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Download (PDF) 1 Supplemental Table 1. Apple germplasm samples used in this study. Cultivar or collection Malus species Origin Selection for Cultivar or collection Malus species Origin Selection for name core collection name core collection Malus Malus A 2 SWE Ananas Reinette NLD domestica domestica Malus Malus Adam's Crab JPN ○ Ananas Rouge UK hybrid domestica Adams's Pearmain Malus sp. UK Andae 1-7 Malus sp. Aegisagwa Malus sp. Andonggisan Malus sp. Malus Malus Aizaohui CHN Angyou JPN domestica prunifolia Malus Akagi JPN Anhaeng Tare ○ domestica Malus Akane JPN Anisim Malus sp. domestica Malus Malus Akibae JPN Anna ISR domestica domestica Malus Malus Akin USA Annie Elizabeth UK domestica domestica Akita Maruba Malus Malus JPN ○ Annurca ITA Tachi domestica domestica Malus Malus Akita Tare JPN ○ Anoka USA domestica domestica Malus Malus Alfa SWE Antonovka RUS ○ domestica domestica Malus Antonovka Malus Alkmene UK RUS ○ domestica Karmen domestica Malus Antonovka Malus Almey CAN RUS ○ hybrid Shafran domestica Antonovka Malus Alome Mills Malus sp. RUS Zheltaia domestica Malus Malus Alpha 68 Aomori Maruba JPN domestica prunifolia Malus Malus Alpha 68A USA Aomori Maruba NLD domestica prunifolia Malus Malus Alpha 68B USA Aori No.1 JPN domestica domestica Malus Malus Alpinist RUS Aori No.15 JPN domestica domestica Malus Malus Alps Otome JPN ○ Aori No.3 JPN domestica domestica Malus Malus Alps Otome JPN Aori No.9 JPN domestica domestica Malus Altaiski Sweet USA Appa No. 3 Malus sp. JPN domestica Malus Malus Alton USA Arkansas Black USA domestica domestica Malus Malus Ambicious JPN Arlet USA ○ domestica domestica Malus Amelia USA Arnold Crab Malus sp. CAN domestica Malus Amere Malus sp. Aroma SWE domestica Amere de Malus Malus USA Aromat de vara USA Berthecourt(True) domestica domestica American Malus Malus Aromatic Russet UK ○ Summer Pearmain domestica domestica Ames Malus sp. USA Aromatic Russet Malus sp. Malus Malus Amur Naliv USA ○ Arthur Turner UK ○ domestica domestica 2 1 Cultivar or collection Malus species Origin Selection for Cultivar or collection Malus species Origin Selection for name core collection name core collection Malus Malus Asami 4 JPN Belle Fille prunifolia domestica Malus Belle Fleur Large Malus Ashiro 3 JPN ○ BEL toringo Mouche domestica Malus Malus Ashiro 4 JPN Bellefleur Record toringo domestica Malus Malus Ashiro 5 JPN Ben Davis USA toringo domestica Malus Malus Ashiro 7 JPN Ben Spur toringo domestica Malus Malus Ashiro 8 JPN ○ Beni JPN toringo domestica Malus Malus Athabasca Benikomaru domestica domestica Malus Malus Atlas(UZ-84) CAN Beninomai JPN sieversii domestica Malus Atrosanguiner Malus sp. JPN Bercon USA domestica Malus Malus Atwood Spur USA Berlepsch Red USA domestica domestica Malus Malus Aurora RUS BernerRosen CHE domestica domestica Malus B.9 vf RUS Berthecourt Malus sp. pumila Malus Bessemyanka Malus Baldwin USA RUS domestica Michurina domestica Malus Malus Bancroft CAN Beverly Crab domestica hybrid Malus Malus Bashkirian Beauty USA Beverly Hills USA domestica domestica Malus Malus Battleford CAN Bhrens USA domestica hybrid Malus Malus Batul Alma ROU Bisbee Spur USA domestica domestica Baumann's Malus Malus BEL Blair Most Apple Reinette domestica domestica Malus Malus Baxter CAN Blairmont USA domestica domestica Malus Malus Beatrix Blauacher USA domestica domestica Malus Malus Beautiful Arcade RUS Blaxstayman USA domestica domestica Malus Beauty of Bath ○ Blenheim Orange UK domestica Malus Malus Beauty Tsugaru Blenheim Pippin domestica domestica Malus Malus Bedford Pippin UK Blue Pearmain USA domestica domestica Bedfordshir Malus Malus UK Blushing gold USA Foundling domestica domestica Malus Malus Beforest USA Bolero UK domestica domestica Malus Malus Bel Golden FRA Boller McIntosh USA domestica domestica Malus Malus Belle De Boskoop NLD Bongli JPN domestica prunifolia Malus Belle de Jardins FRA Bonnoe Malus sp. domestica Malus Belle Des Buits FRA BrabantBellefleur Malus sp. USA domestica 1 2 Cultivar or collection Malus species Origin Selection for Cultivar or collection Malus species Origin Selection for name core collection name core collection Malus Malus Braeburn NZL CG 65 USA domestica hybrid Bramley"s Malus Malus Seedling(Bramley' UK CG 80 USA domestica pumila s Seedling) Malus Malus Brettacher DEU Champion USA domestica domestica Brigham Malus Malus USA Charden FRA Delicious domestica domestica Malus Malus Britemac USA Charlamoff USA domestica domestica Malus Malus Brown Snout USA Charles Ross UK domestica domestica Malus Brunnerling Charlotte Malus sp. UK domestica Malus Malus Brusnichoe USA Chautauqua USA domestica domestica Malus Malus Bud 9 RUS Chawaishanxingzi CHN hybrid domestica Budagovsky 57- Malus Malus RUS Chehalis USA 491 domestica domestica Malus Bugeun Malus sp. CHN Chellan Red USA domestica Malus Bugeun 1 Malus sp. CHN Cheongdo KOR domestica Malus Cheongdoguggwa Bulmer Norman FRA Malus sp. KOR domestica ng Malus Burgundy USA Cheonghongok Malus sp. KOR domestica Malus Malus Butter Ball Cherry cox DNK hybrid domestica Malus C. R. Fireside Malus sp. USA Cherry Pearmain USA domestica Malus Malus Calville Blanc Chesapeak Apple USA domestica domestica Calville De Saint- Malus Malus FRA Chestnut Crab USA sauveur domestica domestica Malus Malus Cameo USA Chicheng domestica domestica Malus Malus Cangqiang VF CHN Chinatsu ombrophila domestica Malus Malus Captain Kidd NZL Chiver's Delight UK ○ domestica domestica Malus Malus Caravel (=Portia) CAN Chouyou JPN domestica domestica Carmine Crab Malus Malus sp. Chubu 81108 HT domestica Malus Carola DEU Chuhapingguo Malus sp. CHN domestica Malus Malus Carroll USA Chukwang KOR domestica domestica Cestra Malus Malus USA Chulanka USA ○ Belferkitaika domestica domestica Malus CG 10 USA Chunhyang Malus sp. KOR hybrid Malus Malus CG 23 USA Chunseongmaeju baccata var. KOR pumila baccata Malus Malus CG 24 USA Chuxiao CHN pumila domestica Malus Malus CG 55 USA Clarke USA pumila domestica 1 3 Cultivar or collection Malus species Origin Selection for Cultivar or collection Malus species Origin Selection for name core collection name core collection Classic Red Malus Daesayeon10 Malus sp. KOR Delicious domestica Malus Coast Apple ZAF Daesayeon11 Malus sp. KOR domestica Malus Collet USA Daesayeon12 Malus sp. KOR domestica Malus Collins June USA Daesayeon13 Malus sp. KOR domestica Malus Columbia USA Daesayeon14 Malus sp. KOR hybrid Malus Malus Conrad USA Daesayeon15 pumila var. KOR domestica dulcissima Corta Red Rock Malus sp. Daesayeon16 Malus sp. KOR Malus Cortland USA Daesayeon17 Malus sp. KOR domestica Malus Court of Wick UK Daesayeon18 Malus sp. KOR domestica Malus Court Pendu Daesayeon19 Malus sp. KOR domestica Court Pendu de Malus Malus USA Daesayeon2 KOR France domestica toringo Malus Court Pendu Plat Daesayeon20 Malus sp. KOR domestica Malus Malus Court Pendu Rose Daesayeon21 KOR domestica prunifolia Malus Malus Court Royal UK ○ Daesayeon22 KOR domestica toringo Malus Malus Cowichan USA Daesayeon23 KOR hybrid prunifolia Cox's Orange Malus Malus UK Daesayeon24 KOR Pippin domestica prunifolia Cox's Orange Malus pippin Self-fortile Malus sp. Daesayeon25 KOR prunifolia clone4 Malus Malus Crandall USA Daesayeon26 KOR domestica toringo Malus Malus Crawley Beauty UK Daesayeon27 KOR domestica baccata Malus Crimson Glory Malus sp. Daesayeon28 KOR prunifolia Malus Malus Crimson King UK ○ Daesayeon29 KOR domestica toringo Malus Crimson Superb UK Daesayeon3 Malus sp. KOR domestica Malus Malus Crollon Daesayeon30 KOR domestica baccata Malus Crow Egg USA Daesayeon4 Malus sp. KOR domestica Malus Cut Malus sp. Daesayeon5 pumila var. KOR dulcissima Malus Malus Dab 325 USA Daesayeon6 KOR hybrid toringo Daedong1 Malus sp. KOR ○ Daesayeon7 Malus sp. KOR Malus Daedong2 Malus sp. KOR Daesayeon8 KOR toringo Malus Malus Daejeonhabyul KOR Daesayeon9 KOR domestica prunifolia Malus Daesayeon1 Malus sp. KOR Davey USA domestica 1 4 Cultivar or collection Malus species Origin Selection for Cultivar or collection Malus species Origin Selection for name core collection name core collection Malus Malus Dayton Doux Normandie USA domestica domestica Malus Malus De Flanders FRA Doux-AMR domestica domestica De Jaune Malus sp. FRA Doyle Malus sp. USA De Roche st Drap D'or Malus Malus sp. CAN FRA lawrence Guemene domestica De Roche st. Drap D'or Malus Malus sp. FRA Lawrence Guemene domestica Malus Dubbele Zoete Malus Delago NLD domestica Aagt domestica Malus Duchess of Malus Delbarestivale FRA RUS domestica Oldenburg domestica Malus Malus Delcon USA Dudley USA domestica domestica Malus Delicious USA ○ Dulcet (Bailey) Malus sp. domestica Malus Malus Delistein USA Dunkerton Late UK domestica domestica Malus Demir USA ○ Dutch Mignonne Malus sp. NLD hybrid Malus Malus Democrat AUS E36-7 domestica hybrid Derman Malus USA E559-1 Malus sp. Delicious(4X) domestica Derman Malus USA E559-13 Malus sp. McIntosh(4X) domestica Derman Malus Malus USA Earl CAN Winesap(4X) domestica hybrid Malus Malus Desertnoe Petrove RUS Earliblaze USA domestica domestica Malus Malus Deulhaedang KOR Early Banta USA floribunda domestica Devonshire Malus Malus UK Early Cortland USA Quarreden domestica domestica Malus Diana ○ Early Golden Malus sp. USA domestica Early Golden Malus DIR68T492 Malus sp. CHN Delicious domestica Malus DIR78T2 Malus sp. Early Harvest USA domestica Malus Malus Discovery UK Early Joe USA domestica domestica Malus DL-11-12 Malus sp. ○ Early Jonagold domestica Malus Doch Diany Malus sp. Early Red Rich USA domestica Malus Dolgo USA Early Strawberry Malus sp. USA hybrid Malus Early Strip Dorothea USA Malus
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