The Tree of Life and a New Classification of Bony Fishes Œ
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Article Evolutionary Dynamics of the OR Gene Repertoire in Teleost Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Article Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape Maxime Policarpo1, Katherine E Bemis2, James C Tyler3, Cushla J Metcalfe4, Patrick Laurenti5, Jean-Christophe Sandoz1, Sylvie Rétaux6 and Didier Casane*,1,7 1 Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. 2 NOAA National Systematics Laboratory, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. 3Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, U.S.A. 4 Independent Researcher, PO Box 21, Nambour QLD 4560, Australia. 5 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain, Paris, France 6 Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91190, Gif-sur- Yvette, France. 7 Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. * Corresponding author: e-mail: [email protected]. !1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Teleost fishes perceive their environment through a range of sensory modalities, among which olfaction often plays an important role. -
Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary Megan E
University of South Florida Scholar Commons Graduate Theses and Dissertations Graduate School November 2017 Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary Megan E. Hepner University of South Florida, [email protected] Follow this and additional works at: https://scholarcommons.usf.edu/etd Part of the Biology Commons, Ecology and Evolutionary Biology Commons, and the Other Oceanography and Atmospheric Sciences and Meteorology Commons Scholar Commons Citation Hepner, Megan E., "Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary" (2017). Graduate Theses and Dissertations. https://scholarcommons.usf.edu/etd/7408 This Thesis is brought to you for free and open access by the Graduate School at Scholar Commons. It has been accepted for inclusion in Graduate Theses and Dissertations by an authorized administrator of Scholar Commons. For more information, please contact [email protected]. Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary by Megan E. Hepner A thesis submitted in partial fulfillment of the requirements for the degree of Master of Science Marine Science with a concentration in Marine Resource Assessment College of Marine Science University of South Florida Major Professor: Frank Muller-Karger, Ph.D. Christopher Stallings, Ph.D. Steve Gittings, Ph.D. Date of Approval: October 31st, 2017 Keywords: Species richness, biodiversity, functional diversity, species traits Copyright © 2017, Megan E. Hepner ACKNOWLEDGMENTS I am indebted to my major advisor, Dr. Frank Muller-Karger, who provided opportunities for me to strengthen my skills as a researcher on research cruises, dive surveys, and in the laboratory, and as a communicator through oral and presentations at conferences, and for encouraging my participation as a full team member in various meetings of the Marine Biodiversity Observation Network (MBON) and other science meetings. -
Phylogeny Classification Additional Readings Clupeomorpha and Ostariophysi
Teleostei - AccessScience from McGraw-Hill Education http://www.accessscience.com/content/teleostei/680400 (http://www.accessscience.com/) Article by: Boschung, Herbert Department of Biological Sciences, University of Alabama, Tuscaloosa, Alabama. Gardiner, Brian Linnean Society of London, Burlington House, Piccadilly, London, United Kingdom. Publication year: 2014 DOI: http://dx.doi.org/10.1036/1097-8542.680400 (http://dx.doi.org/10.1036/1097-8542.680400) Content Morphology Euteleostei Bibliography Phylogeny Classification Additional Readings Clupeomorpha and Ostariophysi The most recent group of actinopterygians (rayfin fishes), first appearing in the Upper Triassic (Fig. 1). About 26,840 species are contained within the Teleostei, accounting for more than half of all living vertebrates and over 96% of all living fishes. Teleosts comprise 517 families, of which 69 are extinct, leaving 448 extant families; of these, about 43% have no fossil record. See also: Actinopterygii (/content/actinopterygii/009100); Osteichthyes (/content/osteichthyes/478500) Fig. 1 Cladogram showing the relationships of the extant teleosts with the other extant actinopterygians. (J. S. Nelson, Fishes of the World, 4th ed., Wiley, New York, 2006) 1 of 9 10/7/2015 1:07 PM Teleostei - AccessScience from McGraw-Hill Education http://www.accessscience.com/content/teleostei/680400 Morphology Much of the evidence for teleost monophyly (evolving from a common ancestral form) and relationships comes from the caudal skeleton and concomitant acquisition of a homocercal tail (upper and lower lobes of the caudal fin are symmetrical). This type of tail primitively results from an ontogenetic fusion of centra (bodies of vertebrae) and the possession of paired bracing bones located bilaterally along the dorsal region of the caudal skeleton, derived ontogenetically from the neural arches (uroneurals) of the ural (tail) centra. -
Identification Guide to the Common Coatal Food Fishes of the Pacific Region-48-53
YDX Myripristis adusta Holocentridae / Soldierfish and Squirrelfish Shadowfin soldierfish Silvery-salmon pink with 1 dark 3 1 scale margins, particularly on upper body. 2 Reddish-black spot on rear margin of gill covers and 3 reddish-black margins on soft dorsal, anal and caudal fins. Max length: 30 cm FL AS CK FJ FM GU KI 2 MH MP NC NR NU PF PG PN PW SB TK TO TV VU WF WS YDX Myripristis amaena Holocentridae / Soldierfish and Squirrelfish Brick soldierfish Silvery-red with 1 dark scale 1 margins and 2 dark red band on margin of gill covers. 3 Dorsal, anal and caudal fins red without white margins. Max length: 27 cm FL AS CK FJ FM GU KI MH MP NC NR NU PF 2 3 PG PN PW SB TK TO TV VU WF WS Similar to Myripristis violacea but without white margins on soft dorsal, anal and caudal fins. YJW Myripristis berndti Holocentridae / Soldierfish and Squirrelfish Blotcheye soldierfish, bigscale soldierfish 4 White with red tints and 1 red 1 scale margins. 2 Dark margin on gill covers and 3 white margins on soft dorsal, pelvic, anal and caudal fins.4 Outer part of spiny dorsal fin orange-yellow. Max length: 28 cm FL AS CK FJ FM GU KI 2 MH MP NC NR NU PF PG PN PW SB TK TO 3 TV VU WF WS Similar to Myripristis kuntee but with much larger scales and a redder overall appearance. 48 Holocentridae / Soldierfish and Squirrelfish Myripristis kuntee YJZ Shoulderbar soldierfish 2 Silvery orange-red with 1 darker scale margins. -
Zoologische Mededelingen Uitgegeven Door Het
ZOOLOGISCHE MEDEDELINGEN UITGEGEVEN DOOR HET RIJKSMUSEUM VAN NATUURLIJKE HISTORIE TE LEIDEN (MINISTERIE VAN CULTUUR, RECREATIE EN MAATSCHAPPELIJK WERK) Deel 50 no. 8 25 november 1976 THE SYSTEMATIC POSITION OF THE CHINESE FISH MACRONES SINENSIS BLEEKER (SILUROIDEA) by K. C. JAYARAM Zoological Survey of India, Calcutta and M. BOESEMAN 1) Rijksmuseum van Natuurlijke Historie, Leiden With one plate INTRODUCTION Fishes of the genus Macrones Duméril (= Mystus Scopoli), family Bagridae, are mainly distributed from Syria in the north-west, through Pakistan, Ceylon, India, Bangladesh, Burma, Thailand and Malaya, to the East Indies. Thirty-eight species have been described in the genus, of which six are reported as occurring in China (Jayaram, 1966: 445). In an earlier communication (Jayaram, 1968: 294) it was surmised that the genus may not be found in China and that the six species described from that country be best left out of Chinese lists, or that they may be placed under the predominantly Chinese genus Pelteobagrus Bleeker. Through the kind courtesy and co-operation of Dr. Volker Mahnert, Geneva, Dr. P. Kähsbauer, Vienna and Dr. M.-L. Bauchot, Paris, it has been possible for the first author to examine the types of some of the Chinese species hitherto referred to Mystus. Their generic position and systematic status have been published elsewhere (Jayaram, 1974, 1977). It has been shown that, with the exception of two species, the other three are referable to Pelteobagrus and that even these two real Mystus species are only relicts, fastly disappearing from China. During the course of the present investigations, the iconotype of Macrones 1) The second author primarily provided some pertinent information while both authors independently came to the same conclusion regarding the status of Bleeker's species. -
Origin, Evolution and Homologies of the Weberian Apparatus: a New Insight
Int. J. Morphol., 27(2):333-354, 2009. Origin, Evolution and Homologies of the Weberian Apparatus: A New Insight Origen, Evolución y Homologías del Aparato Weberiano: Un Nuevo Acercamiento Rui Diogo DIOGO, R. Origin, evolution and homologies of the Weberian apparatus: a new insight. Int. J. Morphol., 27(2):333-354, 2009. SUMMARY: The Weberian apparatus is essentially a mechanical device improving audition, consisting of a double chain of ossicles joining the air bladder to the inner ear. Despite being one of the most notable complex systems of teleost fishes and the subject of several comparative, developmental and functional studies, there is still much controversy concerning the origin, evolution and homologies of the structures forming this apparatus. In this paper I provide a new insight on these topics, which takes into account the results of recent works on comparative anatomy, paleontology, and ontogeny as well as of a recent extensive phylogenetic analysis including not only numerous otophysan and non-otophysan extant otocephalans but also ostariophysan fossils such as †Chanoides macropoma, †Clupavus maroccanus, †Santanichthys diasii, †Lusitanichthys characiformis, †Sorbininardus apuliensis and †Tischlingerichthys viohli. According to the evidence now available, the Weberian apparatus of otophysans seems to be the outcome of a functional integration of features acquired in basal otocephalans and in basal ostariophysans, which were very likely not directly related with the functioning of this apparatus, and of features acquired in the nodes leading to the Otophysi and to the clade including the four extant otophysan orders, which could well have been the result of a selection directly related to the functioning of the apparatus. -
Annadel Cabanban Emily Capuli Rainer Froese Daniel Pauly
Biodiversity of Southeast Asian Seas , Palomares and Pauly 15 AN ANNOTATED CHECKLIST OF PHILIPPINE FLATFISHES : ECOLOGICAL IMPLICATIONS 1 Annadel Cabanban IUCN Commission on Ecosystem Management, Southeast Asia Dumaguete, Philippines; Email: [email protected] Emily Capuli SeaLifeBase Project, Aquatic Biodiversity Informatics Office Khush Hall, IRRI, Los Baños, Laguna, Philippines; Email: [email protected] Rainer Froese IFM-GEOMAR, University of Kiel Duesternbrooker Weg 20, 24105 Kiel, Germany; Email: [email protected] Daniel Pauly The Sea Around Us Project , Fisheries Centre, University of British Columbia, 2202 Main Mall, Vancouver, British Columbia, Canada, V6T 1Z4; Email: [email protected] ABSTRACT An annotated list of the flatfishes of the Philippines was assembled, covering 108 species (vs. 74 in the entire North Atlantic), and thus highlighting this country's feature of being at the center of the world's marine biodiversity. More than 80 recent references relating to Philippine flatfish are assembled. Various biological inferences are drawn from the small sizes typical of Philippine (and tropical) flatfish, and pertinent to the "systems dynamics of flatfish". This was facilitated by FishBase, which documents all data presented here, and which was used to generate the graphs supporting these biological inferences. INTRODUCTION Taxonomy, in its widest sense, is at the root of every scientific discipline, which must first define the objects it studies. Then, the attributes of these objects can be used for various classificatory and/or interpretive schemes; for example, the table of elements in chemistry or evolutionary trees in biology. Fisheries science is no different; here the object of study is a fishery, the interaction between species and certain gears, deployed at certain times in certain places. -
An Annotated Checklist of Philippine Flatfish: Ecological Implications3'
An Annotated Checklist of Philippine Flatfish: Ecological Implications3' A. Cabanbanb) E. Capulic) R. Froesec) and D. Pauly1" Abstract An annotated list of the flatfish of the Philippines was assembled, covering 108 species (vs. 74 in the entire North Atlantic), and thus highlighting this country's feature of being at the center of the world's marine biodiversity. More than 80 recent references relating to Philippine flatfish are assembled. Various biological inferences are drawn from the small sizes typical of Philippine (and tropical) flatfish, and pertinent to the "systems dynamics of flatfish". This was facilitated by the FishBase CD-ROM, which documents all data presented here, and which was used to generate the graphs supporting these biological inferences. a) For presentation at the Third International Symposium on Flatfish Ecology, 2-8 November 1996, Netherlands Institute for Sea Research (NIOZ), Texel, The Netherlands. ICLARM Contribution No. 1321. b> Borneo Marine Research Unit, Universiti Malaysia Sabah, 9th Floor Gaya Centre, Jalan Tun Fuad Stephens, Locked Bag 2073, 88999 Kota Kinabalu, Sabah, Malaysia. c) International Center for Living Aquatic Resources Management (ICLARM), MCPO Box 2631, 0718 Makati City, Philippines. d) Fisheries Centre, University of British Columbia, 2204 Main Mall, Vancouver, B.C. Canada V6T 1Z4. E- mail: [email protected]. Introduction Taxonomy, in its widest sense, is at the root of every scientific discipline, which must first define the objects it studies. Then, the attributes of these objects can be used for various classificatory and/or interpretive schemes; for example, the table of elements in chemistry or evolutionary trees in biology. Fisheries science is no different; here the object of study is a fishery, the interaction between species and certain gears, deployed at certain times in certain places. -
Otolith Description and Age-And-Growth of Kurtus Gulliveri from Northern Australia
Journal of Fish Biology (2004) 65, 354–362 doi:10.1111/j.1095-8649.2004.00454.x,availableonlineathttp://www.blackwell-synergy.com Otolith description and age-and-growth of Kurtus gulliveri from northern Australia T. M. BERRA* AND D. D. ADAY Department of Evolution, Ecology and Organismal Biology, The Ohio State University, Mansfield, OH 44906, U.S.A. (Received 15 July 2003, Accepted 22 April 2004) The sagitta of Kurtus gulliveri was ovate, moderately thick with the following attributes: lateral surface convex, mesial surface flat; dorsal margin sinuate, posterior margin rounded ventrally, ventral margin rounded and irregular; sulcus divided into ostium and cauda by constriction of dorsal and ventral margins, heterosulcoid, colliculum heteromorph; dorsal depression large and distinct, ventral groove close to margin in larger otoliths; rostrum broad and antirostrum small, separated by wide, shallow excisural notch. Otolith size was moderate, average 4Á6% standard length (LS), typical for a perciform. Annuli on 78 whole sagittae were read, and 15% of these were transversely sectioned for verification of the annuli. Males ranged from 94 to 235 mm LS and females from 95 to 284 mm LS. There was little difference in size distribution of the sample between the sexes, perhaps due to a 6 month spawning season over which young were continually added to the population. Some sexual dimorphism was noted, however, as age 2 year females were significantly larger than males of the same age. The largest fish aged was a 284 mm LS, 3 year-old female, and the oldest age reached was 4 years by two males. It appears likely that most spawning females are 2 years old, but some larger 1 year old fish may attain sexual maturity. -
Studies on the Larvae of a Few Demersal Fishes of the South West Coast of India
,.e;4o2/2 .. STUDIES ON THE LARVAE OF A FEW DEMERSAL FISHES OF THE SOUTH WEST COAST OF INDIA BY M. P. DILEEP. THESIS SUBMITTED TO THE COCHIN UNIVERSITY OF SCIENCE AND TECHNOLOGY IN PARTIAL FULFILMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY DECEMBER 1989. DECLARATION I hereby declare that the thesis entitled Studies on the larvae of a few demersal fishes of the south west coast of India has not previously formed the basis of the award of -r ,3 . fig“ " I similar title or E a i Cochin 16. December, 1989. CERTIFICATE This is to certify that this thesis is an authentic record of the work carried out by Mr. M.P. Dileep under my supervision at the UNDP/FAO/Pelagic Fishery Project, and School of Marine Sciences, Cochin University of Science <3: Technology and that no part thereof has been presented for any other degree in any University. c- """"‘ : Prof. (Dr.) C.V. Kurian Emeritus Scientist and Former Professor and Head of the Department of Marine Sciences December,Cochin 16, 1989. University (Supervising of CochinTeacher) ACKNOWLEDGEMENTS I am greatly indebted to Prof. (Dr.) C.V. Kurian, D.Sc., Retired Professor and Head of the Department of Marine Sciences, University of Cochin, for his guidance, criticisms and discussions without which this work would not have been possible. I am grateful to Dr. K.C. George, Scientist, CMFRI for the help and encouragement given during the study. My thanks are due to the authorities of UNDP/FAO/Pelagic Fishery Project Cochin, for making available the materials and laboratory facilities for the work and also to Cochin University of Science and Technology for providing me a Junior Research Fellowship. -
BREAK-OUT SESSIONS at a GLANCE THURSDAY, 24 JULY, Afternoon Sessions
2008 Joint Meeting (JMIH), Montreal, Canada BREAK-OUT SESSIONS AT A GLANCE THURSDAY, 24 JULY, Afternoon Sessions ROOM Salon Drummond West & Center Salons A&B Salons 6&7 SESSION/ Fish Ecology I Herp Behavior Fish Morphology & Histology I SYMPOSIUM MODERATOR J Knouft M Whiting M Dean 1:30 PM M Whiting M Dean Can She-male Flat Lizards (Platysaurus broadleyi) use Micro-mechanics and material properties of the Multiple Signals to Deceive Male Rivals? tessellated skeleton of cartilaginous fishes 1:45 PM J Webb M Paulissen K Conway - GDM The interopercular-preopercular articulation: a novel Is prey detection mediated by the widened lateral line Variation In Spatial Learning Within And Between Two feature suggesting a close relationship between canal system in the Lake Malawi cichlid, Aulonocara Species Of North American Skinks Psilorhynchus and labeonin cyprinids (Ostariophysi: hansbaenchi? Cypriniformes) 2:00 PM I Dolinsek M Venesky D Adriaens Homing And Straying Following Experimental Effects of Batrachochytrium dendrobatidis infections on Biting for Blood: A Novel Jaw Mechanism in Translocation Of PIT Tagged Fishes larval foraging performance Haematophagous Candirú Catfish (Vandellia sp.) 2:15 PM Z Benzaken K Summers J Bagley - GDM Taxonomy, population genetics, and body shape The tale of the two shoals: How individual experience A Key Ecological Trait Drives the Evolution of Monogamy variation of Alabama spotted bass Micropterus influences shoal behaviour in a Peruvian Poison Frog punctulatus henshalli 2:30 PM M Pyron K Parris L Chapman -
Dahunsi Ebook.Pdf
! " # $% ! "# $"#%&'() (*(+& , ! - . ! ! & - - / ! / , / 0 1 2 3 ! 2 1 1 & ' !" # !" # $ %$ ! " # $ !% ! & $ ' ' ($ ' # % % ) %* %' $ ' + " % & ' ! # $, ( $ - . ! "- ( % . % % % % $ $ $ - - - - // $$$ 0 1"1"#23." "0" )*4/ +) * !5 !& 6!7%66898& % ) - 2 : ! * & $&'()*+,+*-./+,*/0+- ; "-< %/ = -%> -%9?8@ /- A9?8@"0" )*4/ +) "3 " & 9?8@ DEDICATION To the one who brought me joy, happiness, fulfillment and makes me feel being a real man, Beulah Oluwagbemisola. 1 AKNOWLEDGEMENT I sincerely appreciate God the giver of life, by whose power and will I have achieved this feat. May all glory and honour be to His name forever. I want to use this medium to appreciate my biological father; Pastor Stephen Olaolu Olawuyi Dahunsi for his tremendous contribution to my life and academic pursuit up till this extent. He has and is still labouring so incensantly both