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Morphological and Molecular Characterization of Two Aphelenchoides Endophytic in Poplar Leaves
Journal of Nematology 48(1):28–33. 2016. Ó The Society of Nematologists 2016. Morphological and Molecular Characterization of Two Aphelenchoides Endophytic in Poplar Leaves 1 1 1 2 LYNN K. CARTA, SHIGUANG LI, ANDREA M. SKANTAR, AND GEORGE NEWCOMBE Abstract: During a long-term, large network study of the ecology of plant endophytes in native habitats, various nematodes have been found. Two poplar species, Populus angustifolia (narrowleaf cottonwood) and Populus trichocarpa (black cottonwood), are important ecological and genomic models now used in ongoing plant–pathogen–endophyte interaction studies. In this study, two different aphe- lenchid nematodes within surface-sterilized healthy leaves of these two Populus spp. in northwestern North America were discovered. Nematodes were identified and characterized microscopically and molecularly with 28S ribosomal RNA (rRNA) and 18S rRNA molecular markers. From P. angustifolia, Aphelenchoides saprophilus was inferred to be closest to another population of A. saprophilus among sequenced taxa in the 18S tree. From P. trichocarpa, Laimaphelenchus heidelbergi had a 28S sequence only 1 bp different from that of a Portuguese population, and 1 bp different from the original Australian type population. The 28S and 18S rRNA trees of Aphelenchoides and Laima- phelenchus species indicated L. heidelbergi failed to cluster with three other Laimaphelenchus species, including the type species of the genus. Therefore, we support a conservative definition of the genus Laimaphelenchus, and consider these populations to belong to Aphelenchoides, amended as Aphelenchoides heidelbergi n. comb. This is the first report of these nematode species from within aboveground leaves. The presence of these fungal-feeding nematodes can affect the balance of endophytic fungi, which are important determinants of plant health. -
ENTO-364 (Introducto
K. K. COLLEGE OF AGRICULTURE, NASHIK DEPARTMENT OF AGRICULTURAL ENTOMOLOGY THEORY NOTES Course No.:- ENTO-364 Course Title: - Introductory Nematology Credits: - 2 (1+1) Compiled By Prof. T. B. Ugale & Prof. A. S. Mochi Assistant Professor Department of Agricultural Entomology 0 Complied by Prof. T. B. Ugale & Prof. A. S. Mochi (K. K. Wagh College of Agriculture, Nashik) TEACHING SCHEDULE Semester : VI Course No. : ENTO-364 Course Title : Introductory Nematology Credits : 2(1+1) Lecture Topics Rating No. 1 Introduction- History of phytonematology and economic 4 importance. 2 General characteristics of plant parasitic nematodes. 2 3 Nematode- General morphology and biology. 4 4 Classification of nematode up to family level with 4 emphasis on group of containing economical importance genera (Taxonomic). 5 Classification of nematode by habitat. 2 6 Identification of economically important plant nematodes 4 up to generic level with the help of key and description. 7 Symptoms caused by nematodes with examples. 4 8 Interaction of nematodes with microorganism 4 9 Different methods of nematode management. 4 10 Cultural methods 4 11 Physical methods 2 12 Biological methods 4 13 Chemical methods 2 14 Entomophilic nematodes- Species Biology 2 15 Mode of action 2 16 Mass production techniques for EPN 2 Reference Books: 1) A Text Book of Plant Nematology – K. D. Upadhay & Kusum Dwivedi, Aman Publishing House 2) Fundamentals of Plant Nematology – E. J. Jonathan, S. Kumar, K. Deviranjan, G. Rajendran, Devi Publications, 8, Couvery Nagar, Karumanolapam, Trichirappalli, 620 001. 3) Plant Nematodes - Methodology, Morphology, Systematics, Biology & Ecology Majeebur Rahman Khan, Department of Plant Protection, Faculty of Agricultural Sciences, Aligarh Muslim University, Aligarh, India. -
PCR-RFLP and Sequencing Analysis of Ribosomal DNA of Bursaphelenchus Nematodes Related to Pine Wilt Disease(L)
Fundam. appl. Nemalol., 1998,21 (6), 655-666 PCR-RFLP and sequencing analysis of ribosomal DNA of Bursaphelenchus nematodes related to pine wilt disease(l) Hideaki IvVAHORI, Kaku TSUDA, Natsumi KANZAKl, Katsura IZUI and Kazuyoshi FUTAI Cmduate School ofAgriculture, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan. Accepted for publication 23 December 1997. Summary -A polymerase chain reaction - restriction fragment polymorphism (PCR-RFLP) analysis was used for the discri mination of isolates of Bursaphelenchus nematode. The isolares of B. xylophilus examined originared from Japan, the United Stares, China, and Canada and the B. mucronatus isolates from Japan, China, and France. Ribosomal DNA containing the 5.8S gene, the internai transcribed spacer region 1 and 2, and partial regions of 18S and 28S gene were amplified by PCR. Digestion of the amplified products of each nematode isolate with twelve restriction endonucleases and examination of resulting RFLP data by cluster analysis revealed a significant gap between B. xylophllus and B. mucronatus. Among the B. xylophilus isolares examined, Japanese pathogenic, Chinese and US isolates were ail identical, whereas Japanese non-pathogenic isolares were slightly distinct and Canadian isolates formed a separate cluster. Among the B. mucronalUS isolates, two Japanese isolares were very similar to each other and another Japanèse and one Chinese isolare were identical to each other. The DNA sequence data revealed 98 differences (nucleotide substitutions or gaps) in 884 bp investigated between B. xylophilus isolare and B. mucronmus isolate; DNA sequence data of Aphelenchus avenae and Aphelenchoides fragariae differed not only from those of Bursaphelenchus nematodes, but also from each other. -
Characterization and Functional Importance of Two Glycoside Hydrolase Family 16 Genes from the Rice White Tip Nematode Aphelenchoides Besseyi
animals Article Characterization and Functional Importance of Two Glycoside Hydrolase Family 16 Genes from the Rice White Tip Nematode Aphelenchoides besseyi Hui Feng , Dongmei Zhou, Paul Daly , Xiaoyu Wang and Lihui Wei * Institute of Plant Protection, Jiangsu Academy of Agricultural Sciences, 210014 Nanjing, China; [email protected] (H.F.); [email protected] (D.Z.); [email protected] (P.D.); [email protected] (X.W.) * Correspondence: [email protected] Simple Summary: The rice white tip nematode Aphelenchoides besseyi is a plant parasite but can also feed on fungi if this alternative nutrient source is available. Glucans are a major nutrient source found in fungi, and β-linked glucans from fungi can be hydrolyzed by β-glucanases from the glycoside hydrolase family 16 (GH16). The GH16 family is abundant in A. besseyi, but their functions have not been well studied, prompting the analysis of two GH16 members (AbGH16-1 and AbGH16-2). AbGH16-1 and AbGH16-2 are most similar to GH16s from fungi and probably originated from fungi via a horizontal gene transfer event. These two genes are important for feeding on fungi: transcript levels increased when cultured with the fungus Botrytis cinerea, and the purified AbGH16-1 and AbGH16-2 proteins inhibited the growth of B. cinerea. When AbGH16-1 and AbGH16-2 expression A. besseyi was silenced, the reproduction ability of was reduced. These findings have proved for the first time that GH16s contribute to the feeding and reproduction of A. besseyi, which thus provides Citation: Feng, H.; Zhou, D.; Daly, P.; novel insights into how plant-parasitic nematodes can obtain nutrition from sources other than their Wang, X.; Wei, L. -
Reaction of Some Rice Cultivars to the White Tip Nematode, Aphelenchoides Besseyi, Under Field Conditions in the Thrace Region of Turkey
Turkish Journal of Agriculture and Forestry Turk J Agric For (2015) 39: 958-966 http://journals.tubitak.gov.tr/agriculture/ © TÜBİTAK Research Article doi:10.3906/tar-1407-120 Reaction of some rice cultivars to the white tip nematode, Aphelenchoides besseyi, under field conditions in the Thrace region of Turkey 1 2, 1 1 1 1 Adnan TÜLEK , İlker KEPENEKÇİ *, Tuğba Hilal ÇİFTCİGİL , Halil SÜREK , Kemal AKIN , Recep KAYA 1 Thrace Agricultural Research Institute, Edirne, Turkey 2 Department of Plant Protection, Faculty of Agriculture, Gaziosmanpaşa University, Taşlıçiftlik, Tokat, Turkey Received: 21.07.2014 Accepted/Published Online: 06.05.2015 Printed: 30.11.2015 Abstract: The objective of this study was to evaluate the reactions of 41 rice cultivars to Aphelenchoides besseyi under field conditions in 2012 at the Thrace Agricultural Research Institute. The experiments were conducted as split plots in a randomized complete block design with 3 replications. An infected plot and an uninfected control plot were the main plots; the cultivars were subplots. As a sign of nematode damage, white tip infection ratio on the rice caused by nematodes was determined in the experiments, and the losses in yield components for the rice cultivars were calculated. There were decreases both in the grain number per panicle (by 38.3%) and in the panicle weight (by 49.7%) in the infected plot with symptoms of white tip nematode. The Ribe cultivar had the highest yield losses due to nematode damage, with 52.1%. The Asahi cultivar, which is a resistant control, had the lowest yield losses with 7.8%. There was a significant positive correlation (r = 0.5068) between the average chlorophyll values (SPAD) in the flag leaf and average white tip ratio (%). -
JOURNAL of NEMATOLOGY Molecular Identification Of
JOURNAL OF NEMATOLOGY Article | DOI: 10.2130/jofnem-2020-117 e2020-117 | Vol. 52 Molecular identification of Bursaphelenchus cocophilus associated to oil palm (Elaeis guineensis) crops in Tibu (North Santander, Colombia) Greicy Andrea Sarria1,*, Donald Riascos-Ortiz2, Hector Camilo Medina1, Abstract 1 3 Yuri Mestizo , Gerardo Lizarazo The red ring nematode (Bursaphelenchus cocophilus (Cobb) Baujard 1 and Francia Varón De Agudelo 1989) has been registered in oil palm crops in the North, Central 1Pests and Diseases Program, and Eastern zones of Colombia. In Tibu (North Santander), there Cenipalma, Experimental Field are doubts regarding the diagnostic and identity of the disease. Oil Palmar de La Vizcaína, Km 132 palm crops in Tibu with the external and internal symptoms were Vía Puerto Araujo-La Lizama, inspected, and tissue samples were taken from different parts of Barrancabermeja, Santander, the palm. The refrigerated samples were carried to the laboratory of 111611, Colombia. Oleoflores in Tibu for processing. The light microscopy was used for the quantification and morphometric identification of the nematodes. 2 Facultad de Agronomía de Specimens of the nematode were used for DNA extraction, to amplify la Universidad del Pacífico, the segment D2-D3 of the large subunit of ribosomal RNA (28S) Buenaventura, Valle del Cauca, and perform BLAST and a phylogeny study. The most frequently Campus Universitario, Km 13 vía symptoms were chlorosis of the young leaves, thin leaflets, collapsed, al Aeropuerto, Barrio el Triunfo, and dry lower leaves, beginning of roughening, accumulation of Colombia. arrows and short leaves. Bursaphelenchus, was recovered in most 3Extension Unit, Cenipalma, Tibu of the tissues from the samples analyzed: stem, petiole bases, Norte de Santander, 111611, inflorescences, peduncle of bunches, and base of arrows in variable Colombia. -
Aphelenchoides Fragariae
AUG11Pathogen of the month - August 2011 a b c d e Fig. 1. Leaf blotch symptoms on ferns (a), Aphelenchoides fragariae (b), tight aggregation of strawberry crown with malformed leaves (c); tail with blunt spike (d), heavily infested strawberry plant (left) adjacent to asymptomatic plant. Photo credits L. Forsberg (a) and W. O’Neill (b, c, d, e). Common Name: Bud and Leaf Nematode Classification: K: Animalia, P: Nematoda, C: Secernentea, O: Tylenchida, F: Aphelenchoididae Aphelenchoides fragariae is a foliar nematode which has an extensive host range and is widely distributed through the tropical and temperate zones around the world. It is a frequently encountered and economically damaging pest in the foliage plant and nursery industries. As its name suggests, A. fragariae is also a major pest of strawberries worldwide. It has recently been detected in Australian strawberry crops, causing some major losses, whereas historically A. besseyi has caused problems in the Australian industry. This nematode should not be confused with A. ritzemabosi, another bud and leaf nematode that occurs mainly in chrysanthemum, or A. besseyi which causes “crimp disease” in strawberries. (Ritzema Bos, 1890) Christie, 1932 Lifecycle: A. fragariae is an obligate parasite of above On ferns, typical leaf blotch occurs in chevron-like stripes, as ground parts of plants. On strawberries, the nematode is movement seems to be delimited by veins. Leaf blotch symptoms ectoparasitic living in the folded crown and runner buds of on flowering plants appear as water soaked patches which later the plant, with feeding taking place in the folded bud stage. turn brown. A. -
Description of Aphelenchoides Turnipi N. Sp. and Redescription of A
Pakistan Journal of Nematology (2017) 35 (1): 03-12 ISSN 0255-7576 (Print) ISSN 2313-1942 (Online) www.pjn.com.pk http://dx.doi.org/10.18681/pjn.v35.i01.p03-12 Description of Aphelenchoides turnipi n. sp. and redescription of A. siddiqii with notes on A. bicaudatus (Nematoda: Aphelenchoididae) from Pakistan M. Israr1, F. Shahina2† and K. Nasira2 1Pakistan Science Foundation, 1-Constitution, Avenue, Sector G-5/2, Islamabad, Pakistan 2National Nematological Research Centre, University of Karachi, Karachi-75270, Pakistan †Corresponding author: [email protected] Abstract A new species of the genus Aphelenchoides is described from soil around the roots of turnip (Brassica rapa L.) plants collected from Mianwali, Punjab, Pakistan. Aphelenchoides turnipi n. sp. belongs to the Group 2 of Aphelenchoides species sensu Shahina with one or sometimes two mucronate structures in female tail terminus and is characterized by small body size (0.29-0.38 mm); two lateral incisures in the lateral field; small stylet with minute basal swellings (stylet: 7-9 µm); vulva at 67-69 percent of body, tail short with pointed mucro (tail = 25-30 µm); and excretory pore situated just behind the median bulb, anterior to nerve ring. Female have a short post vulval uterine sac extending 25-34% of vulva-anus distance. Also included is the first record of A. siddiqii Fortuner, 1970 from around the roots of carrot (Daucus carota L.), from Hasan Abdal, Punjab, Pakistan. Morphometric data of a known species A. bicaudatus (Imamura, 1931) Filipjev & Schuurmans Stekhoven, 1941 is also given. Keywords: Taxonomy, Aphelenchoides turnipi n. sp., A. siddiqii; A. -
Interception and Hot Water Treatment of Mites and Nematodes on Root Crops from the Pacific Islands
Biosecurity 17 Interception and hot water treatment of mites and nematodes on root crops from the Pacific Islands N.E.M. Page-Weir1, L.E. Jamieson1, N.L. Bell2, T.C. Rohan2, A. Chhagan1, G.K. Clare1, A.M. Kean1, V.A. Davis1, M.J. Griffin1 and P.G. Connolly1 1The New Zealand Institute of Plant & Food Research Limited (Plant & Food Research), Private Bag 92169, Auckland 2AgResearch Ltd, Ruakura Research Centre, Private Bag 3123, Hamilton Corresponding author: [email protected] Abstract Root crops are major food crops and export commodities in the South Pacific. However, the presence of mites and nematodes results in rejection or treatment of these crops exported to New Zealand. Current disinfestation methods relying on fumigation result in shorter produce shelf life. This paper summarises the organisms intercepted on root crops from the Pacific Islands and sent for identification in New Zealand, with particular reference to mites and nematodes. Results of a laboratory experiment examining the response of representative mite and nematode species to hot water treatment indicated times of less than 4 min at 48°C or 2 min at 49°C resulted in 99% mortality. The implications of these heat treatments for root crops are discussed. Additionally rearing methods are presented for two mite species: a mould mite and a bulb mite. These species will be relevant for use in future New Zealand and Pacific Island disinfestation studies. Keywords hot water, disinfestation, mites, nematodes, Pacific Islands, root crops. INTRODUCTION Root crops, such as taro, yam, cassava and ginger, The main interceptions on root crops exported are major food crops and export commodities to Australia and New Zealand from the Pacific in the Pacific Islands. -
Nematology Training Manual
NIESA Training Manual NEMATOLOGY TRAINING MANUAL FUNDED BY NIESA and UNIVERSITY OF NAIROBI, CROP PROTECTION DEPARTMENT CONTRIBUTORS: J. Kimenju, Z. Sibanda, H. Talwana and W. Wanjohi 1 NIESA Training Manual CHAPTER 1 TECHNIQUES FOR NEMATODE DIAGNOSIS AND HANDLING Herbert A. L. Talwana Department of Crop Science, Makerere University P. O. Box 7062, Kampala Uganda Section Objectives Going through this section will enrich you with skill to be able to: diagnose nematode problems in the field considering all aspects involved in sampling, extraction and counting of nematodes from soil and plant parts, make permanent mounts, set up and maintain nematode cultures, design experimental set-ups for tests with nematodes Section Content sampling and quantification of nematodes extraction methods for plant-parasitic nematodes, free-living nematodes from soil and plant parts mounting of nematodes, drawing and measuring of nematodes, preparation of nematode inoculum and culturing nematodes, set-up of tests for research with plant-parasitic nematodes, A. Nematode sampling Unlike some pests and diseases, nematodes cannot be monitored by observation in the field. Nematodes must be extracted for microscopic examination in the laboratory. Nematodes can be collected by sampling soil and plant materials. There is no problem in finding nematodes, but getting the species and numbers you want may be trickier. In general, natural and undisturbed habitats will yield greater diversity and more slow-growing nematode species, while temporary and/or disturbed habitats will yield fewer and fast- multiplying species. Sampling considerations Getting nematodes in a sample that truly represent the underlying population at a given time requires due attention to sample size and depth, time and pattern of sampling, and handling and storage of samples. -
Transcriptome Analysis of the Chrysanthemum Foliar Nematode, Aphelenchoides Ritzemabosi (Aphelenchida: Aphelenchoididae)
RESEARCH ARTICLE Transcriptome Analysis of the Chrysanthemum Foliar Nematode, Aphelenchoides ritzemabosi (Aphelenchida: Aphelenchoididae) Yu Xiang☯, Dong-Wei Wang☯, Jun-Yi Li, Hui Xie*, Chun-Ling Xu, Yu Li¤ Laboratory of Plant Nematology and Research Center of Nematodes of Plant Quarantine, Department of Plant Pathology, College of Agriculture, South China Agricultural University, Guangzhou, People's Republic of China a11111 ☯ These authors contributed equally to this work. ¤ Current Address: Department of Plant Pathology, College of Agriculture, South China Agricultural University, Guangzhou, People's Republic of China * [email protected] Abstract OPEN ACCESS Citation: Xiang Y, Wang D-W, Li J-Y, Xie H, Xu C- The chrysanthemum foliar nematode (CFN), Aphelenchoides ritzemabosi, is a plant para- L, Li Y (2016) Transcriptome Analysis of the sitic nematode that attacks many plants. In this study, a transcriptomes of mixed-stage pop- Chrysanthemum Foliar Nematode, Aphelenchoides ulation of CFN was sequenced on the Illumina HiSeq 2000 platform. 68.10 million Illumina ritzemabosi (Aphelenchida: Aphelenchoididae). high quality paired end reads were obtained which generated 26,817 transcripts with a PLoS ONE 11(11): e0166877. doi:10.1371/journal. pone.0166877 mean length of 1,032 bp and an N50 of 1,672 bp, of which 16,467 transcripts were anno- tated against six databases. In total, 20,311 coding region sequences (CDS), 495 simple Editor: John Jones, James Hutton Institute, UNITED KINGDOM sequence repeats (SSRs) and 8,353 single-nucleotide polymorphisms (SNPs) were pre- dicted, respectively. The CFN with the most shared sequences was B. xylophilus with Received: May 17, 2016 16,846 (62.82%) common transcripts and 10,543 (39.31%) CFN transcripts matched Accepted: November 4, 2016 sequences of all of four plant parasitic nematodes compared. -
Research/Investigación Plant-Parasitic Nematodes Associated with Rice In
RESEARCH/INVESTIGACIÓN PLANT-PARASITIC NEMATODES ASSOCIATED WITH RICE IN ECUADOR Carmen Triviño Gilces1*, Daniel Navia Santillán1, and Luis Velasco Velasco1 1Instituto Nacional de Investigaciones Agropecuarias (INIAP), Estación Experimental Litoral Sur, Crops Protectión Department, Box. 09 -017069, Guayaquil, Ecuador. *Corresponding author: carmen.trivino@iniap. gob.ec; [email protected] ABSTRACT Triviño, C., D. Navia-Santillán, and L. Velasco. Plant-parasitic nematodes associated with rice in Ecuador. Nematropica 46:45-53. The aim of this work was to analyze the frequency of occurrence, distribution, and population densities of plant-parasitic nematodes associated with rice in Guayas, Los Ríos, Manabí, El Oro, and Loja provinces, Ecuador. A total of 331 samples of roots and soil and 210 samples of paddy panicles were collected in 46 rice- growing areas. Nematodes were extracted from 10 g roots, 100 cm3 soil, and 100 seeds. The root-knot nematode, Meloidogyne graminicola, occurred at greatest frequency and had the highest population densities both in roots and soil. In irrigated rice plantations, Hirschmanniella oryzae was found most often in rainfed lowland rice, and Pratylenchus spp. were present at greatest frequency. Other nematodes identified in soil samples were species of Helicotylenchus, Criconemoides, and Tylenchorhynchus. Aphelenchoides besseyi was detected in dry seeds collected in the five provinces at varying population densities. Key words: irrigated and rainfed lowland plantation, nematode survey, Oryza sativa, root-knot nematode, white- tip nematode. RESUMEN Triviño, C., D. Navia-Santillán, y L. Velasco. Nematodos fitoparásitos asociados al cultivo de arroz en Ecuador. Nematropica 46:45-53. El objetivo de este trabajo fue analizar la frecuencia de la ocurrencia, distribución y densidad poblacional de nematodos fitoparásitos asociados al cultivo de arroz en las provincias de Guayas, Los Ríos, Manabí, El Oro y Loja, en Ecuador.