Sulfate Reducing Processes at Extreme Salinity and Temperature: Extending Its Application Window

Total Page:16

File Type:pdf, Size:1020Kb

Sulfate Reducing Processes at Extreme Salinity and Temperature: Extending Its Application Window Sulfate reducing processes at extreme salinity and temperature: extending its application window Marcus Vinícius Guerini Vallero Promotor Prof. dr. ir. G. Lettinga hoogleraar in de anaerobe zuiveringstechnologie en hergebruik van afvalstoffen Co-promotor Dr. ir. P. N. L. Lens universitair docent bij het sub-departement Milieutechnologie, Wageningen Universiteit Samenstelling promotiecommissie Prof. dr. E. Foresti University of São Paulo EESC-USP, Brazil Prof. dr. ir. A. J. M. Stams Wageningen Universiteit Prof. dr. ir. C. J. N. Buisman Wageningen Universiteit Dr. ir. R. T. van Houten TNO Milieu, Energie en Procesinnovatie Sulfate reducing processes at extreme salinity and temperature: extending its application window Marcus Vinícius Guerini Vallero Proefschrift ter verkrijging van de graad van doctor op gezag van de rector magnificus van Wageningen Universiteit, Prof. dr. ir. L. Speelman, in het openbaar te verdedigen op maandag 3 november 2003 des namiddags te vier uur in de Aula Cover: Two bioreactor concepts (UASB and SAMBaR) utilized in the investigations described in this thesis. The inserts show the respective view of the macro (sludge type) and micro (scanning electron and light microscopy) of the biomass present in each reactor concept. CIP-DATA KONINKLIKE BIBLIOTHEEK, DEN HAAG Author: Vallero, M. V. G. Title: Sulfate reducing processes at extreme salinity and temperature: extending its application window ISBN: 90-5808-909-6 Publication year: 2003 Subject headings: sulfate reduction, anaerobic, UASB, membrane bioreactor, extreme, halophilic, mesophilic, thermophilic. Thesis Wageningen University, Wageningen, the Netherlands – with references - with summary in Dutch. Aos meus pais Itamar e Maria, meu irmão Marcelo e a Marina ACKNOWLEDGEMENTS First of all I would like to thanks the Brazilian Government agency for the development of science and technology (CNPq) which sponsored the four years of my Ph.D. in Wageningen. My tenure in the Sub-department of Environmental Technology positively changed my life. I do hope that I will make a visible contribution to my country, Brazil, and possibly to the world beyond its boundaries. I would like to express my sincere gratitude to my supervisor Piet Lens for introducing me to the stinking and very interesting field of sulfate reduction. His creativity, optimism, enthusiasm and peculiar sense of humor were always inspiring. I would also like to thank to my promotor Gatze Lettinga for his goodwill and absolute commitment to ensure that I started and completed the Ph.D. program in due time. I extend my appreciation also to Dora Lettinga for her sincere hospitality. This Ph.D. period in the Netherlands would not start without the introduction to the sanitation field provided by my former research colleagues and professors in Brazil: Carlos Blundi (in memoriam), Eugênio Foresti, Marcelo Zaiat, Mario Kato, Bernardo Teixeira, Nemésio Salvador and Viviana Baldochi. For all my colleagues in Brazil I send my honest wishes of esteem and consideration. Many thanks to Paula Paulo for introducing me to the laboratories and analytical apparatus of our department. Her willingness to help and to have a delightful conversation will never be forgotten. Great part of this work would not be accomplished without the help of diligent students. I would like to show my appreciation to them for their excellent contribution: Rafa Herran, Eva Camarero, Juliana de Morais, Wenrui Xu, Yang Shuo and Alexia Gordillo. I am also grateful to the members of our dedicated technical team at the department: Geert Meijer, Ilse Gerrits, Sjoerd Hobma, Hillion Wegh and Vinnie de Wilde. The contribution of the research colleagues Bernd van Houten and Caroline Plugge from the Department of Microbiology is also highly appreciated. I would like also to extend my compliments to our industrious secretaries: Liesbeth Kesaulÿa, Anita van de Weerd and Heleen Vos. Their unreserved enthusiasm and readiness for handling the complex Dutch bureaucracy is greatly acknowledged. In order to come through this thesis, I had the pleasure to interact with many research colleagues and collaborators. Some of them have long left for greener pastures. Some of these research colleagues always came to my rescue whenever I was confronted with research pitfalls such as reactor set-up and analytical procedures. Others were always keen to invite me for unforgettable evenings savoring the excellent Belgian (ok, also Dutch) beers. It has been very pleasant to work in the delightful atmosphere with Jan Sipma, Marcel Zandvoort (thanks for the translation of Chapter 10 !), Bego Osuna, Giovanni Esposito, Francisco Cervantes (and Liz Levario), Agnieszka Popenda, Sonia Lopes, Johan Vermeulen, Joost van Buuren, Iemke Bisschops, Bas Buys, Jules van Lier, Jarno Gieteling, Sonja Parshina, Adrie Veeken, Look Hulshoff Pol, Lucas Seghezzo, Sjon Kortekaas, Robin van Leerdam, Peter van der Maas, Velu Muniandi, Nidal Mahmoud, Martijn Smit, Adriaan Mels, Jan Weijma, Loan Nguyen, Gabor Szanto, Maha Halasheh and Jaap Vogelaar. I also extend the compliments to the cycling enthusiasts of our department: Marjo Lexmond, Chiel Cuypers, Eric van Hullebusch and Marc Boncz. I do hope I will keep riding my ‘Jan Janssen’ in Brazilian soils. A warm hug I send to my Brazilian fellows Renato Leitão and André dos Santos. Thanks very much for your companionship and to make me stick to the ‘Brazilian way of life”. Os mais sinceros votos de reconhecimento e carinho eu envio aos meus queridos familiares. Considero-me uma pessoa privilegiada por poder ter trilhado todo este caminho que culmina na redação desta tese. Nada disso seria possível sem o vosso apoio irrestrito e paciência. Eu amo vocês !! If I may add just one more line, I would like to acknowledge how the companionship and love of Marina Marchioretto are important for me. Your enthusiasm and affection makes me realize how fortunate I was to have come across you. I am persuaded to believe that together we are stronger than ever. Marcus VG Vallero Wageningen, the Netherlands. November, 2003. ABSTRACT Vallero, M.V.G. (2003). Sulfate reducing processes at extreme salinity and temperature: extending its application window. Doctoral Thesis, Wageningen University, Wageningen, the Netherlands, pp.214. The characteristics of various sulfate-rich wastewaters, such as temperature, pH and salinity, are determined by the (industrial) process from which they originate, and can be far from the physiological optima of the sulfur cycle microorganisms. The main goal of the research described in this thesis was to investigate and develop high rate sulfate reducing wastewater treatment processes for the treatment of inorganic sulfate-rich wastewaters under extreme conditions, i.e. high temperature and high salinity. In this thesis, several simple organic bulk chemicals were tested as electron donor, viz. lower alcohols (methanol and ethanol) and volatile fatty acids (formate, acetate and propionate). With respect to the start-up of upflow anaerobic sludge bed (UASB) reactors at high salinity or high temperature, the results obtained in this investigation indicate that the appearance of a targeted metabolic property (sulfate reduction at high salinity or at high temperature) is independent of the strategy for biomass acclimation (direct exposure vs. stepwise exposure). The stepwise adaptation of thermophilic sulfidogenic methanol degrading biomass to a high osmolarity environment, both at 55°C or at 70°C, likely does not occur in UASB reactors, as probably no methanol halotolerant thermophilic sulfate reducing bacteria (SRB) were present in the thermophilic inoculum sludge used in the investigations described in this thesis. Exposing the sludge directly to a very high salinity (50 g NaCl.L-1) stimulated the growth of a mesophilic (30°C) propionate- and ethanol-utilizing 2- -1 -1 halotolerant SRB population, which supported high rate sulfate reduction (up to 3.6 g SO4 .L .day ) in a UASB reactor. The start-up of thermophilic (55 to 65°C) and extreme thermophilic (70°C or higher) anaerobic bioreactors inoculated with mesophilic sludges at the targeted temperature proceeded fast and stable, as it provoked the rapid selection of (extreme) thermophiles. Therefore, the key for the successful treatment of high salinity or hot wastewaters is to invest enough time for the growth of the targeted microorganism in the biomass. The results of this investigation show that the competition between SRB, methane producing archaea and acetogenic bacteria for substrate is highly dependent of the type of substrate and operational conditions imposed to the bioreactor. This thesis describes a situation where the production of acetate and methane was completely suppressed in methanol-fed sulfate reducing UASB reactors operated at 70°C. As a result, for the first time a fully sulfate reducing granular sludge has been cultivated in a methanol-fed thermophilic sulfate reducing reactor 2- -1 -1 (with sulfate reduction rates as high as 14.4 g SO4 .L .day ), provided that an operational temperature of 70°C is kept. The production of methane can be easily suppressed in thermophilic methanol fed reactors, either by running the reactor at temperatures equal or higher than 65°C or by exposing 55°C operated reactors to a short (2 days) temperature (65 – 70°C) shock. Methanogenesis can also be easily suppressed in mesophilic propionate- and ethanol-fed reactors, provided high salinity conditions prevail (e.g. above 50 mS.cm-1). It seems, however, that the production of acetate, with
Recommended publications
  • Multiple Lateral Transfers of Dissimilatory Sulfite Reductase
    JOURNAL OF BACTERIOLOGY, Oct. 2001, p. 6028–6035 Vol. 183, No. 20 0021-9193/01/$04.00ϩ0 DOI: 10.1128/JB.183.20.6028–6035.2001 Copyright © 2001, American Society for Microbiology. All Rights Reserved. Multiple Lateral Transfers of Dissimilatory Sulfite Reductase Genes between Major Lineages of Sulfate-Reducing Prokaryotes MICHAEL KLEIN,1 MICHAEL FRIEDRICH,2 ANDREW J. ROGER,3 PHILIP HUGENHOLTZ,4 SUSAN FISHBAIN,5 1 4 6 1 HEIKE ABICHT, LINDA L. BLACKALL, DAVID A. STAHL, AND MICHAEL WAGNER * 1 Lehrstuhl fu¨r Mikrobiologie, Technische Universita¨t Mu¨nchen, D-85350 Freising, and Department of Biogeochemistry, Max Planck Downloaded from Institute for Terrestrial Microbiology, D-35043-Marburg,2 Germany; Department of Biochemistry and Molecular Biology, Dalhousie University, Halifax, Nova Scotia B3H 4H7, Canada3; Advanced Wastewater Management Centre, Department of Microbiology and Parasitology, The University of Queensland, Brisbane 4072, Queensland, Australia4; Department of Civil Engineering, Northwestern University, Evanston, Illinois 60208-31095; and Department of Civil and Environmental Engineering, University of Washington, Seattle, Washington 98195-27006 Received 26 February 2001/Accepted 3 July 2001 http://jb.asm.org/ A large fragment of the dissimilatory sulfite reductase genes (dsrAB) was PCR amplified and fully sequenced from 30 reference strains representing all recognized lineages of sulfate-reducing bacteria. In addition, the sequence of the dsrAB gene homologs of the sulfite reducer Desulfitobacterium dehalogenans was determined. In contrast to previous reports, comparative analysis of all available DsrAB sequences produced a tree topology partially inconsistent with the corresponding 16S rRNA phylogeny. For example, the DsrAB sequences of -several Desulfotomaculum species (low G؉C gram-positive division) and two members of the genus Thermode sulfobacterium (a separate bacterial division) were monophyletic with ␦-proteobacterial DsrAB sequences.
    [Show full text]
  • Supplementary Information for Microbial Electrochemical Systems Outperform Fixed-Bed Biofilters for Cleaning-Up Urban Wastewater
    Electronic Supplementary Material (ESI) for Environmental Science: Water Research & Technology. This journal is © The Royal Society of Chemistry 2016 Supplementary information for Microbial Electrochemical Systems outperform fixed-bed biofilters for cleaning-up urban wastewater AUTHORS: Arantxa Aguirre-Sierraa, Tristano Bacchetti De Gregorisb, Antonio Berná, Juan José Salasc, Carlos Aragónc, Abraham Esteve-Núñezab* Fig.1S Total nitrogen (A), ammonia (B) and nitrate (C) influent and effluent average values of the coke and the gravel biofilters. Error bars represent 95% confidence interval. Fig. 2S Influent and effluent COD (A) and BOD5 (B) average values of the hybrid biofilter and the hybrid polarized biofilter. Error bars represent 95% confidence interval. Fig. 3S Redox potential measured in the coke and the gravel biofilters Fig. 4S Rarefaction curves calculated for each sample based on the OTU computations. Fig. 5S Correspondence analysis biplot of classes’ distribution from pyrosequencing analysis. Fig. 6S. Relative abundance of classes of the category ‘other’ at class level. Table 1S Influent pre-treated wastewater and effluents characteristics. Averages ± SD HRT (d) 4.0 3.4 1.7 0.8 0.5 Influent COD (mg L-1) 246 ± 114 330 ± 107 457 ± 92 318 ± 143 393 ± 101 -1 BOD5 (mg L ) 136 ± 86 235 ± 36 268 ± 81 176 ± 127 213 ± 112 TN (mg L-1) 45.0 ± 17.4 60.6 ± 7.5 57.7 ± 3.9 43.7 ± 16.5 54.8 ± 10.1 -1 NH4-N (mg L ) 32.7 ± 18.7 51.6 ± 6.5 49.0 ± 2.3 36.6 ± 15.9 47.0 ± 8.8 -1 NO3-N (mg L ) 2.3 ± 3.6 1.0 ± 1.6 0.8 ± 0.6 1.5 ± 2.0 0.9 ± 0.6 TP (mg
    [Show full text]
  • Impacts of Desulfobacterales and Chromatiales on Sulfate Reduction in The
    bioRxiv preprint doi: https://doi.org/10.1101/2020.08.16.252635; this version posted November 6, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Impacts of Desulfobacterales and Chromatiales on sulfate reduction in the 2 subtropical mangrove ecosystem as revealed by SMDB analysis 3 Shuming Mo 1, †, Jinhui Li 1, †, Bin Li 2, Ran Yu 1, Shiqing Nie 1, Zufan Zhang 1, Jianping 4 Liao 3, Qiong Jiang 1, Bing Yan 2, *, and Chengjian Jiang 1, 2 * 5 1 State Key Laboratory for Conservation and Utilization of Subtropical Agro- 6 bioresources, Guangxi Research Center for Microbial and Enzyme Engineering 7 Technology, College of Life Science and Technology, Guangxi University, Nanning 8 530004, China. 9 2 Guangxi Key Lab of Mangrove Conservation and Utilization, Guangxi Mangrove 10 Research Center, Guangxi Academy of Sciences, Beihai 536000, China. 11 3 School of Computer and Information Engineering, Nanning Normal University, 12 Nanning 530299, China. 13 † These authors contributed equally to this work. 14 *: Corresponding Author: 15 Tel: +86-771-3270736; Fax: +86-771-3237873 16 Email: [email protected] (CJ); [email protected] (BY) 17 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.08.16.252635; this version posted November 6, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity.
    [Show full text]
  • Microbial Processes in Oil Fields: Culprits, Problems, and Opportunities
    Provided for non-commercial research and educational use only. Not for reproduction, distribution or commercial use. This chapter was originally published in the book Advances in Applied Microbiology, Vol 66, published by Elsevier, and the attached copy is provided by Elsevier for the author's benefit and for the benefit of the author's institution, for non-commercial research and educational use including without limitation use in instruction at your institution, sending it to specific colleagues who know you, and providing a copy to your institution’s administrator. All other uses, reproduction and distribution, including without limitation commercial reprints, selling or licensing copies or access, or posting on open internet sites, your personal or institution’s website or repository, are prohibited. For exceptions, permission may be sought for such use through Elsevier's permissions site at: http://www.elsevier.com/locate/permissionusematerial From: Noha Youssef, Mostafa S. Elshahed, and Michael J. McInerney, Microbial Processes in Oil Fields: Culprits, Problems, and Opportunities. In Allen I. Laskin, Sima Sariaslani, and Geoffrey M. Gadd, editors: Advances in Applied Microbiology, Vol 66, Burlington: Academic Press, 2009, pp. 141-251. ISBN: 978-0-12-374788-4 © Copyright 2009 Elsevier Inc. Academic Press. Author's personal copy CHAPTER 6 Microbial Processes in Oil Fields: Culprits, Problems, and Opportunities Noha Youssef, Mostafa S. Elshahed, and Michael J. McInerney1 Contents I. Introduction 142 II. Factors Governing Oil Recovery 144 III. Microbial Ecology of Oil Reservoirs 147 A. Origins of microorganisms recovered from oil reservoirs 147 B. Microorganisms isolated from oil reservoirs 148 C. Culture-independent analysis of microbial communities in oil reservoirs 155 IV.
    [Show full text]
  • (Pelobacter) and Methanococcoides Are Responsible for Choline-Dependent Methanogenesis in a Coastal Saltmarsh Sediment
    The ISME Journal https://doi.org/10.1038/s41396-018-0269-8 ARTICLE Deltaproteobacteria (Pelobacter) and Methanococcoides are responsible for choline-dependent methanogenesis in a coastal saltmarsh sediment 1 1 1 2 3 1 Eleanor Jameson ● Jason Stephenson ● Helen Jones ● Andrew Millard ● Anne-Kristin Kaster ● Kevin J. Purdy ● 4 5 1 Ruth Airs ● J. Colin Murrell ● Yin Chen Received: 22 January 2018 / Revised: 11 June 2018 / Accepted: 26 July 2018 © The Author(s) 2018. This article is published with open access Abstract Coastal saltmarsh sediments represent an important source of natural methane emissions, much of which originates from quaternary and methylated amines, such as choline and trimethylamine. In this study, we combine DNA stable isotope 13 probing with high throughput sequencing of 16S rRNA genes and C2-choline enriched metagenomes, followed by metagenome data assembly, to identify the key microbes responsible for methanogenesis from choline. Microcosm 13 incubation with C2-choline leads to the formation of trimethylamine and subsequent methane production, suggesting that 1234567890();,: 1234567890();,: choline-dependent methanogenesis is a two-step process involving trimethylamine as the key intermediate. Amplicon sequencing analysis identifies Deltaproteobacteria of the genera Pelobacter as the major choline utilizers. Methanogenic Archaea of the genera Methanococcoides become enriched in choline-amended microcosms, indicating their role in methane formation from trimethylamine. The binning of metagenomic DNA results in the identification of bins classified as Pelobacter and Methanococcoides. Analyses of these bins reveal that Pelobacter have the genetic potential to degrade choline to trimethylamine using the choline-trimethylamine lyase pathway, whereas Methanococcoides are capable of methanogenesis using the pyrrolysine-containing trimethylamine methyltransferase pathway.
    [Show full text]
  • Distribution of Bacterial Populations in a Stratified Fjord
    APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Apr. 1996, p. 1391–1404 Vol. 62, No. 4 0099-2240/96/$04.0010 Copyright q 1996, American Society for Microbiology Distribution of Bacterial Populations in a Stratified Fjord (Mariager Fjord, Denmark) Quantified by In Situ Hybridization and Related to Chemical Gradients in the Water Column NIELS B. RAMSING,1* HENRIK FOSSING,1 TIMOTHY G. FERDELMAN,1 2 1 FINN ANDERSEN, AND BO THAMDRUP Max Planck Institute for Marine Microbiology, Bremen, Germany,1 and Nordjyllands Amt, Aalborg, Denmark2 Received 28 August 1995/Accepted 29 January 1996 The vertical distribution of major and intermediate electron acceptors and donors was measured in a shallow stratified fjord. Peaks of zero valence sulfur, Mn(IV), and Fe(III) were observed in the chemocline separating oxic surface waters from sulfidic and anoxic bottom waters. The vertical fluxes of electron acceptors and donors (principally O2 and H2S) balanced within 5%; however, the zones of oxygen reduction and sulfide oxidation were clearly separated. The pathway of electron transfer between O2 and H2S was not apparent from the distribution of sulfur, nitrogen, or metal compounds investigated. The chemical zonation was related to bacterial populations as detected by ethidium bromide (EtBr) staining and by in situ hybridization with fluorescent oligonucleotide probes of increasing specificity. About half of all EtBr-stained cells were detectable with a general oligonucleotide probe for all eubacteria when digital image analysis algorithms were used to improve sensitivity. Both EtBr staining and hybridization indicated a surprisingly uniform distribution of bacteria throughout the water column. However, the average cell size and staining intensity as well as the abundance of different morphotypes changed markedly within the chemocline.
    [Show full text]
  • Microbially Mediated Re-Oxidation of Sulfide During Dissimilatory Sulfate
    Available online at www.sciencedirect.com Geochimica et Cosmochimica Acta 75 (2011) 3469–3485 www.elsevier.com/locate/gca Microbially mediated re-oxidation of sulfide during dissimilatory sulfate reduction by Desulfobacter latus T. Eckert a,b,⇑, B. Brunner c, E.A. Edwards d, U.G. Wortmann b a School of Environmental Sciences, University of Guelph, Guelph, ON, Canada b Geobiology Isotope Laboratory, Department of Geology, University of Toronto, Toronto, ON, Canada c Max Planck Institute for Marine Microbiology, Bremen, Germany d Department of Chemical Engineering and Applied Chemistry, University of Toronto, Toronto, ON, Canada Received 25 February 2010; accepted in revised form 16 March 2011; available online 27 March 2011 Abstract Enzymatic reactions during dissimilatory sulfate reduction (DSR) are often treated as unidirectional with respect to dis- solved sulfide. However, quantitative models describing kinetic sulfur isotope fractionations during DSR consider the indi- vidual enzymatic reactions as reversible (Rees, 1973). Brunner and Bernasconi (2005) extended this line of thought, and suggested that as long as cell external sulfide (CES) concentrations are high enough, CES may diffuse back across the cyto- plasmic cell membrane and may subsequently be re-oxidized to sulfate. Here, we test this hypothesis by measuring the time evolution of the d34S-sulfate signal during DSR in closed system experiments under different levels of sulfide stress (0–20 mM and 0–40 mM total dissolved sulfide). Our results show that the measured d34S-sulfate signal is markedly different in the latter case and that the observed sulfate S-isotope time-evolution is incompatible with a Rayleigh type fractionation model.
    [Show full text]
  • Sulfate-Reducing Bacteria in Anaerobic Bioreactors Are Presented in Table 1
    Sulfate-reducing Bacteria inAnaerobi c Bioreactors Stefanie J.W.H. Oude Elferink Promotoren: dr. ir. G. Lettinga bijzonder hoogleraar ind eanaërobisch e zuiveringstechnologie en hergebruik dr. W.M. deVo s hoogleraar ind e microbiologie Co-promotor: dr. ir. AJ.M. Stams universitair docent bij deleerstoelgroe p microbiologie ^OSJO^-M'3^- Stefanie J.W.H.Oud eElferin k Sulfate-reducing Bacteria inAnaerobi c Bioreactors Proefschrift terverkrijgin g van degraa d van doctor op gezag van derecto r magnificus van deLandbouwuniversitei t Wageningen, dr. C.M. Karssen, inhe t openbaar te verdedigen opvrijda g 22me i 1998 des namiddags tehal f twee ind eAula . r.r, A tri ISBN 90 5485 8451 The research described inthi s thesiswa s financially supported by agran t ofth e Innovative Oriented Program (IOP) Committee on Environmental Biotechnology (IOP-m 90209) established by the Dutch Ministry of Economics, and a grant from Pâques BV. Environmental Technology, P.O. Box 52, 8560AB ,Balk , TheNetherlands . BIBLIOTHEEK LANDBOUWUNIVERSITEIT WAGENTNGEN 1 (J ÜOB^ . ^3"£ Stellingen 1. Inhu n lijst van mogelijke scenario's voor de anaërobe afbraak van propionaat onder sulfaatrijke condities vergeten Uberoi enBhattachary a het scenario dat ind e anaërobe waterzuiveringsreactor van depapierfabrie k teEerbee k lijkt opt etreden , namelijk de afbraak vanpropionaa t door syntrofen en sulfaatreduceerders end e afbraak van acetaat en waterstof door sulfaatreduceerders en methanogenen. Ditproefschrift, hoofdstuk 7 UberoiV, Bhattacharya SK (1995)Interactions among sulfate reducers, acetogens, and methanogens in anaerobicpropionate systems. 2. De stelling van McCartney en Oleszkiewicz dat sulfaatreduceerders inanaërob e reactoren waarschijnlijk alleen competerenme t methanogenen voor het aanwezige waterstof, omdat acetaatafbrekende sulfaatreduceerders nog nooit uit anaëroob slib waren geïsoleerd, was correct bij indiening, maar achterhaald bij publicatie.
    [Show full text]
  • Microscopic Methods for Identification of Sulfate-Reducing Bacteria From
    International Journal of Molecular Sciences Review Microscopic Methods for Identification of Sulfate-Reducing Bacteria from Various Habitats Ivan Kushkevych 1,* , Blanka Hýžová 1, Monika Vítˇezová 1 and Simon K.-M. R. Rittmann 2,* 1 Department of Experimental Biology, Faculty of Science, Masaryk University, 62500 Brno, Czech Republic; [email protected] (B.H.); [email protected] (M.V.) 2 Archaea Physiology & Biotechnology Group, Department of Functional and Evolutionary Ecology, Universität Wien, 1090 Wien, Austria * Correspondence: [email protected] (I.K.); [email protected] (S.K.-M.R.R.); Tel.: +420-549-495-315 (I.K.); +431-427-776-513 (S.K.-M.R.R.) Abstract: This paper is devoted to microscopic methods for the identification of sulfate-reducing bacteria (SRB). In this context, it describes various habitats, morphology and techniques used for the detection and identification of this very heterogeneous group of anaerobic microorganisms. SRB are present in almost every habitat on Earth, including freshwater and marine water, soils, sediments or animals. In the oil, water and gas industries, they can cause considerable economic losses due to their hydrogen sulfide production; in periodontal lesions and the colon of humans, they can cause health complications. Although the role of these bacteria in inflammatory bowel diseases is not entirely known yet, their presence is increased in patients and produced hydrogen sulfide has a cytotoxic effect. For these reasons, methods for the detection of these microorganisms were described. Apart from selected molecular techniques, including metagenomics, fluorescence microscopy was one of the applied methods. Especially fluorescence in situ hybridization (FISH) in various modifications Citation: Kushkevych, I.; Hýžová, B.; was described.
    [Show full text]
  • Supplementary Materials
    Supplementary Materials Effects of antibiotics on the bacterial community,metabolic functions and antibiotic resistance genes in mariculture sediments during enrichment culturing Meng-Qi Ye,1 Guan-Jun Chen1,2 and Zong-Jun Du *1,2 1 Marine College, Shandong University, Weihai, Shandong, 264209, China. 2State Key Laboratory of Microbial Technology, Shandong University, Qingdao, Shandong, 266237, China Authors for correspondence: Zong-Jun Du, Email: [email protected] Supplementary Tables Table S1 The information of antibiotics used in this study. Antibiotic name Class CAS NO. Inhibited pathway Mainly usage Zinc bacitracin Peptides 1405-89-6 Cell wall synthesis veterinary Ciprofloxacin Fluoroquinolone 85721-33-1 DNA synthesis veterinary and human Ampicillin sodium β-lactams 69-57-8 Cell wall synthesis veterinary and human Chloramphenicol Chloramphenicols 56-75-7 Protein synthesis veterinary and human Macrolides Tylosin 1401-69-0 Protein synthesis veterinary Tetracycline Tetracyclines 60-54-8 Aminoacyl-tRNA access veterinary and human Table S2 The dominant phyla (average abundance > 1.0%) in each treatment Treatment Dominant phyla Control (A) Proteobacteria (43.01%), Bacteroidetes(18.67%), Fusobacteria (12.91%), Firmicutes (11.74%), Chloroflexi (1.80%), Spirochaetae (1.64%), Planctomycetes (1.48%), Cloacimonetes (1.34%), Latescibacteria (1.03%) P Proteobacteria(50.24%), Bacteroidetes(19.79%), Fusobacteria (12.73%), Firmicutes (8.54%), Spirochaetae(2.92%), Synergistetes (1.98%), Q Proteobacteria (40.61%), Bacteroidetes (22.39%), Fusobacteria
    [Show full text]
  • A First Acetate-Oxidizing, Extremely Salt-Tolerant
    Extremophiles (2015) 19:899–907 DOI 10.1007/s00792-015-0765-y ORIGINAL PAPER Desulfonatronobacter acetoxydans sp. nov.,: a first acetate‑oxidizing, extremely salt‑tolerant alkaliphilic SRB from a hypersaline soda lake D. Y. Sorokin1,2 · N. A. Chernyh1 · M. N. Poroshina3 Received: 6 May 2015 / Accepted: 26 May 2015 / Published online: 18 June 2015 © The Author(s) 2015. This article is published with open access at Springerlink.com Abstract Recent intensive microbiological investigation alkaliphile, growing with butyrate at salinity up to 4 M total of sulfidogenesis in soda lakes did not result in isolation of Na+ with a pH optimum at 9.5. It can grow with sulfate as any pure cultures of sulfate-reducing bacteria (SRB) able to e-acceptor with C3–C9 VFA and also with some alcohols. The directly oxidize acetate. The sulfate-dependent acetate oxida- most interesting property of strain APT3 is its ability to grow tion at haloalkaline conditions has, so far, been only shown in with acetate as e-donor, although not with sulfate, but with two syntrophic associations of novel Syntrophobacteraceae sulfite or thiosulfate as e-acceptors. The new isolate is pro- members and haloalkaliphilic hydrogenotrophic SRB. In the posed as a new species Desulfonatronobacter acetoxydans. course of investigation of one of them, obtained from a hyper- saline soda lake in South-Western Siberia, a minor component Keywords Soda lakes · Haloalkaliphilic · Acetate was observed showing a close relation to Desulfonatrono- oxidation · Sulfate-reducing bacteria (SRB) · bacter acidivorans—a “complete oxidizing” SRB from soda Desulfobacteracea lakes. This organism became dominant in a secondary enrich- ment with propionate as e-donor and sulfate as e-acceptor.
    [Show full text]
  • Physiological Models of Geobacter Sulfurreducens and Desulfobacter Postgatei to Understand Uranium Remediation in Subsurface Systems
    University of Massachusetts Amherst ScholarWorks@UMass Amherst Doctoral Dissertations Dissertations and Theses November 2014 PHYSIOLOGICAL MODELS OF GEOBACTER SULFURREDUCENS AND DESULFOBACTER POSTGATEI TO UNDERSTAND URANIUM REMEDIATION IN SUBSURFACE SYSTEMS Roberto Orellana University of Massachusetts Amherst Follow this and additional works at: https://scholarworks.umass.edu/dissertations_2 Part of the Environmental Microbiology and Microbial Ecology Commons, and the Microbial Physiology Commons Recommended Citation Orellana, Roberto, "PHYSIOLOGICAL MODELS OF GEOBACTER SULFURREDUCENS AND DESULFOBACTER POSTGATEI TO UNDERSTAND URANIUM REMEDIATION IN SUBSURFACE SYSTEMS" (2014). Doctoral Dissertations. 278. https://doi.org/10.7275/5822237.0 https://scholarworks.umass.edu/dissertations_2/278 This Open Access Dissertation is brought to you for free and open access by the Dissertations and Theses at ScholarWorks@UMass Amherst. It has been accepted for inclusion in Doctoral Dissertations by an authorized administrator of ScholarWorks@UMass Amherst. For more information, please contact [email protected]. PHYSIOLOGICAL MODELS OF GEOBACTER SULFURREDUCENS AND DESULFOBACTER POSTGATEI TO UNDERSTAND URANIUM REMEDIATION IN SUBSURFACE SYSTEMS A Dissertation Presented by ROBERTO ORELLANA ROMAN Submitted to the Graduate School of the University of Massachusetts Amherst in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY September 2014 Microbiology Department © Copyright by Roberto Orellana Roman 2014 All Rights
    [Show full text]