One Hundred and Twenty-Five Years of the Annals of Botany
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Conceptual Barriers to Progress Within Evolutionary Biology
Found Sci (2009) 14:195–216 DOI 10.1007/s10699-008-9153-8 Conceptual Barriers to Progress Within Evolutionary Biology Kevin N. Laland · John Odling-Smee · Marcus W. Feldman · Jeremy Kendal Published online: 26 November 2008 © Springer Science+Business Media B.V. 2008 Abstract In spite of its success, Neo-Darwinism is faced with major conceptual barriers to further progress, deriving directly from its metaphysical foundations. Most importantly, neo- Darwinism fails to recognize a fundamental cause of evolutionary change, “niche construc- tion”. This failure restricts the generality of evolutionary theory, and introduces inaccuracies. It also hinders the integration of evolutionary biology with neighbouring disciplines, includ- ing ecosystem ecology, developmental biology, and the human sciences. Ecology is forced to become a divided discipline, developmental biology is stubbornly difficult to reconcile with evolutionary theory, and the majority of biologists and social scientists are still unhappy with evolutionary accounts of human behaviour. The incorporation of niche construction as both a cause and a product of evolution removes these disciplinary boundaries while greatly generalizing the explanatory power of evolutionary theory. Keywords Niche construction · Evolutionary biology · Ecological inheritance · Ecosystem ecology · Developmental biology 1 Introduction On the face of it, evolutionary biology is a thriving discipline: It is built on the solid theoret- ical foundations of mathematical population biology; it has a rich and productive empirical K. N. Laland (B) School of Biology, University of St. Andrews, Bute Building, Queens Terrace, St. Andrews, Fife KY16 9TS, UK e-mail: [email protected] J. Odling-Smee Mansfield College, University of Oxford, Oxford OX1 3TF, UK M. -
Jesse D. Hollister
Ecology and Evolutionary Biology Stony Brook University [email protected] Jesse D. Hollister Education 2009 Ph.D. Biological Sciences, University of California, Irvine 2003 B.A. Biology, Sonoma State University Professional Experience Jan. 2015- Assistant Professor, Dept. of Ecology and Evolutionary Biology, Stony Brook University 2012-2014 Postdoctoral Fellow, Dept. of Ecology and Evolutionary Biology, University of Toronto. Advisors: Stephen Wright, Marc Johnson 2009-2011 Postdoctoral Fellow, Dept. of Organismic and Evolutionary Biology, Harvard University. Advisor: Kirsten Bomblies Publications 13. Hollister, J.D. 2014. Polyploidy: adaptation to the genomic environment. New Phytologist. DOI: 10.1111/nph.12942 12. Hough, J., J.D. Hollister, W. Wang, S.C.H. Barrett, and S.I Wright. 2014. Genetic degeneration of old and young Y chromosomes in the flowering plant Rumex hastatulus. PNAS. 111(21): 7713-7718. 11. Hollister, J.D. 2014. Genomic variation in Arabidopsis: tools and insights from next generation sequencing. Chromosome Research. 1-13. 10. Yant, L. *, J.D. Hollister*, K. Wright, B. Arnold, J. Higgins, F. C. Franklin, and K. Bomblies. 2013. Meiotic adaptation to a genome-doubled state in Arabidopsis arenosa. Curr. Biol. 23(21): R961-63 *Co-first Authors 9. Hollister, J.D., B. Arnold, E. Svedin, K. Xue, B. Dilkes, and K. Bomblies. 2012. Genetic adaptation associated with genome doubling in autotetraploid Arabidopsis arenosa. PLoS Genet. 8(12), e1003093 8. B.C. Hunter, J. D. Hollister, and K. Bomblies. 2012. Epigenetic inheritance: what news for evolution? Curr. Biol. 22(2): R54-55. 7. Hollister, J.D., L. Smith, Y. Guo, F. Ott, D. Weigel, and B. -
Age and Area Cambjiidge University Press C
NORTH CAROLINA STATE UNIVERSITY LIBRARIES S02842957 This book is due on the date indicated unless recalled by the Libraries. Books not returned on time are subject to replacement charges. Borrowers may access their library accounts at: http://www.lib.ncsu.edu/ads/borrow.html AGE AND AREA CAMBJIIDGE UNIVERSITY PRESS C. F. CLAY, Manager LONDON : FETTER LANE, E.G. 4 LONDON : H. K. LEWIS AND CO.. Ltd., 136, Gower Street, AV.C. I LONDON: WHELDON AND WESLEY. Ltd.. 28. Essex Street, Strand. W.C. 2 NEW YORK: THE MACMILLANCO. BOMBAY \ CALCUTTA \ MACMILLAN ANDCO.. Ltd. MADRAS J TORONTO : THE MACMH,LAN CO. OF CANADA, Ltd. TOKYO : MARUZEN-KABUSHIKI-KAISHA ALL BIGHTS KESER\-ED AGE AND AREA A STUDY IN GEOGRAPHICAL DISTRIBUTION AND ORIGIN OF SPECIES BY J. C. WILLIS M.A., Sc.D., Hon. ScD. (Harvard), F.R.S. European Correspondent, late Director, Botanic Gardens, Rio de Janeiro WITH CHAPTERS BY HUGO DE VRIES, F.M.R.S. H. B. GUPPY, M.B., F.R.S. Mrs E. M. REID, B.Sc, F.L.S. JAMES SMALL, D.Sc, F.L.S. [These authors are not committed, by writing these chapters, to the support of all the doctrines here advanced] CAMBRIDGE AT THE UNIVERSITY PRESS 1922 ^ ,% ^y^h a 4 PREFACE Some thirty years ago, a pupil of the strictest school of natural selection, and enthusiastic in my belief in its principles, I set out upon a course of independent observation of nature. Ten years of such work convinced me that a simpler explanation of phenomena was always to be found, and one that seemed more in accordance with the facts; and I endeavoured—with what success this book will show—to free myself from the trammels of the natural selection theory, and to work as if I had found myself in another planet where scientific investigation was just begin- ning. -
The Reginald Farrer Collection
Catalogue of the Reginald J. Farrer Collection at the Royal Botanic Garden Edinburgh GB 235 RJF Title: The Reginald Farrer Collection Dates of Creation: 1880 – present Name of Creator: Reginald Farrer (1880-1920), Farrer family and Royal Botanic Garden Edinburgh, et al. Administrative / Biographical History: Reginald John Farrer, traveller, plant collector, plantsman and writer, was born on the 17th February, 1880 at 3 Spanish Place, London, the eldest of two boys born to James Anson Farrer (1849-1925) and Elizabeth Georgina Ann, nee Reynell-Pack. Farrer was born with a cleft palate and hare lip, the operation scars to correct this he later covered up with a thick moustache. Having to endure many childhood operations he was educated at home and also at Newnham Rectory. Spending much time by himself, Farrer enjoyed studying the flora in the hills surrounding his family’s Yorkshire estate, Ingleborough in Clapham, which his father inherited in 1889. At the age of fourteen, Farrer redesigned its alpine garden. In 1898 he attended Balliol College in Oxford, graduating in 1902. While there he helped H.J. Bidder construct the popular rock garden at St John’s College. Family holidays were often spent in Europe, but in 1903 Farrer went on his first long journey to Beijing / Peking, briefly visiting Korea before spending around 8 months in Japan. His first book, The Garden of Asia (1904) describes this stay. At this time, Farrer’s plant and gardening interests were overtaken by his ambition to become a novelist, poet and playwright. Unfortunately, most of this work was not well regarded and is now forgotten. -
Sir Arthur Hill, KCMG
No. 3760, NovEMBER 22, 1941' NATURE 619 OBITUARIES Sir Arthur Hill, K.C.M.G., F.R.S. the time of his death an entirely new revision of the HE tragic death of Sir Arthur Hill, director of genus Nototriche to be illustrated by an elaborate T the Royal Botanic Gardens, Kew, in a riding series of drawings. accident on November 3, is not only a disaster for the The appointment to Kew as assistant director Gardens, but also a great loss to the many societies, 1mder Sir David Prain we,s made in 1907. Hill was institutions and Government departments of which allotted a number of routine duties including the he was the chief representative of official botany for editorship of the Kew Bulletin, but in spite of these Great Britain. The twenty-odd years during which he was able to continue research and he published he was director saw a tremendous advance in the several taxonomic revisions and other papers. He progress of botanical science in all its branches, and took a share in the preparation of the great African it was ·natural that Kew should play a prominent part Floras published from Kew, namely "The Flora in many of the activities characteristic of this period. Capensis" and "The Flora of Tropical Africa". For Arthur William Hill was born on October ll, both of these he elaborated the difficult family 187 5, and was the only son of Daniel Hill, of Watford. Santalacere, which entailed careful dissection of small H e was educated at Marlborough and at King's and inconspicuous flowers, and for "The Flora College, Cambridge, where h e obtained a first class Capensis" he prepared (in collaboration with Pra.in) in both Part I and Part II of the Natural Sciences the article on the Gentiana.cere. -
Editorial This Issue Contains a Profile of John Stevens Henslow, Darwin’S Cambridge Friend and Mentor (Page 4)
THE LINNEAN 1 Editorial This issue contains a profile of John Stevens Henslow, Darwin’s Cambridge friend and mentor (page 4). Henslow was not only responsible for Darwin’s appointment to HMS Beagle but also arranged to receive all tlie collected material shipped home to Cambridge. Moreover at the conclusion of the voyage he arranged for Darwin to be given a Treasury grant of &I,000 towards the publication of his zoological fiiidings. During the entire five years of the Beagle s voyage, Henslow corresponded with Darwin proffering advice and guidance and later publishing some of Darwin’s geological observations in the Cambridge Philosophical Society Proceedings.’ Darwin’s great debt of gratitude to Henslow is quite apparent from the tone of his letters to his old tutor: “I always like advice from you, and no one whom I have the luck to know is more capable of giving it than yourself. Recollect, when you write, that I am a sort ofprotkgge‘of yours, and that it is your bounden duty to lecture me.” (Devonport, Dec. 3 1831) “I will say farewell, till the day arrives when I shall see my Master in Natural History and can tell him how grateful I feel for his kindness and friendship.” (Sydney, Jan. 1836) And then when telling Henslow about his geological specimens: “My dear Henslow, I do long to see you, you have been the kindest friend to me that ever man possessed.” (Shrewsbury, Oct. 6 1836) The year after the Beagle ’s return Henslow was appointed rector of Hitcham, Suffolk (1837) and from that point onwards as Darwin noted: “he cared somewhat less about science and more for his parishioners.” Finally, in the last year of his life, Henslow came to the assistance of his student one last time by acting as Chairman of the 1860 British Association meeting at which Huxley (and Hooker and Lubbock) took up the cudgel on Darwin’s behalf. -
Maura C. Flannery St
Goethe and the Molecular Aesthetic Maura C. Flannery St. John’s University I argue here that Goethe’s “delicate empiricism” is not an alternative approach to science, but an approach that scientists use consistently, though they usually do not label it as such. I further contend that Goethe’s views are relevant to today’s science, specifically to work on the structure of macromolecules such as proteins. Using the work of Agnes Arber, a botanist and philosopher of science, I will show how her writings help to relate Goethe’s work to present-day issues of cogni- tion and perception. Many observers see Goethe’s “delicate empiricism” as an antidote to reductionism and to the strict separation of the objective and subjective so prevalent in science today. The argument is that there is a different way to do science, Goethe’s way, and it can achieve discoveries which would be impossible with more positivistic approaches. While I agree that Goethe’s method of doing science can be viewed in this light, I would like to take a different approach and use the writings of the plant morphologist Agnes Arber in the process since she worked in the Goethean tradition and en- larged upon it. I argue here that Goethe’s way of science is done by many, if not most scientists, that there is not a strict dichotomy between these two ways of doing science, but rather scientists move between the two approaches so frequently and the shift is so seamless that it is difficult for them to even realize that it is happening. -
Flores Silvestres De Chile, Flores Del Norte Grande
FLORES SILVESTRES DE CHILE FLORES DEL NORTE GRANDE FLORES SILVESTRES DE CHILE FLORES DEL NORTE GRANDE FELIPE ORREGO JOHN WATSON ANA R. FLORES GLORIA ROJAS w Jack Stern y Compañía ltda. Con la cooperación del Museo Nacional de Historia Natural w Vicepresidencia de Sustentabilidad de Compañía Minera Doña Inés de Collahuasi SCM s un honor para Compañía Minera Doña Inés de Collahuasi presentar este libro, resultado de una acuciosa investigación sobre la flora de nuestras regiones I de E Tarapacá, XV de Arica y Parinacota y II de Antofagasta. Este lugar, único en el mundo, con una variedad de climas que va desde la puna y el frío extremo en el alti- plano, al calor en la pampa, llegando al templado pero árido litoral, presenta una bio- diversidad botánica que ha deslumbrado a científicos y visitantes. Parte de esta riqueza del desierto más longevo del mundo se revela en estas páginas, gracias al equipo fotográfico de expertos que encontró nuevos registros de plantas así como potenciales nuevas especies, y plantas muy difíciles de observar, en su momento de plena floración y de reproducción. La belleza de nuestro desierto es única en el mundo. Su especial y delicado sistema, que puede ser vulnerado con facilidad por la intervención del hombre y el cambio climático, requiere que lo conozcamos, comprendamos y seamos responsables de su cuidado. Solo así podremos preservarlo para las generaciones venideras. Para Collahuasi es un privilegio poder contribuir, a través de la Ley de Donaciones Culturales y de la Corporación del Patrimonio Cultural, al conocimiento y difusión de este lugar único en el planeta, un verdadero tesoro de la biodiversidad, motivo de orgullo para todos los chilenos. -
CAMBRIDGE LIBRARY COLLECTION Books of Enduring Scholarly Value
Cambridge University Press 978-1-108-01320-8 - Monocotyledons: A Morphological Study Agnes Arber Frontmatter More information CAMBRIDGE LIBRARY COLLECTION Books of enduring scholarly value Life Sciences Until the nineteenth century, the various subjects now known as the life sciences were regarded either as arcane studies which had little impact on ordinary daily life, or as a genteel hobby for the leisured classes. The increasing academic rigour and systematisation brought to the study of botany, zoology and other disciplines, and their adoption in university curricula, are reflected in the books reissued in this series. Monocotyledons Agnes Arber (1879–1960) was a prominent British botanist specialising in plant morphology, who focused her research on the monocotyledon group of flowering plants. She was the first female botanist to be elected a Fellow of the Royal Society, in 1946. This volume, first published as part of the Cambridge Botanical Handbooks series in 1925, provides an anatomical and comparative study of the monocotyledon group of plants with an analysis of the methods and objects of studying plant morphology. At the time of publication, comparative anatomy and morphology were the centre of botanical investigation; however there were differences between British and continental biologists concerning the aims of morphological study. In the introduction to this volume Arber reconciled these views by describing a distinction between pure and applied morphology, interpreting the differences in monocotyledonous species in light of this. The book contains an extensive bibliography and 160 figures. © in this web service Cambridge University Press www.cambridge.org Cambridge University Press 978-1-108-01320-8 - Monocotyledons: A Morphological Study Agnes Arber Frontmatter More information Cambridge University Press has long been a pioneer in the reissuing of out-of- print titles from its own backlist, producing digital reprints of books that are still sought after by scholars and students but could not be reprinted economically using traditional technology. -
Character Description in Phylogenetic Analysis: Insights from Agnes Arber's Concept of the Plant
Character Description in Phylogenetic Analysis: Insights from Agnes Arber's Concept of the Plant By: BRUCE K. KIRCHOFF Kirchoff, B. K. 2001. Character description in phylogenetic analysis: insights from Agnes Arber's concept of the plant. Annals of Botany 88: 1203-1214. Made available courtesy of Oxford University Press: http://aob.oxfordjournals.org/cgi/reprint/88/6/1203 ***Note: Figures may be missing from this format of the document Abstract: Throughout her work Agnes Arber argues for an inclusive, synthetic concept of the vascular plant as `consisting of a unification of every phase of its existence'. Her view of the leaf as a partial-shoot reflects this unification by relating the part (leaf) to the whole (shoot). According to Arber's view of the plant, the part can be fully understood only in the context of the whole. Morphological character description as it is currently practiced in systematics isin sharp contrast with this holistic view of plant structure. Systematic characters are removed from their context when they are described. This problem is greatest when characters are expressed verbally. Verbal descriptions convey little of the content of the character. A shift from verbal to visual charactersallows systematists to capture more information, including some of the context in which the character occurs. By using a photograph, the fringe on a labellum of Alpinia spp. (Zingiberaceae) can be viewed in the context of the labellum in a way that the word `fringe' cannot convey. The use of pictorial charactersalso allows reliable data storage and retrieval from databases, much as DNA sequences are currently being stored and retrieved. -
Tansley Insight Rapid Evolution in Plant–Microbe Interactions – an Evolutionary Genomics Perspective
Review Tansley insight Rapid evolution in plant–microbe interactions – an evolutionary genomics perspective Author for correspondence: Sophie de Vries1 , Eva H. Stukenbrock2,3 and Laura E. Rose1 Laura E. Rose 1 € € € Tel: +49 211 81 13406 Institute of Population Genetics, Heinrich Heine University Dusseldorf, Universitatsstraße 1 40225, Dusseldorf, Germany; Email: [email protected] 2Environmental Genomics, Max Planck Institute for Evolutionary Biology, Pl€on, Germany; 3The Botanical Institute, Christian- Received: 6 May 2019 Albrechts University of Kiel, Am Botanischen Garden 9-11 24118, Kiel, Germany Accepted: 13 January 2020 Contents Summary 1256 VI. The role of reticulate evolution 1258 I. Introduction 1256 VII. Concluding comments 1260 II. Signatures of selection 1257 Acknowledgements 1260 III. Convergent evolution 1257 References 1261 IV. Cryptic genetic variation 1258 V. Evidence of host jumps 1258 Summary New Phytologist (2020) 226: 1256–1262 Access to greater genomic resolution through new sequencing technologies is transforming the doi: 10.1111/nph.16458 field of plant pathology. As scientists embrace these new methods, some overarching patterns and observations come into focus. Evolutionary genomic studies are used to determine not only Key words: co-evolution, convergent the origins of pathogen lineages and geographic patterns of genetic diversity, but also to discern evolution, crop protection, genetic variation, how natural selection structures genetic variation across the genome. With greater and greater natural selection, phytopathogens. resolution, we can now pinpoint the targets of selection on a large scale. At multiple levels, crypsis and convergent evolution are evident. Host jumps and shifts may be more pervasive than once believed, and hybridization and horizontal gene transfer (HGT) likely play important roles in the emergence of genetic novelty. -
Using Phylogenetics to Detect Pollinatormediated Floral Evolution
New Review Phytologist Research review Using phylogenetics to detect pollinator-mediated floral evolution Author for correspondence: Stacey DeWitt Smith Stacey DeWitt Smith Department of Biology, Duke University, Durham, NC 27708, USA Tel: +1 919 684 3378 Email: [email protected] Received: 28 February 2010 Accepted: 6 April 2010 Summary New Phytologist (2010) 188: 354–363 The development of comparative phylogenetic methods has provided a powerful doi: 10.1111/j.1469-8137.2010.03292.x toolkit for addressing adaptive hypotheses, and researchers have begun to apply these methods to test the role of pollinators in floral evolution and diversification. Key words: ancestral state reconstruction, One approach is to reconstruct the history of both floral traits and pollination sys- diversification, floral evolution, phylogenetic tems to determine if floral trait change is spurred by shifts in pollinators. Looking generalized least squares, phylogenetics, across multiple shifts, it is also possible to test for significant correlations between pollination system, stochastic mapping, floral evolution and pollinators using parsimony, likelihood and Bayesian methods transition rate. for discrete characters or using statistical comparative methods for continuous characters. Evolutionary shifts in pollinators and floral traits may cause changes in diversification rates, and new methods are available for simultaneously studying character evolution and diversification rates. Relatively few studies have yet used formal comparative methods to elucidate how pollinators affect floral evolution across the phylogeny, and fruitful directions for future applications are discussed. consistent with the idea that these syndromes reflect floral Introduction adaptation (Stebbins, 1970; Fenster et al., 2004). These Comparative analysis has a long history in the study of comparative studies of floral morphology and pollination plant–pollinator interactions.