The Regulation of Cholesterol Absorption: Nuclear Hormone Receptors and Niemann-Pick C1 Like 1

Total Page:16

File Type:pdf, Size:1020Kb

The Regulation of Cholesterol Absorption: Nuclear Hormone Receptors and Niemann-Pick C1 Like 1 THE REGULATION OF CHOLESTEROL ABSORPTION: NUCLEAR HORMONE RECEPTORS AND NIEMANN-PICK C1 LIKE 1 APPROVED BY SUPERVISORY COMMITTEE Dr. Lourdes Malú Tansey, Ph.D. Dr. Richard G. W. Anderson, Ph.D. Dr. Kristen W. Lynch, Ph.D. Dr. Joyce J. Repa, Ph.D. Dr. David J. Mangelsdorf, Ph.D. For Mandy THE REGULATION OF CHOLESTEROL ABSORPTION: NUCLEAR HORMONE RECEPTORS AND NIEMANN-PICK C1 LIKE 1 by MARK ANDREW VALASEK DISSERTATION Presented to the Faculty of the Graduate School of Biomedical Sciences The University of Texas Southwestern Medical Center at Dallas In Partial Fulfillment of the Requirements For the Degree of DOCTOR OF PHILOSOPHY The University of Texas Southwestern Medical Center at Dallas Dallas, Texas August, 2006 ACKNOWLEDGEMENTS Many thanks go to all those who encouraged me to pursue research, especially Mike Brown, M.D. and Masashi Yanagisawa, M.D., Ph.D. I’m most thankful to my mentor, Joyce Repa, Ph.D. for adopting me into the lab and motivating me to do better science through her leadership by example. Many thanks go to our collaborators, John Dietschy, M.D., Stephen Turley, Ph.D., Richard Anderson, Ph.D, and Malu Tansey, Ph.D. who have kindly allowed me to pursue and participate in various projects and have shared their priceless experience and expertise in addition to material resources. I’m grateful for the Committee’s helpful comments and encouragement. I also would like to thank the Medical Scientist Training Program, Dennis McKearin, Ph.D., Rodney Ulane, Ph.D., Robin Downing, and Stephanie Robertson, and the NIH Pharmacology Training Grant Program, David J. Mangelsdorf, Ph.D., Alfred G. Gilman, M.D., Ph.D., Rama Ranganathan, M.D., Ph.D. and Carla Childers, who have provided both funding and counseling for this work, but also have broadened my scientific experience through insightful discussion. I greatly appreciate family and friends who have supported me throughout. My deepest gratitude is extended to my wife, Mandy, without whose dedication, wisdom, and persevering love, this work would not have been as enjoyable or even possible, and to my children, Ruby and Andrew, may they always seek to understand. THE REGULATION OF CHOLESTEROL ABSORPTION: NUCLEAR HORMONE RECEPTORS AND NIEMANN-PICK C1 LIKE 1 Publication No. Mark Andrew Valasek, Ph.D. The University of Texas Southwestern Medical Center at Dallas, 2006 Supervising Professor: Joyce J. Repa, Ph.D. Cholesterol plays fundamental roles in cellular physiology, but it is also involved in many pathophysiological processes including atherosclerosis, cholelithiasis, and some forms of neurodegenerative disease. The ability of mammals to selectively absorb cholesterol from the diet while largely excluding plant sterols has been known for more than 75 years, but the precise repertoire of molecular events necessary for this process are just beginning to be elucidated. Recently, several candidates have been put forth as putative intestinal cholesterol “permeases” responsible for cholesterol transport across the intestinal brush border. In addition, members of the nuclear receptor superfamily of v ligand-activated transcription factors are known to modulate expression of genes involved in cholesterol and bile acid homeostasis, and cholesterol absorption. Therefore, we wanted not only to clarify the essential molecular mechanisms by which cholesterol was absorbed, but also to investigate the potential role of nuclear receptors in regulating essential steps in this process. Here, we show that a candidate component of the cholesterol transport machinery, caveolin-1 (CAV1), is neither required for intestinal cholesterol transport or sensitivity to the novel cholesterol absorption blocking agent, ezetimibe. This rules out a critical role for caveolin-1 and lends further support to the contention that Niemann-Pick C1 like 1 (NPC1L1) is the bona fide intestinal cholesterol permease. Therefore to better understand new ways in which nuclear receptors could regulate cholesterol absorption, we studied nuclear receptor regulation of NPC1L1 and determined that several nuclear receptors could modulate its expression in small intestine, including peroxisome proliferator-activated receptor alpha (PPARα) and retinoid X receptor (RXR). Thus, cholesterol absorption can be regulated by nuclear receptor modulation of NPC1L1 expression. vi TABLE OF CONTENTS Title...................................................................................................................................... i Dedication........................................................................................................................... ii Acknowledgements............................................................................................................ iv Abstract............................................................................................................................... v Table of Contents.............................................................................................................. vii Prior Publications............................................................................................................. xiv List of Figures................................................................................................................... xv List of Tables .................................................................................................................. xvii List of Abbreviations .....................................................................................................xviii CHAPTER 1: Introduction.............................................................................................. 1 1.1 The Cholesterol Molecule......................................................................................... 1 1.1.1 Structure of Cholesterol ..................................................................................... 2 1.1.2 Biosynthesis of Cholesterol ............................................................................... 2 1.1.3 Regulation of Cholesterol Biosynthesis............................................................. 4 1.1.4 Endogenously Synthesized Derivatives of Cholesterol ..................................... 6 1.2 Introduction to Cholesterol Absorption .................................................................... 9 1.2.1 A Brief History of Cholesterol Absorption........................................................ 9 1.2.2 Cholesterol Absorption and Transport and the Enterohepatic Circulation of Bile Acids.................................................................................................................. 10 1.2.3 Phases and Molecular Mechanisms of Intestinal Cholesterol Absorption....... 13 1.2.3.1 Intraluminal Phase .................................................................................... 13 1.2.3.2 Transmembrane Phase (Uptake and Efflux)............................................. 15 vii 1.2.3.3 Intracellular Phase..................................................................................... 17 1.2.4 Nuclear Receptor Regulation of Cholesterol Absorption ................................ 20 1.2.4.1 Classification of Nuclear Hormone Receptors ......................................... 20 1.2.4.2 Nuclear Receptors Important in Cholesterol Absorption.......................... 21 Liver X Receptors (LXRs)................................................................................ 21 Farnesoid X Receptor (FXR)............................................................................ 24 Peroxisome Proliferator-activated Receptors (PPARs) .................................... 25 1.2.5 Candidates for the Intestinal Cholesterol Transporter ..................................... 26 1.2.5.1 Evidence for an Intestinal Cholesterol Permease...................................... 26 1.2.5.2 Cholesterol Effluxers ................................................................................ 29 ATP-binding cassette transporter A1 (ABCA1)............................................... 30 ATP-binding cassette transporters G5 and G8 (ABCG5/8).............................. 31 1.2.5.3 Cholesterol Importers................................................................................ 33 Scavenger receptor BI (SR-BI)......................................................................... 33 Aminopeptidase N (APN)................................................................................. 35 Caveolin 1 (CAV1) and Annexin 2 (ANXA2) Complex.................................. 36 Niemann-Pick C1 Like 1 (NPC1L1)................................................................. 37 1.3 Rationale ................................................................................................................. 45 CHAPTER 2: Caveolin-1 is not Required for Murine Intestinal Cholesterol Transport......................................................................................................................... 46 2.1 Abstract................................................................................................................... 46 2.2 Introduction............................................................................................................. 47 2.3 Experimental Procedures ........................................................................................ 48 2.3.1 Animal studies ................................................................................................. 49 2.3.2 Plasma Lipid Analyses....................................................................................
Recommended publications
  • Upregulation of Peroxisome Proliferator-Activated Receptor-Α And
    Upregulation of peroxisome proliferator-activated receptor-α and the lipid metabolism pathway promotes carcinogenesis of ampullary cancer Chih-Yang Wang, Ying-Jui Chao, Yi-Ling Chen, Tzu-Wen Wang, Nam Nhut Phan, Hui-Ping Hsu, Yan-Shen Shan, Ming-Derg Lai 1 Supplementary Table 1. Demographics and clinical outcomes of five patients with ampullary cancer Time of Tumor Time to Age Differentia survival/ Sex Staging size Morphology Recurrence recurrence Condition (years) tion expired (cm) (months) (months) T2N0, 51 F 211 Polypoid Unknown No -- Survived 193 stage Ib T2N0, 2.41.5 58 F Mixed Good Yes 14 Expired 17 stage Ib 0.6 T3N0, 4.53.5 68 M Polypoid Good No -- Survived 162 stage IIA 1.2 T3N0, 66 M 110.8 Ulcerative Good Yes 64 Expired 227 stage IIA T3N0, 60 M 21.81 Mixed Moderate Yes 5.6 Expired 16.7 stage IIA 2 Supplementary Table 2. Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis of an ampullary cancer microarray using the Database for Annotation, Visualization and Integrated Discovery (DAVID). This table contains only pathways with p values that ranged 0.0001~0.05. KEGG Pathway p value Genes Pentose and 1.50E-04 UGT1A6, CRYL1, UGT1A8, AKR1B1, UGT2B11, UGT2A3, glucuronate UGT2B10, UGT2B7, XYLB interconversions Drug metabolism 1.63E-04 CYP3A4, XDH, UGT1A6, CYP3A5, CES2, CYP3A7, UGT1A8, NAT2, UGT2B11, DPYD, UGT2A3, UGT2B10, UGT2B7 Maturity-onset 2.43E-04 HNF1A, HNF4A, SLC2A2, PKLR, NEUROD1, HNF4G, diabetes of the PDX1, NR5A2, NKX2-2 young Starch and sucrose 6.03E-04 GBA3, UGT1A6, G6PC, UGT1A8, ENPP3, MGAM, SI, metabolism
    [Show full text]
  • Table 2. Significant
    Table 2. Significant (Q < 0.05 and |d | > 0.5) transcripts from the meta-analysis Gene Chr Mb Gene Name Affy ProbeSet cDNA_IDs d HAP/LAP d HAP/LAP d d IS Average d Ztest P values Q-value Symbol ID (study #5) 1 2 STS B2m 2 122 beta-2 microglobulin 1452428_a_at AI848245 1.75334941 4 3.2 4 3.2316485 1.07398E-09 5.69E-08 Man2b1 8 84.4 mannosidase 2, alpha B1 1416340_a_at H4049B01 3.75722111 3.87309653 2.1 1.6 2.84852656 5.32443E-07 1.58E-05 1110032A03Rik 9 50.9 RIKEN cDNA 1110032A03 gene 1417211_a_at H4035E05 4 1.66015788 4 1.7 2.82772795 2.94266E-05 0.000527 NA 9 48.5 --- 1456111_at 3.43701477 1.85785922 4 2 2.8237185 9.97969E-08 3.48E-06 Scn4b 9 45.3 Sodium channel, type IV, beta 1434008_at AI844796 3.79536664 1.63774235 3.3 2.3 2.75319499 1.48057E-08 6.21E-07 polypeptide Gadd45gip1 8 84.1 RIKEN cDNA 2310040G17 gene 1417619_at 4 3.38875643 1.4 2 2.69163229 8.84279E-06 0.0001904 BC056474 15 12.1 Mus musculus cDNA clone 1424117_at H3030A06 3.95752801 2.42838452 1.9 2.2 2.62132809 1.3344E-08 5.66E-07 MGC:67360 IMAGE:6823629, complete cds NA 4 153 guanine nucleotide binding protein, 1454696_at -3.46081884 -4 -1.3 -1.6 -2.6026947 8.58458E-05 0.0012617 beta 1 Gnb1 4 153 guanine nucleotide binding protein, 1417432_a_at H3094D02 -3.13334396 -4 -1.6 -1.7 -2.5946297 1.04542E-05 0.0002202 beta 1 Gadd45gip1 8 84.1 RAD23a homolog (S.
    [Show full text]
  • A Computational Approach for Defining a Signature of Β-Cell Golgi Stress in Diabetes Mellitus
    Page 1 of 781 Diabetes A Computational Approach for Defining a Signature of β-Cell Golgi Stress in Diabetes Mellitus Robert N. Bone1,6,7, Olufunmilola Oyebamiji2, Sayali Talware2, Sharmila Selvaraj2, Preethi Krishnan3,6, Farooq Syed1,6,7, Huanmei Wu2, Carmella Evans-Molina 1,3,4,5,6,7,8* Departments of 1Pediatrics, 3Medicine, 4Anatomy, Cell Biology & Physiology, 5Biochemistry & Molecular Biology, the 6Center for Diabetes & Metabolic Diseases, and the 7Herman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202; 2Department of BioHealth Informatics, Indiana University-Purdue University Indianapolis, Indianapolis, IN, 46202; 8Roudebush VA Medical Center, Indianapolis, IN 46202. *Corresponding Author(s): Carmella Evans-Molina, MD, PhD ([email protected]) Indiana University School of Medicine, 635 Barnhill Drive, MS 2031A, Indianapolis, IN 46202, Telephone: (317) 274-4145, Fax (317) 274-4107 Running Title: Golgi Stress Response in Diabetes Word Count: 4358 Number of Figures: 6 Keywords: Golgi apparatus stress, Islets, β cell, Type 1 diabetes, Type 2 diabetes 1 Diabetes Publish Ahead of Print, published online August 20, 2020 Diabetes Page 2 of 781 ABSTRACT The Golgi apparatus (GA) is an important site of insulin processing and granule maturation, but whether GA organelle dysfunction and GA stress are present in the diabetic β-cell has not been tested. We utilized an informatics-based approach to develop a transcriptional signature of β-cell GA stress using existing RNA sequencing and microarray datasets generated using human islets from donors with diabetes and islets where type 1(T1D) and type 2 diabetes (T2D) had been modeled ex vivo. To narrow our results to GA-specific genes, we applied a filter set of 1,030 genes accepted as GA associated.
    [Show full text]
  • Regulation of Xenobiotic and Bile Acid Metabolism by the Anti-Aging Intervention Calorie Restriction in Mice
    REGULATION OF XENOBIOTIC AND BILE ACID METABOLISM BY THE ANTI-AGING INTERVENTION CALORIE RESTRICTION IN MICE By Zidong Fu Submitted to the Graduate Degree Program in Pharmacology, Toxicology, and Therapeutics and the Graduate Faculty of the University of Kansas in partial fulfillment of the requirements for the degree of Doctor of Philosophy. Dissertation Committee ________________________________ Chairperson: Curtis Klaassen, Ph.D. ________________________________ Udayan Apte, Ph.D. ________________________________ Wen-Xing Ding, Ph.D. ________________________________ Thomas Pazdernik, Ph.D. ________________________________ Hao Zhu, Ph.D. Date Defended: 04-11-2013 The Dissertation Committee for Zidong Fu certifies that this is the approved version of the following dissertation: REGULATION OF XENOBIOTIC AND BILE ACID METABOLISM BY THE ANTI-AGING INTERVENTION CALORIE RESTRICTION IN MICE ________________________________ Chairperson: Curtis Klaassen, Ph.D. Date approved: 04-11-2013 ii ABSTRACT Calorie restriction (CR), defined as reduced calorie intake without causing malnutrition, is the best-known intervention to increase life span and slow aging-related diseases in various species. However, current knowledge on the exact mechanisms of aging and how CR exerts its anti-aging effects is still inadequate. The detoxification theory of aging proposes that the up-regulation of xenobiotic processing genes (XPGs) involved in phase-I and phase-II xenobiotic metabolism as well as transport, which renders a wide spectrum of detoxification, is a longevity mechanism. Interestingly, bile acids (BAs), the metabolites of cholesterol, have recently been connected with longevity. Thus, this dissertation aimed to determine the regulation of xenobiotic and BA metabolism by the well-known anti-aging intervention CR. First, the mRNA expression of XPGs in liver during aging was investigated.
    [Show full text]
  • Flavin-Containing Monooxygenases: Mutations, Disease and Drug Response Phillips, IR; Shephard, EA
    Flavin-containing monooxygenases: mutations, disease and drug response Phillips, IR; Shephard, EA For additional information about this publication click this link. http://qmro.qmul.ac.uk/jspui/handle/123456789/1015 Information about this research object was correct at the time of download; we occasionally make corrections to records, please therefore check the published record when citing. For more information contact [email protected] Flavin-containing monooxygenases: mutations, disease and drug response Ian R. Phillips1 and Elizabeth A. Shephard2 1School of Biological and Chemical Sciences, Queen Mary, University of London, Mile End Road, London E1 4NS, UK 2Department of Biochemistry and Molecular Biology, University College London, Gower Street, London WC1E 6BT, UK Corresponding author: Shephard, E.A. ([email protected]). and, thus, contribute to drug development. This review Flavin-containing monooxygenases (FMOs) metabolize considers the role of FMOs and their genetic variants in numerous foreign chemicals, including drugs, pesticides disease and drug response. and dietary components and, thus, mediate interactions between humans and their chemical environment. We Mechanism and structure describe the mechanism of action of FMOs and insights For catalysis FMOs require flavin adenine dinucleotide gained from the structure of yeast FMO. We then (FAD) as a prosthetic group, NADPH as a cofactor and concentrate on the three FMOs (FMOs 1, 2 and 3) that are molecular oxygen as a cosubstrate [5,6]. In contrast to most important for metabolism of foreign chemicals in CYPs FMOs accept reducing equivalents directly from humans, focusing on the role of the FMOs and their genetic NADPH and, thus, do not require accessory proteins.
    [Show full text]
  • Expand Reverse Transcriptase from Escherichia Coli: AP401 (K) Deoxynucleoside-Triphosphate:DNA Deoxynucleotidyl-Transferase (RNA Directed) E.C.2.7.7.49
    For life science research only. Not for use in diagnostic procedures. Expand Reverse Transcriptase from Escherichia coli: AP401 (k) Deoxynucleoside-triphosphate:DNA deoxynucleotidyl-transferase (RNA directed) E.C.2.7.7.49 Cat. No. 11 785 826 001 1 000 U y Version 13 Cat. No. 11 785 834 001 5 000 U Content version: March 2020 Store at Ϫ15 to Ϫ25°C Product overview General handling instructions Pack content RNA preparation For high quality eucaryotic mRNA preparations it is Vial Content necessary to minimize the activity of RNases liberated Expand Reverse • 1000 U (Cat. No. 11 785 826 001) during cell lysis by using inhibitors of RNases or meth- ods that disrupt cells and inactivate RNases simultane- Transcriptase • 5000 U (Cat. No. 11 785 834 001) ously. A good overview of the methods is given in (4) as Expand Reverse cDNA synthesis buffer (first-strand) well as in (5). Suitable reagents for the isolation of total Transcriptase 250 mM Tris-HCl, 200 mM KCl, 2) RNA/or mRNA are the mRNA Isolation Kit and TriPure Buffer, 5 × conc. 25 mM MgCl2, 2.5% Tween 20 Isolation Reagent. (v/v), pH 8.3 (25°C). Consequently, it is also important to avoid the acciden- Dithiothreitol 100 mM tal introduction of trace amounts of RNases from other (DTT) solution potential sources in the laboratory, like glassware, plasticware, contaminating solutions and contamina- Storage and The undiluted enzyme is stable at –15 to –25°C through tion of the investigators hands. stability the expiration date printed on the label. The product is shipped on dry ice.
    [Show full text]
  • For Improvement of Nucleic Acid Synthesis and Ampli
    Europäisches Patentamt *EP001088891B1* (19) European Patent Office Office européen des brevets (11) EP 1 088 891 B1 (12) EUROPEAN PATENT SPECIFICATION (45) Date of publication and mention (51) Int Cl.7: C12N 15/55, C12N 15/54, of the grant of the patent: C12N 9/22, C12N 9/12, 12.01.2005 Bulletin 2005/02 C12Q 1/68, C12P 19/34 (21) Application number: 99119268.3 (22) Date of filing: 28.09.1999 (54) Thermostable enzyme promoting the fidelity of thermostable DNA polymerases - for improvement of nucleic acid synthesis and amplification in vitro Thermostabiles Enzym welches die Genauigkeit thermostabiler DNA Polymerasen erhöht - zur Verbesserung der Nucleinsäuresynthese und in vitro Amplifikation Enzyme thermostable pour augmenter la fidélité de polymèrase d’ADN thermostable - pour l’amélioration de la synthèse des acides nucléiques et d’amplification in vitro (84) Designated Contracting States: • KLENK H-P ET AL: "The complete genome AT BE CH CY DE DK ES FI FR GB GR IE IT LI LU sequence of the hyperthermophilic, MC NL PT SE sulphate-reducing archaeon Archaeoglobus fulgidus" NATURE,GB,MACMILLAN JOURNALS (43) Date of publication of application: LTD. LONDON, vol. 390, 27 November 1997 04.04.2001 Bulletin 2001/14 (1997-11-27), pages 364-370, XP002091622 ISSN: 0028-0836 (73) Proprietor: Roche Diagnostics GmbH • KALUZ S ET AL: "DIRECTIONAL CLONING OF 68298 Mannheim (DE) PCR PRODUCTS USING EXONUCLEASE III" NUCLEIC ACIDS RESEARCH,GB,OXFORD (72) Inventors: UNIVERSITY PRESS, SURREY, vol. 20, no. 16, 1 • Dr.Waltraud Ankenbauer January 1992 (1992-01-01), pages 4369-4370, 82377 Penzberg (DE) XP002072726 ISSN: 0305-1048 • Franck Laue • BOOTH P M ET AL: "ASSEMBLY AND CLONING 82396 Paehl-Fischen (DE) OF CODING SEQUENCES FOR NEUROTROPHIC • Dr.Harald Sobek FACTORS DIRECTLY FROM GENOMIC DNA 82377 Penzberg (DE) USING POLYMERASE CHAIN REACTION AND • Michael Greif URACIL DNA GLYCOSYLASE" 83661 Lenggries (DE) GENE,NL,ELSEVIER BIOMEDICAL PRESS.
    [Show full text]
  • Supplementary Materials
    Supplementary Materials COMPARATIVE ANALYSIS OF THE TRANSCRIPTOME, PROTEOME AND miRNA PROFILE OF KUPFFER CELLS AND MONOCYTES Andrey Elchaninov1,3*, Anastasiya Lokhonina1,3, Maria Nikitina2, Polina Vishnyakova1,3, Andrey Makarov1, Irina Arutyunyan1, Anastasiya Poltavets1, Evgeniya Kananykhina2, Sergey Kovalchuk4, Evgeny Karpulevich5,6, Galina Bolshakova2, Gennady Sukhikh1, Timur Fatkhudinov2,3 1 Laboratory of Regenerative Medicine, National Medical Research Center for Obstetrics, Gynecology and Perinatology Named after Academician V.I. Kulakov of Ministry of Healthcare of Russian Federation, Moscow, Russia 2 Laboratory of Growth and Development, Scientific Research Institute of Human Morphology, Moscow, Russia 3 Histology Department, Medical Institute, Peoples' Friendship University of Russia, Moscow, Russia 4 Laboratory of Bioinformatic methods for Combinatorial Chemistry and Biology, Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences, Moscow, Russia 5 Information Systems Department, Ivannikov Institute for System Programming of the Russian Academy of Sciences, Moscow, Russia 6 Genome Engineering Laboratory, Moscow Institute of Physics and Technology, Dolgoprudny, Moscow Region, Russia Figure S1. Flow cytometry analysis of unsorted blood sample. Representative forward, side scattering and histogram are shown. The proportions of negative cells were determined in relation to the isotype controls. The percentages of positive cells are indicated. The blue curve corresponds to the isotype control. Figure S2. Flow cytometry analysis of unsorted liver stromal cells. Representative forward, side scattering and histogram are shown. The proportions of negative cells were determined in relation to the isotype controls. The percentages of positive cells are indicated. The blue curve corresponds to the isotype control. Figure S3. MiRNAs expression analysis in monocytes and Kupffer cells. Full-length of heatmaps are presented.
    [Show full text]
  • (10) Patent No.: US 8715987 B2
    US008715987B2 (12) United States Patent (10) Patent No.: US 8,715,987 B2 Johnson et al. (45) Date of Patent: May 6, 2014 (54) SOLUBILIZED PHOSPHOLIPIDS FOR WO WOO 132887 A1 5, 2001 STABILIZING NUCLECACID WO WO2O080 13885 A2 1, 2008 POLYMERASES WO WO2O08077O17 A2 6, 2008 OTHER PUBLICATIONS (75) Inventors: Donald Johnson, Brookline, MA (US); Thomas C. Evans, Jr., Topsfield, MA Manual Translation CN 101570792A, Nov. 2009.* Barnes, WM. “The fidelity of Taq polymerase catalyzing PCR is (US) improved by an N-terminal deletion”. Gene, 112(1):29-35, 1992. Cann, et al., “A heterodimeric DNA polymerase: evidence that mem (73) Assignee: New England Biolabs, Inc., Ipswich, bers of Euryarchaeota possess a distinct DNA polymerase.”. Proc. MA (US) Natl. Acad. Sci. USA,95: 14250-5, 1998. Capitani.etal, “Effect of phosphatidylcholine vesicles on the activity (*) Notice: Subject to any disclaimer, the term of this of DNA polymerase-O.", Mol and Cell Biochem 27:137-138, 1979. patent is extended or adjusted under 35 Chien, et al., “Deoxyribonucleic acid polymerase from the extreme U.S.C. 154(b) by 0 days. thermophile Thermus aquaticus”,Journal of Bacteriology, 127:1550, 1976. Diaz, et al., "Accuracy of replication in the polymerase chain reaction. (21) Appl. No.: 13/450,549 Comparison between Thermotoga maritima DNA polymerase and Thermus aquaticus DNA polymerase.”. Brazilian Journal of Medical (22) Filed: Apr. 19, 2012 and Biological Research, 31:1239, 1998. Eckert , et al. “The Fidelity of DNA Polymerases used in the (65) Prior Publication Data polymerase chain reactions'. Oxford University Press, New York, US 2012/O282669 A1 Nov.
    [Show full text]
  • No Haven for the Oppressed
    No Haven for the Oppressed NO HAVEN for the Oppressed United States Policy Toward Jewish Refugees, 1938-1945 by Saul S. Friedman YOUNGSTOWN STATE UNIVERSITY Wayne State University Press Detroit 1973 Copyright © 1973 by Wayne State University Press, Detroit, Michigan 48202. All material in this work, except as identified below, is licensed under a Creative Commons Attribution-NonCommercial 3.0 United States License. To view a copy of this license, visit https://creativecommons.org/licenses/by-nc/3.0/us/. Excerpts from Arthur Miller’s Incident at Vichy formerly copyrighted © 1964 to Penguin Publishing Group now copyrighted to Penguin Random House. All material not licensed under a Creative Commons license is all rights reserved. Permission must be obtained from the copyright owner to use this material. Published simultaneously in Canada by the Copp Clark Publishing Company 517 Wellington Street, West Toronto 2B, Canada. Library of Congress Cataloging in Publication Data Friedman, Saul S 1937– No haven for the oppressed. Originally presented as the author’s thesis, Ohio State University. Includes bibliographical references. 1. Refugees, Jewish. 2. Holocaust, Jewish (1939–1945) 3. United States— Emigration and immigration. 4. Jews in the United States—Political and social conditions. I. Title. D810.J4F75 1973 940.53’159 72-2271 ISBN 978-0-8143-4373-9 (paperback); 978-0-8143-4374-6 (ebook) Publication of this book was assisted by the American Council of Learned Societies under a grant from the Andrew W. Mellon Foundation. The publication of this volume in a freely accessible digital format has been made possible by a major grant from the National Endowment for the Humanities and the Mellon Foundation through their Humanities Open Book Program.
    [Show full text]
  • Supplementary Materials
    Supplementary materials Supplementary Table S1: MGNC compound library Ingredien Molecule Caco- Mol ID MW AlogP OB (%) BBB DL FASA- HL t Name Name 2 shengdi MOL012254 campesterol 400.8 7.63 37.58 1.34 0.98 0.7 0.21 20.2 shengdi MOL000519 coniferin 314.4 3.16 31.11 0.42 -0.2 0.3 0.27 74.6 beta- shengdi MOL000359 414.8 8.08 36.91 1.32 0.99 0.8 0.23 20.2 sitosterol pachymic shengdi MOL000289 528.9 6.54 33.63 0.1 -0.6 0.8 0 9.27 acid Poricoic acid shengdi MOL000291 484.7 5.64 30.52 -0.08 -0.9 0.8 0 8.67 B Chrysanthem shengdi MOL004492 585 8.24 38.72 0.51 -1 0.6 0.3 17.5 axanthin 20- shengdi MOL011455 Hexadecano 418.6 1.91 32.7 -0.24 -0.4 0.7 0.29 104 ylingenol huanglian MOL001454 berberine 336.4 3.45 36.86 1.24 0.57 0.8 0.19 6.57 huanglian MOL013352 Obacunone 454.6 2.68 43.29 0.01 -0.4 0.8 0.31 -13 huanglian MOL002894 berberrubine 322.4 3.2 35.74 1.07 0.17 0.7 0.24 6.46 huanglian MOL002897 epiberberine 336.4 3.45 43.09 1.17 0.4 0.8 0.19 6.1 huanglian MOL002903 (R)-Canadine 339.4 3.4 55.37 1.04 0.57 0.8 0.2 6.41 huanglian MOL002904 Berlambine 351.4 2.49 36.68 0.97 0.17 0.8 0.28 7.33 Corchorosid huanglian MOL002907 404.6 1.34 105 -0.91 -1.3 0.8 0.29 6.68 e A_qt Magnogrand huanglian MOL000622 266.4 1.18 63.71 0.02 -0.2 0.2 0.3 3.17 iolide huanglian MOL000762 Palmidin A 510.5 4.52 35.36 -0.38 -1.5 0.7 0.39 33.2 huanglian MOL000785 palmatine 352.4 3.65 64.6 1.33 0.37 0.7 0.13 2.25 huanglian MOL000098 quercetin 302.3 1.5 46.43 0.05 -0.8 0.3 0.38 14.4 huanglian MOL001458 coptisine 320.3 3.25 30.67 1.21 0.32 0.9 0.26 9.33 huanglian MOL002668 Worenine
    [Show full text]
  • Gain-Of-Function Effects of Mutant P53 Explored Using a Three
    Gain-of-Function Effects of Mutant p53 Explored Using a Three- Dimensional Culture Model of Breast Cancer William A. Freed-Pastor Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy under the Executive Committee of the Graduate School of Arts and Sciences COLUMBIA UNIVERSITY 2012 © 2011 William A. Freed-Pastor All Rights Reserved ABSTRACT Gain-of-Function Effects of Mutant p53 Explored Using a Three-Dimensional Culture Model of Breast Cancer William A. Freed-Pastor p53 is the most frequent target for mutation in human tumors and mutation at this locus is a common and early event in breast carcinogenesis. Breast tumors with mutated p53 often contain abundant levels of this mutant protein, which has been postulated to actively contribute to tumorigenesis by acquiring pro-oncogenic (“gain- of-function”) properties. To elucidate how mutant p53 might contribute to mammary carcinogenesis, we employed a three-dimensional (3D) culture model of breast cancer. When placed in a laminin-rich extracellular matrix, non-malignant mammary epithelial cells form structures highly reminiscent for many aspects of acinar structures found in vivo. On the other hand, breast cancer cells, when placed in the same environment, form highly disorganized and sometimes invasive structures. Modulation of critical oncogenic signaling pathways has been shown to phenotypically revert breast cancer cells to a more acinar-like morphology. We examined the role of mutant p53 in this context by generating stable, regulatable p53 shRNA derivatives of mammary carcinoma cell lines to deplete endogenous mutant p53. We demonstrated that, depending on the cellular context, mutant p53 depletion is sufficient to significantly reduce invasion or in some cases actually induce a phenotypic reversion to more acinar-like structures in breast cancer cells grown in 3D culture.
    [Show full text]