Allometry and Size in Ontogeny and Phylogeny
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The Paradox of Genius Recognition That, Although Nature Surely
BOOK REVIEWS recognition that, although nature surely embodies factual truth accessible to The paradox of genius human investigation (radical historians Stephen Jay Gould might even demur at this evident and necessary proposition), science does not and cannot 'progress' by rising above Darwin. By Adrian Desmond and James Moore. Michael Joseph: 1991. Pp. 808. social embeddedness on wings of a time £20. To be published in the United States by Warner Books later this year. less and international 'scientific method'. Science, like all human intellectual activ THE botanist J. D. Hooker, Charles kept throughout his life, especially as a ity, must proceed in a complex social, Darwin's closest friend and confidant, young man setting out to reform the political and psychological context: contributed a short preface to the great entire intellectual world. (These docu greatness must therefore be grasped as 1909 Cambridge Festschrift commemor ments had always been there, but were fruitful use, not as transcendence. ating both the fiftieth anniversary of the ignored and therefore unknown and in Darwin, so often depicted as a posi Origin of Species and the hundredth of visible.) I have lived ever since in the tivist hero, self-exiled at Downe in Kent Darwin's birth. Hooker, at the age of 92, penumbra of this industry as a practising amidst his plants and pigeons, emerges recalled his pleasure in Dar- win's trust and cited the volume of correspondence H.M.S. BEAGLE that he had received from MIDDLE SECTION FORE AND AFT Darwin alone: "upwards of a thousand pages of foolscap, each page containing, on an average, three hundred words." Darwin lived on that pre cious nineteenth-century crux of maximal information for historians - close enough to the present to permit pre r. -
Functional Analysis of the Homeobox Gene Tur-2 During Mouse Embryogenesis
Functional Analysis of The Homeobox Gene Tur-2 During Mouse Embryogenesis Shao Jun Tang A thesis submitted in conformity with the requirements for the Degree of Doctor of Philosophy Graduate Department of Molecular and Medical Genetics University of Toronto March, 1998 Copyright by Shao Jun Tang (1998) National Library Bibriothèque nationale du Canada Acquisitions and Acquisitions et Bibiiographic Services seMces bibliographiques 395 Wellington Street 395, rue Weifington OtbawaON K1AW OttawaON KYAON4 Canada Canada The author has granted a non- L'auteur a accordé une licence non exclusive licence alIowing the exclusive permettant à la National Library of Canada to Bibliothèque nationale du Canada de reproduce, loan, distri%uteor sell reproduire, prêter' distribuer ou copies of this thesis in microform, vendre des copies de cette thèse sous paper or electronic formats. la forme de microfiche/nlm, de reproduction sur papier ou sur format électronique. The author retains ownership of the L'auteur conserve la propriété du copyright in this thesis. Neither the droit d'auteur qui protège cette thèse. thesis nor substantial extracts fkom it Ni la thèse ni des extraits substantiels may be printed or otherwise de celle-ci ne doivent être imprimés reproduced without the author's ou autrement reproduits sans son permission. autorisation. Functional Analysis of The Homeobox Gene TLr-2 During Mouse Embryogenesis Doctor of Philosophy (1998) Shao Jun Tang Graduate Department of Moiecular and Medicd Genetics University of Toronto Abstract This thesis describes the clonhg of the TLx-2 homeobox gene, the determination of its developmental expression, the characterization of its fiuiction in mouse mesodem and penpheral nervous system (PNS) developrnent, the regulation of nx-2 expression in the early mouse embryo by BMP signalling, and the modulation of the function of nX-2 protein by the 14-3-3 signalling protein during neural development. -
Chapter 1 - Introduction
EURASIAN MIDDLE AND LATE MIOCENE HOMINOID PALEOBIOGEOGRAPHY AND THE GEOGRAPHIC ORIGINS OF THE HOMININAE by Mariam C. Nargolwalla A thesis submitted in conformity with the requirements for the degree of Doctor of Philosophy Graduate Department of Anthropology University of Toronto © Copyright by M. Nargolwalla (2009) Eurasian Middle and Late Miocene Hominoid Paleobiogeography and the Geographic Origins of the Homininae Mariam C. Nargolwalla Doctor of Philosophy Department of Anthropology University of Toronto 2009 Abstract The origin and diversification of great apes and humans is among the most researched and debated series of events in the evolutionary history of the Primates. A fundamental part of understanding these events involves reconstructing paleoenvironmental and paleogeographic patterns in the Eurasian Miocene; a time period and geographic expanse rich in evidence of lineage origins and dispersals of numerous mammalian lineages, including apes. Traditionally, the geographic origin of the African ape and human lineage is considered to have occurred in Africa, however, an alternative hypothesis favouring a Eurasian origin has been proposed. This hypothesis suggests that that after an initial dispersal from Africa to Eurasia at ~17Ma and subsequent radiation from Spain to China, fossil apes disperse back to Africa at least once and found the African ape and human lineage in the late Miocene. The purpose of this study is to test the Eurasian origin hypothesis through the analysis of spatial and temporal patterns of distribution, in situ evolution, interprovincial and intercontinental dispersals of Eurasian terrestrial mammals in response to environmental factors. Using the NOW and Paleobiology databases, together with data collected through survey and excavation of middle and late Miocene vertebrate localities in Hungary and Romania, taphonomic bias and sampling completeness of Eurasian faunas are assessed. -
An Ontogenetic Switch Drives the Positive and Negative Selection of B Cells
An ontogenetic switch drives the positive and negative selection of B cells Xijin Xua, Mukta Deobagkar-Lelea, Katherine R. Bulla, Tanya L. Crockforda, Adam J. Meadb, Adam P. Cribbsc, David Simsc, Consuelo Anzilottia, and Richard J. Cornalla,1 aMedical Research Council Human Immunology Unit, Weatherall Institute of Molecular Medicine, University of Oxford, OX3 9DS Oxford, United Kingdom; bMedical Research Council Molecular Haematology Unit, Weatherall Institute of Molecular Medicine, University of Oxford, OX3 9DS Oxford, United Kingdom; and cMedical Research Council, Weatherall Institute of Molecular Medicine, Centre for Computational Biology, Weatherall Institute of Molecular Medicine, University of Oxford, OX3 9DS Oxford, United Kingdom Edited by Michael Reth, University of Freiburg, Freiburg, Germany, and approved January 6, 2020 (received for review September 3, 2019) + Developing B cells can be positively or negatively selected by self- BM HSCs increased CD5 B-1a B cell development (15), while antigens, but the mechanisms that determine these outcomes are expression of let-7b in FL pro-B cells blocked the development of incompletely understood. Here, we show that a B cell intrinsic B-1 B cells (17). These findings support the notion of hard-wired switch between positive and negative selection during ontogeny differences during ontogeny, but possibly downstream of the HSC is determined by a change from Lin28b to let-7 gene expression. commitment stage. Ectopic expression of a Lin28b transgene in murine B cells restored Several lines of evidence also suggest that B-1 B cells can un- the positive selection of autoreactive B-1 B cells by self-antigen in dergo positive selection, which is linked to their B cell receptor adult bone marrow. -
Avian Tail Ontogeny, Pygostyle Formation, and Interpretation of Juvenile Mesozoic Specimens Received: 27 March 2018 Dana J
www.nature.com/scientificreports OPEN Avian tail ontogeny, pygostyle formation, and interpretation of juvenile Mesozoic specimens Received: 27 March 2018 Dana J. Rashid1, Kevin Surya2, Luis M. Chiappe3, Nathan Carroll3, Kimball L. Garrett4, Bino Accepted: 23 May 2018 Varghese5, Alida Bailleul6,7, Jingmai K. O’Connor 7, Susan C. Chapman 8 & John R. Horner1,9 Published: xx xx xxxx The avian tail played a critical role in the evolutionary transition from long- to short-tailed birds, yet its ontogeny in extant birds has largely been ignored. This defcit has hampered eforts to efectively identify intermediate species during the Mesozoic transition to short tails. Here we show that fusion of distal vertebrae into the pygostyle structure does not occur in extant birds until near skeletal maturity, and mineralization of vertebral processes also occurs long after hatching. Evidence for post-hatching pygostyle formation is also demonstrated in two Cretaceous specimens, a juvenile enantiornithine and a subadult basal ornithuromorph. These fndings call for reinterpretations of Zhongornis haoae, a Cretaceous bird hypothesized to be an intermediate in the long- to short-tailed bird transition, and of the recently discovered coelurosaur tail embedded in amber. Zhongornis, as a juvenile, may not yet have formed a pygostyle, and the amber-embedded tail specimen is reinterpreted as possibly avian. Analyses of relative pygostyle lengths in extant and Cretaceous birds suggests the number of vertebrae incorporated into the pygostyle has varied considerably, further complicating the interpretation of potential transitional species. In addition, this analysis of avian tail development reveals the generation and loss of intervertebral discs in the pygostyle, vertebral bodies derived from diferent kinds of cartilage, and alternative modes of caudal vertebral process morphogenesis in birds. -
A General Model for the Structure, Function, And
•• A GENERAL MODEL FOR THE STRUCTURE, FUNCTION, AND ALLOMETRY OF PLANT VASCULAR SYSTEMS Geoffrey B. West', James H. Brown!, Brian J. Enquist I G. B. West, Theoretical Division, T-8, MS B285, Los Alamos National Laboratory, Los Alamos, NM 87545, USA. G. B. West, J. H. Bmwn and B. J. Enquist, The Santa Fe Institute, 1399 Hyde Par'k Road, Santa Fe, NM 87501, USA. J. H. Brown and B. J. Enquist, Department of Biology, University of New Mexico, Albuquerque, NM 87131, USA . •email: [email protected] !To whom correspondence should be addressed; email: [email protected] lemail: [email protected] 1 , Abstract Vascular plants vary over 12 orders of magnitude in body mass and exhibit complex branching. We provide an integrated explanation for anatomical and physiological scaling relationships by developing a general model for the ge ometry and hydrodynamics of resource distribution with specific reference to plant vascular network systems. The model predicts: (i) a fractal-like branching architecture with specific scaling exponents; (ii) allometric expo nents which are simple multiples of 1/4; and (iii) values of several invariant quantities. It invokes biomechanical constraints to predict the proportion of conducting to non-conducting tissue. It shows how tapering of vascular tubes· permits resistance to be independent of tube length, thereby regulating re source distribution within a plant and allowing the evolution of diverse sizes and architectures, but limiting the maximum height for trees. .. 2 ,, I. INTRODUCTION Variation in body size is a major component of biological diversity. Among all organisms, size varies by more than 21 orders ofmagnitude from 1O-13g microbes to 108g whales. -
The Tempo and Mode of Evolution Reconsidered Stephen Jay Gould
Punctuated Equilibria: The Tempo and Mode of Evolution Reconsidered Stephen Jay Gould; Niles Eldredge Paleobiology, Vol. 3, No. 2. (Spring, 1977), pp. 115-151. Stable URL: http://links.jstor.org/sici?sici=0094-8373%28197721%293%3A2%3C115%3APETTAM%3E2.0.CO%3B2-H Paleobiology is currently published by Paleontological Society. Your use of the JSTOR archive indicates your acceptance of JSTOR's Terms and Conditions of Use, available at http://www.jstor.org/about/terms.html. JSTOR's Terms and Conditions of Use provides, in part, that unless you have obtained prior permission, you may not download an entire issue of a journal or multiple copies of articles, and you may use content in the JSTOR archive only for your personal, non-commercial use. Please contact the publisher regarding any further use of this work. Publisher contact information may be obtained at http://www.jstor.org/journals/paleo.html. Each copy of any part of a JSTOR transmission must contain the same copyright notice that appears on the screen or printed page of such transmission. The JSTOR Archive is a trusted digital repository providing for long-term preservation and access to leading academic journals and scholarly literature from around the world. The Archive is supported by libraries, scholarly societies, publishers, and foundations. It is an initiative of JSTOR, a not-for-profit organization with a mission to help the scholarly community take advantage of advances in technology. For more information regarding JSTOR, please contact [email protected]. http://www.jstor.org Sun Aug 19 19:30:53 2007 Paleobiology. -
Epigenetics and the Biological Definition of Gene × Environment
Child Development, January/February 2010, Volume 81, Number 1, Pages 41–79 Epigenetics and the Biological Definition of Gene · Environment Interactions Michael J. Meaney McGill University Variations in phenotype reflect the influence of environmental conditions during development on cellular functions, including that of the genome. The recent integration of epigenetics into developmental psychobiol- ogy illustrates the processes by which environmental conditions in early life structurally alter DNA, provid- ing a physical basis for the influence of the perinatal environmental signals on phenotype over the life of the individual. This review focuses on the enduring effects of naturally occurring variations in maternal care on gene expression and phenotype to provide an example of environmentally driven plasticity at the level of the DNA, revealing the interdependence of gene and environmental in the regulation of phenotype. The nature–nurture debate is essentially a question prevention and intervention programs. In the social of the determinants of individual differences in the sciences, and particularly psychology, there has expression of specific traits among members of the generally been an understandable bias in favor of same species. The origin of the terms nature and explanations derived from the ‘‘nurture’’ perspec- nurture has been credited to Richard Mulcaster, a tive, which emphasizes the capacity for environ- British teacher who imagined these influences as mentally induced plasticity in brain structure and collaborative forces that shape child development function. Nevertheless, over recent decades there (West & King, 1987). History has conspired to per- has been a gradual, if at times reluctant acceptance vert Mulcaster’s intent, casting genetic and environ- that genomic variations contribute to individual dif- mental influences as independent agents in the ferences in brain development and function. -
Multivariate Allometry
MULTIVARIATE ALLOMETRY Christian Peter Klingenberg Department of Biological Sciences University of Alberta Edmonton, Alberta T6G 2E9, Canada ABSTRACT The subject of allometry is variation in morphometric variables or other features of organisms associated with variation in size. Such variation can be produced by several biological phenomena, and three different levels of allometry are therefore distinguished: static allometry reflects individual variation within a population and age class, ontogenetic allometry is due to growth processes, and evolutionary allomctry is thc rcsult of phylogcnctic variation among taxa. Most multivariate studies of allometry have used principal component analysis. I review the traditional technique, which can be interpreted as a least-squares fit of a straight line to the scatter of data points in a multidimensional space spanned by the morphometric variables. I also summarize some recent developments extending principal component analysis to multiple groups. "Size correction" for comparisons between groups of organisms is an important application of allometry in morphometrics. I recommend use of Bumaby's technique for "size correction" and compare it with some similar approaches. The procedures described herein are applied to a data set on geographic variation in the waterstrider Gerris costae (Insecta: Heteroptera: Gcrridac). In this cxamplc, I use the bootstrap technique to compute standard errors and perform statistical tcsts. Finally, I contrast this approach to the study ofallometry with some alternatives, such as factor analytic and geometric approaches, and briefly analyze the different notions of allometry upon which these approaches are based. INTRODUCTION Variation in sizc of organisms usually is associated with variation in shape, and most mctric charactcrs arc highly corrclatcd among one another. -
The Evolutionary Embryologist Gavin Rylands De Beer (1899–1972)
Homology and Heterochrony: The Evolutionary Embryologist Gavin Rylands de Beer (1899–1972) Ingo Brigandt Department of History and Philosophy of Science University of Pittsburgh 1017 Cathedral of Learning Pittsburgh, PA 15260 USA E-mail: [email protected] Preprint of an article published in 2006 in the Journal of Experimental Zoology (Part B: Molecular and Developmental Evolution) 306B: 317–328 www.interscience.Wiley.com GAVIN RYLANDS DE BEER (1899–1972) 2 Abstract The evolutionary embryologist Gavin Rylands de Beer can be viewed as one of the forerunners of modern evolutionary developmental biology in that he posed crucial questions and proposed relevant answers about the causal relationship between ontogeny and phylogeny. In his developmental approach to the phylogenetic phenomenon of homology, he emphasized that homology of morphological structures is to be identified neither with the sameness of the underlying developmental processes nor with the homology of the genes that are in involved in the development of the structures. De Beer’s work on developmental evolution focused on the notion of heterochrony, arguing that paedomorphosis increases morphological evolvability and is thereby an important mode of evolution that accounts for the origin of many taxa, including higher taxa. GAVIN RYLANDS DE BEER (1899–1972) 3 Gavin Rylands de Beer (Fig. 1) was born in England in 1899, but spent the first 13 years of his life in France, where his father worked as a correspondent of a telegraph company. After returning to England, he went to Harrow School, where he became interested in zoology. In 1917 he entered Magdalen College at Oxford, graduating in 1922 after a leave for serving in the British Army during World War I. -
Exaptation-A Missing Term in the Science of Form Author(S): Stephen Jay Gould and Elisabeth S
Paleontological Society Exaptation-A Missing Term in the Science of Form Author(s): Stephen Jay Gould and Elisabeth S. Vrba Reviewed work(s): Source: Paleobiology, Vol. 8, No. 1 (Winter, 1982), pp. 4-15 Published by: Paleontological Society Stable URL: http://www.jstor.org/stable/2400563 . Accessed: 27/08/2012 17:43 Your use of the JSTOR archive indicates your acceptance of the Terms & Conditions of Use, available at . http://www.jstor.org/page/info/about/policies/terms.jsp . JSTOR is a not-for-profit service that helps scholars, researchers, and students discover, use, and build upon a wide range of content in a trusted digital archive. We use information technology and tools to increase productivity and facilitate new forms of scholarship. For more information about JSTOR, please contact [email protected]. Paleontological Society is collaborating with JSTOR to digitize, preserve and extend access to Paleobiology. http://www.jstor.org Paleobiology,8(1), 1982, pp. 4-15 Exaptation-a missing term in the science of form StephenJay Gould and Elisabeth S. Vrba* Abstract.-Adaptationhas been definedand recognizedby two differentcriteria: historical genesis (fea- turesbuilt by naturalselection for their present role) and currentutility (features now enhancingfitness no matterhow theyarose). Biologistshave oftenfailed to recognizethe potentialconfusion between these differentdefinitions because we have tendedto view naturalselection as so dominantamong evolutionary mechanismsthat historical process and currentproduct become one. Yet if manyfeatures of organisms are non-adapted,but available foruseful cooptation in descendants,then an importantconcept has no name in our lexicon (and unnamed ideas generallyremain unconsidered):features that now enhance fitnessbut were not built by naturalselection for their current role. -
Darwin's Middle Road∗
Stephen Jay Gould DARWIN'S MIDDLE ROAD∗ "We began to sail up the narrow strait lamenting," narrates Odysseus. "For on the one hand lay Scylla, with twelve feet all dangling down; and six necks exceeding long, and on each a hideous head, and therein three rows of teeth set thick and close, full of black death. And on the other mighty Charybdis sucked down the salt sea water. As often as she belched it forth, like a cauldron on a great fire she would seethe up through all her troubled deeps." Odysseus managed to swerve around Charybdis, but Scylla grabbed six of his finest men and devoured them in his sight-"the most pitiful thing mine eyes have seen of all my travail in searching out the paths of the sea." False lures and dangers often come in pairs in our legends and metaphors—consider the frying pan and the fire, or the devil and the deep blue sea. Prescriptions for avoidance either emphasize a dogged steadiness—the straight and narrow of Christian evangelists—or an averaging between unpleasant alternatives—the golden mean of Aristotle. The idea1 of steering a course between undesirable extremes emerges as a central prescription for a sensible life. The nature of scientific creativity is both a perennial topic of discussion and a prime candidate for seeking a golden mean. The two extreme positions have not been directly competing for allegiance of the unwary. They have, rather, replaced each other sequentially, with one now in the ascendancy, the other eclipsed. The first—inductivism—held that great scientists are primarily great observers and patient accumulators of information.