Black Molds and Melanized Yeasts Pathogenic to Humans
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Development and Evaluation of Rrna Targeted in Situ Probes and Phylogenetic Relationships of Freshwater Fungi
Development and evaluation of rRNA targeted in situ probes and phylogenetic relationships of freshwater fungi vorgelegt von Diplom-Biologin Christiane Baschien aus Berlin Von der Fakultät III - Prozesswissenschaften der Technischen Universität Berlin zur Erlangung des akademischen Grades Doktorin der Naturwissenschaften - Dr. rer. nat. - genehmigte Dissertation Promotionsausschuss: Vorsitzender: Prof. Dr. sc. techn. Lutz-Günter Fleischer Berichter: Prof. Dr. rer. nat. Ulrich Szewzyk Berichter: Prof. Dr. rer. nat. Felix Bärlocher Berichter: Dr. habil. Werner Manz Tag der wissenschaftlichen Aussprache: 19.05.2003 Berlin 2003 D83 Table of contents INTRODUCTION ..................................................................................................................................... 1 MATERIAL AND METHODS .................................................................................................................. 8 1. Used organisms ............................................................................................................................. 8 2. Media, culture conditions, maintenance of cultures and harvest procedure.................................. 9 2.1. Culture media........................................................................................................................... 9 2.2. Culture conditions .................................................................................................................. 10 2.3. Maintenance of cultures.........................................................................................................10 -
Microbial and Chemical Analysis of Non-Saccharomyces Yeasts from Chambourcin Hybrid Grapes for Potential Use in Winemaking
fermentation Article Microbial and Chemical Analysis of Non-Saccharomyces Yeasts from Chambourcin Hybrid Grapes for Potential Use in Winemaking Chun Tang Feng, Xue Du and Josephine Wee * Department of Food Science, The Pennsylvania State University, Rodney A. Erickson Food Science Building, State College, PA 16803, USA; [email protected] (C.T.F.); [email protected] (X.D.) * Correspondence: [email protected]; Tel.: +1-814-863-2956 Abstract: Native microorganisms present on grapes can influence final wine quality. Chambourcin is the most abundant hybrid grape grown in Pennsylvania and is more resistant to cold temperatures and fungal diseases compared to Vitis vinifera. Here, non-Saccharomyces yeasts were isolated from spontaneously fermenting Chambourcin must from three regional vineyards. Using cultured-based methods and ITS sequencing, Hanseniaspora and Pichia spp. were the most dominant genus out of 29 fungal species identified. Five strains of Hanseniaspora uvarum, H. opuntiae, Pichia kluyveri, P. kudriavzevii, and Aureobasidium pullulans were characterized for the ability to tolerate sulfite and ethanol. Hanseniaspora opuntiae PSWCC64 and P. kudriavzevii PSWCC102 can tolerate 8–10% ethanol and were able to utilize 60–80% sugars during fermentation. Laboratory scale fermentations of candidate strain into sterile Chambourcin juice allowed for analyzing compounds associated with wine flavor. Nine nonvolatile compounds were conserved in inoculated fermentations. In contrast, Hanseniaspora strains PSWCC64 and PSWCC70 were positively correlated with 2-heptanol and ionone associated to fruity and floral odor and P. kudriazevii PSWCC102 was positively correlated with a Citation: Feng, C.T.; Du, X.; Wee, J. Microbial and Chemical Analysis of group of esters and acetals associated to fruity and herbaceous aroma. -
Old Woman Creek National Estuarine Research Reserve Management Plan 2011-2016
Old Woman Creek National Estuarine Research Reserve Management Plan 2011-2016 April 1981 Revised, May 1982 2nd revision, April 1983 3rd revision, December 1999 4th revision, May 2011 Prepared for U.S. Department of Commerce Ohio Department of Natural Resources National Oceanic and Atmospheric Administration Division of Wildlife Office of Ocean and Coastal Resource Management 2045 Morse Road, Bldg. G Estuarine Reserves Division Columbus, Ohio 1305 East West Highway 43229-6693 Silver Spring, MD 20910 This management plan has been developed in accordance with NOAA regulations, including all provisions for public involvement. It is consistent with the congressional intent of Section 315 of the Coastal Zone Management Act of 1972, as amended, and the provisions of the Ohio Coastal Management Program. OWC NERR Management Plan, 2011 - 2016 Acknowledgements This management plan was prepared by the staff and Advisory Council of the Old Woman Creek National Estuarine Research Reserve (OWC NERR), in collaboration with the Ohio Department of Natural Resources-Division of Wildlife. Participants in the planning process included: Manager, Frank Lopez; Research Coordinator, Dr. David Klarer; Coastal Training Program Coordinator, Heather Elmer; Education Coordinator, Ann Keefe; Education Specialist Phoebe Van Zoest; and Office Assistant, Gloria Pasterak. Other Reserve staff including Dick Boyer and Marje Bernhardt contributed their expertise to numerous planning meetings. The Reserve is grateful for the input and recommendations provided by members of the Old Woman Creek NERR Advisory Council. The Reserve is appreciative of the review, guidance, and council of Division of Wildlife Executive Administrator Dave Scott and the mapping expertise of Keith Lott and the late Steve Barry. -
Metabolites from Nematophagous Fungi and Nematicidal Natural Products from Fungi As an Alternative for Biological Control
Appl Microbiol Biotechnol (2016) 100:3799–3812 DOI 10.1007/s00253-015-7233-6 MINI-REVIEW Metabolites from nematophagous fungi and nematicidal natural products from fungi as an alternative for biological control. Part I: metabolites from nematophagous ascomycetes Thomas Degenkolb1 & Andreas Vilcinskas1,2 Received: 4 October 2015 /Revised: 29 November 2015 /Accepted: 2 December 2015 /Published online: 29 December 2015 # The Author(s) 2015. This article is published with open access at Springerlink.com Abstract Plant-parasitic nematodes are estimated to cause Keywords Phytoparasitic nematodes . Nematicides . global annual losses of more than US$ 100 billion. The num- Oligosporon-type antibiotics . Nematophagous fungi . ber of registered nematicides has declined substantially over Secondary metabolites . Biocontrol the last 25 years due to concerns about their non-specific mechanisms of action and hence their potential toxicity and likelihood to cause environmental damage. Environmentally Introduction beneficial and inexpensive alternatives to chemicals, which do not affect vertebrates, crops, and other non-target organisms, Nematodes as economically important crop pests are therefore urgently required. Nematophagous fungi are nat- ural antagonists of nematode parasites, and these offer an eco- Among more than 26,000 known species of nematodes, 8000 physiological source of novel biocontrol strategies. In this first are parasites of vertebrates (Hugot et al. 2001), whereas 4100 section of a two-part review article, we discuss 83 nematicidal are parasites of plants, mostly soil-borne root pathogens and non-nematicidal primary and secondary metabolites (Nicol et al. 2011). Approximately 100 species in this latter found in nematophagous ascomycetes. Some of these sub- group are considered economically important phytoparasites stances exhibit nematicidal activities, namely oligosporon, of crops. -
APP202274 S67A Amendment Proposal Sept 2018.Pdf
PROPOSAL FORM AMENDMENT Proposal to amend a new organism approval under the Hazardous Substances and New Organisms Act 1996 Send by post to: Environmental Protection Authority, Private Bag 63002, Wellington 6140 OR email to: [email protected] Applicant Damien Fleetwood Key contact [email protected] www.epa.govt.nz 2 Proposal to amend a new organism approval Important This form is used to request amendment(s) to a new organism approval. This is not a formal application. The EPA is not under any statutory obligation to process this request. If you need help to complete this form, please look at our website (www.epa.govt.nz) or email us at [email protected]. This form may be made publicly available so any confidential information must be collated in a separate labelled appendix. The fee for this application can be found on our website at www.epa.govt.nz. This form was approved on 1 May 2012. May 2012 EPA0168 3 Proposal to amend a new organism approval 1. Which approval(s) do you wish to amend? APP202274 The organism that is the subject of this application is also the subject of: a. an innovative medicine application as defined in section 23A of the Medicines Act 1981. Yes ☒ No b. an innovative agricultural compound application as defined in Part 6 of the Agricultural Compounds and Veterinary Medicines Act 1997. Yes ☒ No 2. Which specific amendment(s) do you propose? Addition of following fungal species to those listed in APP202274: Aureobasidium pullulans, Fusarium verticillioides, Kluyveromyces species, Sarocladium zeae, Serendipita indica, Umbelopsis isabellina, Ustilago maydis Aureobasidium pullulans Domain: Fungi Phylum: Ascomycota Class: Dothideomycetes Order: Dothideales Family: Dothioraceae Genus: Aureobasidium Species: Aureobasidium pullulans (de Bary) G. -
Fungal Foes: Presentations of Chromoblastomycosis Post–Hurricane Ike
Close enCounters With the environment Fungal Foes: Presentations of Chromoblastomycosis Post–Hurricane Ike Catherine E. Riddel, MD; Jamie G. Surovik, MD; Susan Y. Chon, MD; Wei-Lien Wang, MD; Jeong Hee Cho-Vega, MD, PhD; Jonathan Eugene Cutlan, MD; Victor Gerardo Prieto, MD, PhD hromoblastomycosis, also known as chromo- A Gomori methenamine-silver stain was positive mycosis, is a chronic cutaneous and subcuta- for fungal organisms. He returned 2 weeks later for Cneous mycotic infection caused by a family of definitive excision of the entire lesion. Pathology of dematiaceous fungi. These species are found in the the excised tissue confirmed pigmented fungal organ- soil and on a variety of plants, flowers, and wood, isms consistent with chromoblastomycosis with clear primarily in tropical and subtropical regions. Infec- surgical margins. The patient had no evidence of tion typically results from implantation of spores into recurrence at a follow-up visit 6 months later. the subcutaneous tissue following trauma from plants, The patient resided on 10 acres of land in thorns, or wood splinters. We describe 3 patients Plantersville, Texas, a rural area approximately with chromoblastomycosis who presented to the 55 miles northeast of Houston. He reported clear- dermatology department at TheCUTIS University of Texas ing brush and downed trees from his property after MD Anderson Cancer Center in Houston in the Hurricane Ike in September 2008 with multiple months following Hurricane Ike, which occurred in episodes of trauma to the skin. He reported travel to September 2008. the Caribbean and Hawaii prior to the appearance of the lesion; however, he did not note any particular Case Reports trauma to the area of skin during those travels. -
Black Fungal Extremes
Studies in Mycology 61 (2008) Black fungal extremes Edited by G.S. de Hoog and M. Grube CBS Fungal Biodiversity Centre, Utrecht, The Netherlands An institute of the Royal Netherlands Academy of Arts and Sciences Black fungal extremes STUDIE S IN MYCOLOGY 61, 2008 Studies in Mycology The Studies in Mycology is an international journal which publishes systematic monographs of filamentous fungi and yeasts, and in rare occasions the proceedings of special meetings related to all fields of mycology, biotechnology, ecology, molecular biology, pathology and systematics. For instructions for authors see www.cbs.knaw.nl. EXECUTIVE EDITOR Prof. dr Robert A. Samson, CBS Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands. E-mail: [email protected] LAYOUT EDITOR S Manon van den Hoeven-Verweij, CBS Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands. E-mail: [email protected] Kasper Luijsterburg, CBS Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands. E-mail: [email protected] SCIENTIFIC EDITOR S Prof. dr Uwe Braun, Martin-Luther-Universität, Institut für Geobotanik und Botanischer Garten, Herbarium, Neuwerk 21, D-06099 Halle, Germany. E-mail: [email protected] Prof. dr Pedro W. Crous, CBS Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands. E-mail: [email protected] Prof. dr David M. Geiser, Department of Plant Pathology, 121 Buckhout Laboratory, Pennsylvania State University, University Park, PA, U.S.A. 16802. E-mail: [email protected] Dr Lorelei L. Norvell, Pacific Northwest Mycology Service, 6720 NW Skyline Blvd, Portland, OR, U.S.A. -
View with Observations on Aureobasidium Pullulans
OPEN ACCESS Freely available online Fungal Genomics & Biology Research Article Characterization of Aureobasidium pullulans Isolates Selected as Biocontrol Agents Against Fruit Decay Pathogens Janja Zajc1,2*, Anja Černoša 2, Alessandra Di Francesco3, Raffaello Castoria4, Filippo De Curtis4, Giuseppe 4 5 5 6 2 2 Lima , Hanene Badri , Haissam Jijakli , Antonio Ippolito , Cene GostinČar , Polona Zalar , Nina Gunde- Cimerman2, Wojciech J. Janisiewicz7 1Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia; 2Department of Biology, University of Ljubljana, Ljubljana, Slovenia; 3Department of Agricultural and Food Sciences, University of Bologna, Bologna, Italy; 4Department of Agricultural, Environmental and Food Sciences, University of Molise, Campobasso, Italy; 5Agro-Bio Tech Laboratory, Integrated and Urban Phytopathology Unit, University of Liège, Gembloux, Belgium; 6Department of Soil, Plant and Food Sciences, University of Bari Aldo Moro, Bari, Italy United States; 7Department of Agriculture, Agriculture Research Service, Appalachian Fruit Research Station, Kearneysville, USA ABSTRACT The "yeast-like" fungus, Aureobasidium pullulans, isolated from fruit and leaves exhibits strong biocontrol activity against postharvest decays on various fruit. Some strains were even developed into commercial products. We obtained 20 of these strains and investigated their characteristics related to biocontrol. Phylogenetic analyses based on internal transcribed spacer (ITS) and the D1/D2 domains of rRNA 28S gene regions confirmed that all the strains are most closely related to A. pullulans species. All strains grew at 0°C, which is very important to control decay at low storage temperature, and none grew at 37°C, which eliminates concern for human safety. Eighteen strains survived 2 hrs exposures to 50°C and two strains even survived for 24 hrs. -
Indoor Wet Cells As a Habitat for Melanized Fungi, Opportunistic
www.nature.com/scientificreports OPEN Indoor wet cells as a habitat for melanized fungi, opportunistic pathogens on humans and other Received: 23 June 2017 Accepted: 30 April 2018 vertebrates Published: xx xx xxxx Xiaofang Wang1,2, Wenying Cai1, A. H. G. Gerrits van den Ende3, Junmin Zhang1, Ting Xie4, Liyan Xi1,5, Xiqing Li1, Jiufeng Sun6 & Sybren de Hoog3,7,8,9 Indoor wet cells serve as an environmental reservoir for a wide diversity of melanized fungi. A total of 313 melanized fungi were isolated at fve locations in Guangzhou, China. Internal transcribed spacer (rDNA ITS) sequencing showed a preponderance of 27 species belonging to 10 genera; 64.22% (n = 201) were known as human opportunists in the orders Chaetothyriales and Venturiales, potentially causing cutaneous and sometimes deep infections. Knufa epidermidis was the most frequently encountered species in bathrooms (n = 26), while in kitchens Ochroconis musae (n = 14), Phialophora oxyspora (n = 12) and P. europaea (n = 10) were prevalent. Since the majority of species isolated are common agents of cutaneous infections and are rarely encountered in the natural environment, it is hypothesized that indoor facilities explain the previously enigmatic sources of infection by these organisms. Black yeast-like and other melanized fungi are frequently isolated from clinical specimens and are known as etiologic agents of a gamut of opportunistic infections, but for many species their natural habitat is unknown and hence the source and route of transmission remain enigmatic. Te majority of clinically relevant black yeast-like fungi belong to the order Chaetothyriales, while some belong to the Venturiales. Propagules are mostly hydro- philic1 and reluctantly dispersed by air, infections mostly being of traumatic origin. -
Rock-Inhabiting Fungi Studied with the Aid of the Model Black Fungus Knufia Petricola A95 and Other Related Strains
M.Sc. Corrado Nai Rock-inhabiting fungi studied with the aid of the model black fungus Knufi a petricola A95 and other related strains BAM-Dissertationsreihe • Band 119 Berlin 2014 Die vorliegende Arbeit entstand an der BAM Bundesanstalt für Materialforschung und -prüfung. Impressum Rock-inhabiting fungi studied with the aid of the model black fungus Knufi a petricola A95 and other related strains 2014 Herausgeber: BAM Bundesanstalt für Materialforschung und -prüfung Unter den Eichen 87 12205 Berlin Telefon: +49 30 8104-0 Telefax: +49 30 8112029 E-Mail: [email protected] Internet: www.bam.de Copyright © 2014 by BAM Bundesanstalt für Materialforschung und -prüfung Layout: BAM-Referat Z.8 ISSN 1613-4249 ISBN 978-3-9816380-8-0 Rock-inhabiting fungi studied with the aid of the model black fungus Knufia petricola A95 and other related strains Inaugural dissertation to obtain the academic degree Doctor rerum naturalium (Dr. rer. nat.) Submitted to the Department of Biology, Chemistry and Pharmacy of the Freie Universität Berlin by CORRADO NAI from Wallisellen (Switzerland) April 2014 First reviewer Prof. Dr. Rupert Mutzel Second reviewer Prof. Dr. Anna A. Gorbushina Day of disputation 11 July 2014 To Pia & Marco and Emilia & Oscar, without whom I would not be writing this. To Sissi, – always. Considerate la vostra semenza: Fatti non foste a viver come bruti, Ma per seguir virtute e canoscenza. Dante, Inferno XXVI, 118-120 ACKNOWLEDGMENTS ACKNOWLEDGMENTS This work was primarily conducted at the Federal Institute for Materials Research & Testing (BAM) in Berlin, Germany, in the framework of its Ph.D. Programme, between August 2010 and February 2014. -
Virulence Traits and Population Genomics of the Black Yeast Aureobasidium Melanogenum
Journal of Fungi Article Virulence Traits and Population Genomics of the Black Yeast Aureobasidium melanogenum Anja Cernošaˇ 1,†, Xiaohuan Sun 2,†, Cene Gostinˇcar 1,3,* , Chao Fang 2, Nina Gunde-Cimerman 1,‡ and Zewei Song 2,‡ 1 Department of Biology, Biotechnical Faculty, University of Ljubljana, 1000 Ljubljana, Slovenia; [email protected] (A.C.);ˇ [email protected] (N.G.-C.) 2 BGI-Shenzhen, Beishan Industrial Zone, Shenzhen 518083, China; [email protected] (X.S.); [email protected] (C.F.); [email protected] (Z.S.) 3 Lars Bolund Institute of Regenerative Medicine, BGI-Qingdao, Qingdao 266555, China * Correspondence: [email protected] or [email protected]; Tel.: +386-1-320-3392 † These authors contributed equally to this work. ‡ These authors contributed equally as senior authors. Abstract: The black yeast-like fungus Aureobasidium melanogenum is an opportunistic human pathogen frequently found indoors. Its traits, potentially linked to pathogenesis, have never been system- atically studied. Here, we examine 49 A. melanogenum strains for growth at 37 ◦C, siderophore production, hemolytic activity, and assimilation of hydrocarbons and human neurotransmitters and report within-species variability. All but one strain grew at 37 ◦C. All strains produced siderophores and showed some hemolytic activity. The largest differences between strains were observed in the assimilation of hydrocarbons and human neurotransmitters. We show for the first time that fungi from the order Dothideales can assimilate aromatic hydrocarbons. To explain the background, we Citation: ˇ Cernoša, A.; Sun, X.; sequenced the genomes of all 49 strains and identified genes putatively involved in siderophore pro- Gostinˇcar, C.; Fang, C.; duction and hemolysis. -
Pyrenochaeta Terrestris) and Its Identification in Gezira State
International Journal of Scientific and Research Publications, Volume 8, Issue 11, November 2018 697 ISSN 2250-3153 Survey for pink Root Rot of Onion (Pyrenochaeta terrestris) and its identification In Gezira State Abd Alsamia Osman Babiker1*, Ekhlass Hussein Mohamed2, Nayla E. Haroun3 , Mawahib Ahmed ELsiddig 2 , Abdelganee Ismail Omer4 1Part of a M.Sc. thesis of the first author, College of Agriculture Studies, Sudan University of Science and Technology, Shambat, Khartoum State, Sudan 2Department, plant protection, College of Agriculture Studies, Sudan University of Science and Technology, Shambat, Khartoum State, Sudan 3University of Hafr Albatin, the university college in Al- khafji, Department of Biology, Kingdom of Saudi Arabia 4Agriculture Research Corporation, Genana station, Sudan *Corresponding author DOI: 10.29322/IJSRP.8.11.2018.p8377 http://dx.doi.org/10.29322/IJSRP.8.11.2018.p8377 Abstract: This survey was conducted in Gezira State to detect the pink root rot disease of onion, caused by Pyrenochaeta terrestris in Gezira State. The study evolved the isolation, identification of the causal agent of determination of the level of the disease incidence. Three locations within Gezira State were selected namely the vicinity of Almusallamih Tayiba, Wad Al ataya and Hamdalnil and located at North, central and south of the State respectively. The results showed that the local variety was found to be highly susceptible to the disease than the exported of the hybrid ones. The highest disease incidence was recorded in Hamdalnil (16.8%) while the lowest disease incidence was recorded at Wad Al ataya(9.23%). Koch’s postulates were performed to prove that the fungus isolated Pyrenochaeta terrestris was the causal agent of the pink root rot on onion plants.