAs. The ligand specificities of these functional adhesins were further tested utilizing glycan arrays, and revealed clues identifying a specific EPA responsible for mediating adherence to macrophages. -
Evolutionary Genomics of a Plastic Life History Trait: Galaxias Maculatus Amphidromous and Resident Populations
EVOLUTIONARY GENOMICS OF A PLASTIC LIFE HISTORY TRAIT: GALAXIAS MACULATUS AMPHIDROMOUS AND RESIDENT POPULATIONS by María Lisette Delgado Aquije Submitted in partial fulfilment of the requirements for the degree of Doctor of Philosophy at Dalhousie University Halifax, Nova Scotia August 2021 Dalhousie University is located in Mi'kma'ki, the ancestral and unceded territory of the Mi'kmaq. We are all Treaty people. © Copyright by María Lisette Delgado Aquije, 2021 I dedicate this work to my parents, María and José, my brothers JR and Eduardo for their unconditional love and support and for always encouraging me to pursue my dreams, and to my grandparents Victoria, Estela, Jesús, and Pepe whose example of perseverance and hard work allowed me to reach this point. ii TABLE OF CONTENTS LIST OF TABLES ............................................................................................................ vii LIST OF FIGURES ........................................................................................................... ix ABSTRACT ...................................................................................................................... xii LIST OF ABBREVIATION USED ................................................................................ xiii ACKNOWLEDGMENTS ................................................................................................ xv CHAPTER 1. INTRODUCTION ....................................................................................... 1 1.1 Galaxias maculatus .................................................................................................. -
Kansas Stream Fishes
A POCKET GUIDE TO Kansas Stream Fishes ■ ■ ■ ■ ■ ■ ■ ■ ■ ■ By Jessica Mounts Illustrations © Joseph Tomelleri Sponsored by Chickadee Checkoff, Westar Energy Green Team, Kansas Department of Wildlife, Parks and Tourism, Kansas Alliance for Wetlands & Streams, and Kansas Chapter of the American Fisheries Society Published by the Friends of the Great Plains Nature Center Table of Contents • Introduction • 2 • Fish Anatomy • 3 • Species Accounts: Sturgeons (Family Acipenseridae) • 4 ■ Shovelnose Sturgeon • 5 ■ Pallid Sturgeon • 6 Minnows (Family Cyprinidae) • 7 ■ Southern Redbelly Dace • 8 ■ Western Blacknose Dace • 9 ©Ryan Waters ■ Bluntface Shiner • 10 ■ Red Shiner • 10 ■ Spotfin Shiner • 11 ■ Central Stoneroller • 12 ■ Creek Chub • 12 ■ Peppered Chub / Shoal Chub • 13 Plains Minnow ■ Silver Chub • 14 ■ Hornyhead Chub / Redspot Chub • 15 ■ Gravel Chub • 16 ■ Brassy Minnow • 17 ■ Plains Minnow / Western Silvery Minnow • 18 ■ Cardinal Shiner • 19 ■ Common Shiner • 20 ■ Bigmouth Shiner • 21 ■ • 21 Redfin Shiner Cover Photo: Photo by Ryan ■ Carmine Shiner • 22 Waters. KDWPT Stream ■ Golden Shiner • 22 Survey and Assessment ■ Program collected these Topeka Shiner • 23 male Orangespotted Sunfish ■ Bluntnose Minnow • 24 from Buckner Creek in Hodgeman County, Kansas. ■ Bigeye Shiner • 25 The fish were catalogued ■ Emerald Shiner • 26 and returned to the stream ■ Sand Shiner • 26 after the photograph. ■ Bullhead Minnow • 27 ■ Fathead Minnow • 27 ■ Slim Minnow • 28 ■ Suckermouth Minnow • 28 Suckers (Family Catostomidae) • 29 ■ River Carpsucker • -
Phénologies, Mécanismes Et Perturbations Anthropiques Des
Phénologies, mécanismes et perturbations anthropiques des dynamiques de migration dulçaquicoles des espèces amphidromes : cas des Sicydiinae de La Réunion Raphaël Lagarde To cite this version: Raphaël Lagarde. Phénologies, mécanismes et perturbations anthropiques des dynamiques de migra- tion dulçaquicoles des espèces amphidromes : cas des Sicydiinae de La Réunion. Ecologie, Environ- nement. Université de la Réunion, 2018. Français. NNT : 2018LARE0007. tel-01879914 HAL Id: tel-01879914 https://tel.archives-ouvertes.fr/tel-01879914 Submitted on 24 Sep 2018 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. .0 Phénologies, mécanismes et perturbations anthropiques des dynamiques de migration dulçaquicoles des espèces amphidromes : cas des Sicydiinae de La Réunion Thèse pour l’obtention du titre de Docteur en biologie des populations de l’Université de La Réunion, école doctorale sciences, technologies et santé par Raphaël Lagarde Thèse dirigée par Dominique Ponton et soutenue le 25 juin 2018 devant un jury composé de : - C. ALIAUME Professeure, Université -
Animal Behavior Facilitates Eco-Evolutionary Dynamics
Animal behavior facilitates eco-evolutionary dynamics The EcoEvoInteract Scientific Network Authors: Gotanda, K.M.1* ([email protected]), Farine, D.R.2,3,4*, Kratochwil, C.F.5,6*, Laskowski, K.L.7*, Montiglio, P.O.8* 1Department of Zoology, University of Cambridge; www.kiyokogotanda.com @photopidge 2Department of Collective Behavior, Max Planck Institute of Animal Behavior, Konstanz 3Department of Biology, University of Konstanz 4Centre for the Advanced Study of Collective Behavior, University of Konstanz 5Chair in Zoology and Evolutionary Biology, Department of Biology, University of Konstanz 6Zukunftskolleg, University of Konstanz, Konstanz, Germany 7Department of Evolution and Ecology, University of California Davis 8Department of Biological Sciences, University of Quebec at Montreal *All authors contributed equally Keywords: evo-evolutionary dynamics, Hamilton's Rule, functional response, predator-prey cycles, dispersal, selfish herd theory 1 Abstract The mechanisms underlying eco-evolutionary dynamics (the feedback between ecological and evolutionary processes) are often unknown. Here, we propose that classical theory from behavioral ecology can provide a greater understanding of the mechanisms underlying eco- evolutionary dynamics, and thus improve predictions about the outcomes of these dynamics. 2 Eco-Evolutionary Dynamics The recognition that ecological and evolutionary processes can occur on the same timescale, and thus interact with each other, has led to a field of interdisciplinary research often called eco- evolutionary dynamics. Eco-evolutionary dynamics are feedbacks that occur when changes in ecological processes influence evolutionary change, which then in turn feedback onto the ecology of the system. For example, dispersal rates can increase or decrease due to ecological changes (e.g. resource fluctuations) altering species (meta-)population dynamics through source- sink dynamics or shifts in gene flow and ultimately changing the selection pressures that population experiences [1]. -
University of Tartu Sign Systems Studies
University of Tartu Sign Systems Studies 32 Sign Systems Studies 32.1/2 Тартуский университет Tartu Ülikool Труды по знаковым системам Töid märgisüsteemide alalt 32.1/2 University of Tartu Sign Systems Studies volume 32.1/2 Editors: Peeter Torop Mihhail Lotman Kalevi Kull M TARTU UNIVERSITY I PRESS Tartu 2004 Sign Systems Studies is an international journal of semiotics and sign processes in culture and nature Periodicity: one volume (two issues) per year Official languages: English and Russian; Estonian for abstracts Established in 1964 Address of the editorial office: Department of Semiotics, University of Tartu Tiigi St. 78, Tartu 50410, Estonia Information and subscription: http://www.ut.ee/SOSE/sss.htm Assistant editor: Silvi Salupere International editorial board: John Deely (Houston, USA) Umberto Eco (Bologna, Italy) Vyacheslav V. Ivanov (Los Angeles, USA, and Moscow, Russia) Julia Kristeva (Paris, France) Winfried Nöth (Kassel, Germany, and Sao Paulo, Brazil) Alexander Piatigorsky (London, UK) Roland Posner (Berlin, Germany) Eero Tarasti (Helsinki, Finland) t Thure von Uexküll (Freiburg, Germany) Boris Uspenskij (Napoli, Italy) Irina Avramets (Tartu, Estonia) Jelena Grigorjeva (Tartu, Estonia) Ülle Pärli (Tartu, Estonia) Anti Randviir (Tartu, Estonia) Copyright University of Tartu, 2004 ISSN 1406-4243 Tartu University Press www.tyk.ut.ee Sign Systems Studies 32.1/2, 2004 Table of contents John Deely Semiotics and Jakob von Uexkiill’s concept of um welt .......... 11 Семиотика и понятие умвельта Якоба фон Юксюолла. Резюме ...... 33 Semiootika ja Jakob von Uexkülli omailma mõiste. Kokkuvõte ............ 33 Torsten Rüting History and significance of Jakob von Uexküll and of his institute in Hamburg ......................................................... 35 Якоб фон Юкскюлл и его институт в Гамбурге: история и значение. -
Membrane Protein Production for Structural Analysis
Chapter 1 Membrane Protein Production for Structural Analysis Isabelle Mus-Veteau, Pascal Demange and Francesca Zito 1.1 Introduction Integral membrane proteins (IMPs) account for roughly 30 % of all open reading frames in fully sequenced genomes (Liu and Rost 2001). These proteins are of main importance to living cells. They are involved in fundamental biological processes like ion, water, or solute transport, sensing changes in the cellular environment, signal transduction, and control of cell–cell contacts required to maintain cellular homeostasis and to ensure coordinated cellular activity in all organisms. IMP dys- functions are responsible for numerous pathologies like cancer, cystic fibrosis, epi- lepsy, hyperinsulinism, heart failure, hypertension, and Alzheimer diseases. How- ever, studies on these and other disorders are hampered by a lack of information about the involved IMPs. Thus, knowing the structure of IMPs and understanding their molecular mechanism not only is of fundamental biological interest but also holds great potential for enhancing human health. This is of paramount importance in the pharmaceutical industry, which produces many drugs that bind to IMPs, and recognizes the potential of many recently identified G-protein-coupled receptors (GPCRs), ion channels, and transporters, as targets for future drugs. GPCR, which account for 50 % of all drug targets, is one of the largest and most diverse IMP families encoded by more than 800 genes in the human genome (Fredriksson et al. 2003; Lundstrom 2006). However, whereas high-resolution structures are avail- able for a myriad of soluble proteins (more than 42,000 in the Protein Data Bank, I. Mus-Veteau () Institute for Molecular and Cellular Pharmacology, UMR-CNRS 7275, University of Nice-Sophia Antipolis, Valbonne, France e-mail: [email protected] P. -
On the Evolutionary and Behavioral Dynamics of Social Coordination: Models and Theoretical Aspects
On the Evolutionary and Behavioral Dynamics of Social Coordination: Models and Theoretical Aspects Ezequiel Alejandro Di Paolo Submitted for the degree of DPhil University of Sussex January, 1999 Declaration I hereby declare that this thesis has not been submitted, either in the same or different form, to this or any other University for a degree. Signature: Acknowledgements During the period I spent in Sussex I have learnt a lot, explored a lot and met a lot of interesting people who were always keen to take each other seriously in a relaxed environment. Many of the ideas presented in this thesis have matured within this context. I would like to thank my supervisor during the last three years, Phil Husbands, for providing guidance, help and being always open to new ideas no matter how strange they may have sounded initially. I would also like to thank Inman Harvey, who often played a role of supervisor himself by being always available to discuss problems and make useful suggestions which often were strangely radical and down-to-earth at the same time. Seth Bullock and Jason Noble contributed a lot to this thesis. The many opportunities in which we discussed our work and the work of others have often been key moments in the development of my research. I am very grateful to them. I must also thank the help I got from other people inside and outside COGS in the form of comments on my work, discussions and suggestions: Guillermo Abramson, Ron Chrisley, Dave Cliff, Kerstin Dautenhahn, Joe Faith, Ronald Lemmen, Matt Quinn, Lars Risan, Anil Seth, Oli Sharpe and Mike Wheeler. -
Additional File 10. Transporter Distribution in Hemiascomycete Species
Additional File 10. Transporter distribution in hemiascomycete species Transporters were identified through a two step process on the proteomes of S. cerevisiae, C. glabrata, K. lactis, D. hansenii, K. pastoris, Y. lipolytica and A. adeninivorans: 1) identification of protein products having at least three transmembrane domains using THMM (v2.0; http://www.cbs.dtu.dk/services/TMHMM-2.0), 2) identification of transporters by a Blastp search against the TCDB database16. Table S10A Transporter distribution in hemiascomycete species. Table S10B TCDB classification of transporters of A. adeninivorans. Table S10C Class of transporters amplified in A. adeninivorans compared to two other pre-CTG species. Figure S10D Phylogeny of sugar porters in A. adeninivorans and D. hansenii. 1 Table S10A Transporter distribution in hemiascomycete species Type Subfamily Species code TCDB ARAD YALI PIPA DEHA KLLA CAGL SACE Total TCDB Family 1.A.1.10 1 1 The Voltage-gated Ion Channel (VIC) Family 1.A.1.11 1 1 1 1 1 1 1 7 The Voltage-gated Ion Channel (VIC) Family 1.A.1.5 1 1 The Voltage-gated Ion Channel (VIC) Family 1.A.1.7 1 2 1 1 1 6 The Voltage-gated Ion Channel (VIC) Family 1.A.11.1 1 1 1 1 1 5 The Ammonia Transporter Channel (Amt) Family 1.A.11.2 2 2 4 The Ammonia Transporter Channel (Amt) Family 1.A.11.3 2 3 5 The Ammonia Transporter Channel (Amt) Family 1.A.15.1 1 1 1 1 1 5 The Non-selective Cation Channel-2 (NSCC2) Family 1.A.15.2 1 1 The Non-selective Cation Channel-2 (NSCC2) Family 1.A.16.1 1 1 1 1 1 5 The Yeast Stretch-Activated, Cation-Selective, -
Supplementary Tables and Figures
SUPPLEMENTARY TABLES AND FIGURES The Complete Genome Sequence of Moorella thermoacetica (f. Clostridium thermoaceticum) Elizabeth Pierce1, Gary Xie2,3, Ravi D. Barabote2,3, Elizabeth Saunders2,3, Cliff S. Han2,3, John C. Detter2,3, Paul Richardson2,4, Thomas S. Brettin2,3, Amaresh Das5, Lars G. Ljungdahl5, and Stephen W. Ragsdale1 1Department of Biological Chemistry, University of Michigan, Ann Arbor, Michigan; 2 Los Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico; 3Department of Energy Joint Genome Institute, Walnut Creek, CA; 4Lawrence Berkeley National Laboratory, Berkeley, CA; 5Department of Biochemistry and Molecular Biology, University of Georgia 1 Supplementary Table 1. Pseudogenes found in the M .thermoacetica genome. Locus Tag Product Name AA Seq Length Remnants Redundance Moth_0037 FAD/FMN-containing 462 early stop codon, 2 paralogs dehydrogenases frameshift Moth_0138 purine-cytosine permease and 417 early stop codon no paralog related proteins Moth_0164 dTDP-4-dehydrorhamnose 283 fragment, frameshift 2 paralogs reductase Moth_0166 glucose-1-phosphate 227 deletion in central region no paralog thymidylyltransferase Moth_0180 helicase 77 C-terminal fragment no paralog Moth_0276 putative resolvase 484 N-terminal fragment 1 paralog Moth_0410 response regulator receiver 45 N-terminal fragment 2 paralogs Moth_0411 GGDEF 181 C-terminal fragment 7 paralogs Moth_0413 phage integrase 97 fragment 1 paralog Moth_0472 ATPase, E1-E2 type 351 C terminal left 1 paralog Moth_0627 reverse transcriptase 97 C-terminal fragment