2019 Journal Publications
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PELOPHYLAX CARALITANUS” (AMPHIBIA: ANURA)’DA DNA HASARININ ARAŞTIRILMASI Selin GÜLEÇ MEDİKAL BİYOLOJİ VE GENETİK ANABİLİM DALI YÜKSEK LİSANS TEZİ DANIŞMAN Doç
0 HİBERNASYONDA “PELOPHYLAX CARALITANUS” (AMPHIBIA: ANURA)’DA DNA HASARININ ARAŞTIRILMASI Selin GÜLEÇ MEDİKAL BİYOLOJİ VE GENETİK ANABİLİM DALI YÜKSEK LİSANS TEZİ DANIŞMAN Doç. Dr. Uğur Cengiz ERİŞMİŞ TEZ NO: 2019-002 2019 - Afyonkarahisar i TÜRKİYE CUMHURİYETİ AFYON KOCATEPE ÜNİVERSİTESİ SAĞLIK BİLİMLERİ ENSTİTÜSÜ HİBERNASYONDA “PELOPHYLAX CARALITANUS” (AMPHIBIA: ANURA)’DA DNA HASARININ ARAŞTIRILMASI Selin GÜLEÇ MEDİKAL BİYOLOJİ VE GENETİK ANABİLİM DALI YÜKSEK LİSANS TEZİ DANIŞMAN Doç. Dr. Uğur Cengiz ERİŞMİŞ Bu Tez Afyon Kocatepe Üniversitesi Bilimsel Araştırma Projeleri Komisyonu tarafından 16.SAĞ.BİL.19 proje numarası ile desteklenmiştir. Tez No: 2019-002 AFYONKARAHİSAR-2018 i KABUL ve ONAY ii ÖNSÖZ Tez konusunun belirlenmesinde, arazi çalışmalarında ve her daim destek ve yardımını hissettiğim yüksek lisans tez danışman hocam Doç.Dr. Uğur Cengiz ERİŞMİŞ’e teşekkür ederim. Yüksek lisans öğrenciliğim boyunca yardımlarını esirgemeyen Prof. Dr. Cevdet UĞUZ, Doç. Dr. Metin ERDOĞAN, Doç. Dr. Mine DOSAY AKBULUT, Doç. Dr. Sibel GÜR hocalarıma teşekkür ederim. Tüm tez çalışmam boyunca beni hiç yalnız bırakmayan sevgili Doç. Dr. Feyza ERDOĞMUŞ hocama teşekkürlerimi sunarım. Desteklerini ve yardımlarını benden sakınmayan Dr. Öğr. Üyesi Hakan TERZİ’ye, Arş. Grv. Fadimana KAYA’ya ve Öğr. Gör. Taner YOLDAŞ’a, Pınar YOLDAŞ’a çok teşekkür ederim. Arazi çalışmalarımda ve tüm deney çalışmalarımda benimle birlikte çalışan Veteriner Hekim Ahmet KARAMAN, Veteriner Hekim Tayfun DİKMEN ve Biyolog Hasan ŞAHİN’e çok teşekkür ederim. Beni her konuda daima destekleyen, bugünlere gelmemi sağlayan ve zorlu koşullarda arkamda olduğunu bildiğim sevgili güzel ailem, canım annem Selda GÜLEÇ, canım babacığım İbrahim GÜLEÇ ve biricik kardeşim Cengiz GÜLEÇ’e sonsuz teşekkürlerimi sunarım. Afyon Kocatepe Üniversitesi Bilimsel Araştırma Projeleri Koordinasyon Birimi tarafından 16.SAĞ.BİL.19 proje numarası ile desteklenmiştir. -
Effects of Emerging Infectious Diseases on Amphibians: a Review of Experimental Studies
diversity Review Effects of Emerging Infectious Diseases on Amphibians: A Review of Experimental Studies Andrew R. Blaustein 1,*, Jenny Urbina 2 ID , Paul W. Snyder 1, Emily Reynolds 2 ID , Trang Dang 1 ID , Jason T. Hoverman 3 ID , Barbara Han 4 ID , Deanna H. Olson 5 ID , Catherine Searle 6 ID and Natalie M. Hambalek 1 1 Department of Integrative Biology, Oregon State University, Corvallis, OR 97331, USA; [email protected] (P.W.S.); [email protected] (T.D.); [email protected] (N.M.H.) 2 Environmental Sciences Graduate Program, Oregon State University, Corvallis, OR 97331, USA; [email protected] (J.U.); [email protected] (E.R.) 3 Department of Forestry and Natural Resources, Purdue University, West Lafayette, IN 47907, USA; [email protected] 4 Cary Institute of Ecosystem Studies, Millbrook, New York, NY 12545, USA; [email protected] 5 US Forest Service, Pacific Northwest Research Station, Corvallis, OR 97331, USA; [email protected] 6 Department of Biological Sciences, Purdue University, West Lafayette, IN 47907, USA; [email protected] * Correspondence [email protected]; Tel.: +1-541-737-5356 Received: 25 May 2018; Accepted: 27 July 2018; Published: 4 August 2018 Abstract: Numerous factors are contributing to the loss of biodiversity. These include complex effects of multiple abiotic and biotic stressors that may drive population losses. These losses are especially illustrated by amphibians, whose populations are declining worldwide. The causes of amphibian population declines are multifaceted and context-dependent. One major factor affecting amphibian populations is emerging infectious disease. Several pathogens and their associated diseases are especially significant contributors to amphibian population declines. -
Catalogue of the Amphibians of Venezuela: Illustrated and Annotated Species List, Distribution, and Conservation 1,2César L
Mannophryne vulcano, Male carrying tadpoles. El Ávila (Parque Nacional Guairarepano), Distrito Federal. Photo: Jose Vieira. We want to dedicate this work to some outstanding individuals who encouraged us, directly or indirectly, and are no longer with us. They were colleagues and close friends, and their friendship will remain for years to come. César Molina Rodríguez (1960–2015) Erik Arrieta Márquez (1978–2008) Jose Ayarzagüena Sanz (1952–2011) Saúl Gutiérrez Eljuri (1960–2012) Juan Rivero (1923–2014) Luis Scott (1948–2011) Marco Natera Mumaw (1972–2010) Official journal website: Amphibian & Reptile Conservation amphibian-reptile-conservation.org 13(1) [Special Section]: 1–198 (e180). Catalogue of the amphibians of Venezuela: Illustrated and annotated species list, distribution, and conservation 1,2César L. Barrio-Amorós, 3,4Fernando J. M. Rojas-Runjaic, and 5J. Celsa Señaris 1Fundación AndígenA, Apartado Postal 210, Mérida, VENEZUELA 2Current address: Doc Frog Expeditions, Uvita de Osa, COSTA RICA 3Fundación La Salle de Ciencias Naturales, Museo de Historia Natural La Salle, Apartado Postal 1930, Caracas 1010-A, VENEZUELA 4Current address: Pontifícia Universidade Católica do Río Grande do Sul (PUCRS), Laboratório de Sistemática de Vertebrados, Av. Ipiranga 6681, Porto Alegre, RS 90619–900, BRAZIL 5Instituto Venezolano de Investigaciones Científicas, Altos de Pipe, apartado 20632, Caracas 1020, VENEZUELA Abstract.—Presented is an annotated checklist of the amphibians of Venezuela, current as of December 2018. The last comprehensive list (Barrio-Amorós 2009c) included a total of 333 species, while the current catalogue lists 387 species (370 anurans, 10 caecilians, and seven salamanders), including 28 species not yet described or properly identified. Fifty species and four genera are added to the previous list, 25 species are deleted, and 47 experienced nomenclatural changes. -
Review of the Systematics, Distribution, Biogeography and Natural History of Moroccan Amphibians
Zootaxa 3661 (1): 001–060 ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Monograph ZOOTAXA Copyright © 2013 Magnolia Press ISSN 1175-5334 (online edition) http://dx.doi.org/10.11646/zootaxa.3661.1.1 http://zoobank.org/urn:lsid:zoobank.org:pub:448C4455-5A22-4C99-AA04-6FAF6DAFB879 ZOOTAXA 3661 Review of the systematics, distribution, biogeography and natural history of Moroccan amphibians WOUTER BEUKEMA1,*, PHILIP DE POUS2,3,4, DAVID DONAIRE-BARROSO5, SERGÉ BOGAERTS6, JOAN GARCIA-PORTA3, DANIEL ESCORIZA7, OSCAR J. ARRIBAS8, EL HASSAN EL MOUDEN9 & SALVADOR CARRANZA3 1Cátedra Rui Nabeiro, Universidade de Évora, Casa Cordovil, Rua Dr. Joaquim Henrique da Fonseca, 7000-890 Évora, Portugal. E- mail: [email protected]. 2Faculty of Life Sciences and Engineering, Departament Producció Animal (Fauna Silvestre), Universitat de Lleida, E-125198, Lleida, Spain. E-mail: [email protected]. 3Institute of Evolutionary Biology (CSIC-UPF), Passeig Maritim de la Barceloneta 37-49, 08003 Barcelona, Spain. 4Society for the Preservation of Herpetological Diversity, Oude Molstraat 2E, 2513 BB, Den Haag, the Netherlands. 5Calle Mar Egeo 7, 11407 Jerez de la Frontera, Cadiz, Spain. E-mail: [email protected]. 6Lupinelaan 25, NL-5582CG Waalre, the Netherlands. E-mail: [email protected]. 7Institut d'Ecologia Aquàtica, Universitat de Girona, Campus Montivili 17071, Girona, Spain. E-mail: [email protected] 8Avenida Francisco Cambó 23, E-08003 Barcelona, Spain. E-Mail: [email protected] 9Cadi Ayyad University, Faculty of Sciences, Vertebrate Biodiversity and Ecology Laboratory, B.P. 2390, Marrakech 40 000, Morocco. E-mail: [email protected], [email protected]. *Corresponding author. E-mail: [email protected] Magnolia Press Auckland, New Zealand Accepted by M. -
Species Summary
Hoplobatrachus occipitalis Region: 10 Taxonomic Authority: (Gunther, 1858) Synonyms: Common Names: Crowned Bullfrog English Order: Anura Family: Ranidae Notes on taxonomy: This species is believed to consist of at least two species (Bogart and Tandy 1981), with tetraploid populations known from the islands of Lake Victoria and from Liberia. These have not yet been formally distinguished. General Information Biome Terrestrial Freshwater Marine Geographic Range of species: Habitat and Ecology Information: This species of the African savannah zone ranges from southern It lives in many habitats from dry savannahs to disturbed forest, using Mauritania to Ethiopia, south through East Africa to northern Zambia, logging roads and rivers to penetrate deep into lowland forest. It breeds southern and western Democratic Republic of Congo, Angola, and in small to medium-sized temporary waters, but not in permanent coastal Congo and Gabon. There are isolated populations in waters, since it cannot compete with fish. southwestern Libya, southeastern Western Sahara and nearby Mauritania, the Air mountains of Niger, and northern Mali [Adrar de Iforas]). Conservation Measures: Threats: It occurs in many protected areas. Human consumption is a problem locally, especially in West and Central Africa. However, it is an adaptable species, and overall it is not significantly threatened. Species population information: It is widespread and common over much of its range, with relict isolated populations in oases and wells in the Sahelian and Saharan regions. Native -
Rediscovery at the Type Locality and Detection of a New Population 1José L
Offcial journal website: Amphibian & Reptile Conservation amphibian-reptile-conservation.org 13(2) [General Section]: 126–132 (e193). Thorius narismagnus (Amphibia: Plethodontidae): rediscovery at the type locality and detection of a new population 1José L. Aguilar-López, 2,*Paulina García-Bañuelos, 3Eduardo Pineda, and 4Sean M. Rovito 1,2,3Red de Biología y Conservación de Vertebrados, Instituto de Ecología, A.C., Carretera antigua a Coatepec 351, El Haya, Xalapa, Veracruz, MEXICO 4Unidad de Genómica Avanzada (Langebio), Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional, km 9.6 Libramiento Norte Carretera Irapuato-León, Irapuato, Guanajuato CP 36824, MEXICO Abstract.—Of the 42 Critically Endangered species of plethodontid salamanders that occur in Mexico, thirteen have not been reported in more than ten years. Given the lack of reports since 1976, the minute plethodontid salamander Thorius narismagnus is widely considered as missing. However, this report describes the rediscovery of this minute salamander at the type locality (Volcán San Martín), as well as a new locality on Volcán Santa Marta, 28 km southeast of its previously known distribution, both in the Los Tuxtlas region of Veracruz, Mexico. The localities where T. narismagnus has been found are mature forests in a community reserve on Volcán San Martín and a private reserve on Volcán Santa Marta. The presence of maxillary teeth, generally absent in Thorius, are reported here in some T. narismagnus females. Two efforts which may contribute to the conservation of Thorius narismagnus are the preservation of the cloud forests where this species persists, as well as the determination of the presence and possible effect of chytrid fungus in these populations. -
The Impact of Anchored Phylogenomics and Taxon Sampling on Phylogenetic Inference in Narrow-Mouthed Frogs (Anura, Microhylidae)
Cladistics Cladistics (2015) 1–28 10.1111/cla.12118 The impact of anchored phylogenomics and taxon sampling on phylogenetic inference in narrow-mouthed frogs (Anura, Microhylidae) Pedro L.V. Pelosoa,b,*, Darrel R. Frosta, Stephen J. Richardsc, Miguel T. Rodriguesd, Stephen Donnellane, Masafumi Matsuif, Cristopher J. Raxworthya, S.D. Bijug, Emily Moriarty Lemmonh, Alan R. Lemmoni and Ward C. Wheelerj aDivision of Vertebrate Zoology (Herpetology), American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA; bRichard Gilder Graduate School, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA; cHerpetology Department, South Australian Museum, North Terrace, Adelaide, SA 5000, Australia; dDepartamento de Zoologia, Instituto de Biociencias,^ Universidade de Sao~ Paulo, Rua do Matao,~ Trav. 14, n 321, Cidade Universitaria, Caixa Postal 11461, CEP 05422-970, Sao~ Paulo, Sao~ Paulo, Brazil; eCentre for Evolutionary Biology and Biodiversity, The University of Adelaide, Adelaide, SA 5005, Australia; fGraduate School of Human and Environmental Studies, Kyoto University, Sakyo-ku, Kyoto 606-8501, Japan; gSystematics Lab, Department of Environmental Studies, University of Delhi, Delhi 110 007, India; hDepartment of Biological Science, Florida State University, Tallahassee, FL 32306, USA; iDepartment of Scientific Computing, Florida State University, Dirac Science Library, Tallahassee, FL 32306-4120, USA; jDivision of Invertebrate Zoology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA Accepted 4 February 2015 Abstract Despite considerable progress in unravelling the phylogenetic relationships of microhylid frogs, relationships among subfami- lies remain largely unstable and many genera are not demonstrably monophyletic. -
Assessing Environmental Variables Across Plethodontid Salamanders
Lauren Mellenthin1, Erica Baken1, Dr. Dean Adams1 1Iowa State University, Ames, Iowa Stereochilus marginatus Pseudotriton ruber Pseudotriton montanus Gyrinophilus subterraneus Gyrinophilus porphyriticus Gyrinophilus palleucus Gyrinophilus gulolineatus Urspelerpes brucei Eurycea tynerensis Eurycea spelaea Eurycea multiplicata Introduction Eurycea waterlooensis Eurycea rathbuni Materials & Methods Eurycea sosorum Eurycea tridentifera Eurycea pterophila Eurycea neotenes Eurycea nana Eurycea troglodytes Eurycea latitans Eurycea naufragia • Arboreality has evolved at least 5 times within Plethodontid salamanders. [1] Eurycea tonkawae Eurycea chisholmensis Climate Variables & Eurycea quadridigitata Polygons & Point Data Eurycea wallacei Eurycea lucifuga Eurycea longicauda Eurycea guttolineata MAXENT Modeling Eurycea bislineata Eurycea wilderae Eurycea cirrigera • Yet no morphological differences separate arboreal and terrestrial species. [1] Eurycea junaluska Hemidactylium scutatum Batrachoseps robustus Batrachoseps wrighti Batrachoseps campi Batrachoseps attenuatus Batrachoseps pacificus Batrachoseps major Batrachoseps luciae Batrachoseps minor Batrachoseps incognitus • There is minimal range overlap between the two microhabitat types. Batrachoseps gavilanensis Batrachoseps gabrieli Batrachoseps stebbinsi Batrachoseps relictus Batrachoseps simatus Batrachoseps nigriventris Batrachoseps gregarius Preliminary results discovered that 71% of the arboreal species distribution Batrachoseps diabolicus Batrachoseps regius Batrachoseps kawia Dendrotriton -
Amphibia: Anura: Aromobatidae:Mannophryne
Artículo original / Original article HERPETOTROPICOS 2006 Vol. 3(1):51-57 Copyright © 2007 Univ. Los Andes VARGAS GALARCE and LA MARCA - A NEW SPECIES OF COLLAREDPrinted FROG in Venezuela. All rights reserved51 ISSN 1690-7930 A NEW SPECIES OF COLLARED FROG (AMPHIBIA: ANURA: AROMOBATIDAE: MANNOPHRYNE) FROM THE ANDES OF TRUJILLO STATE, VENEZUELA JÉSSICA Y. VARGAS GALARCE1,2 AND ENRIQUE LA MARCA2,3 1 Departamento de Biología, Facultad de Ciencias, Universidad de Los Andes, Mérida, Venezuela. 2 Laboratorio de Biogeografía, Escuela de Geografía, Facultad de Ciencias Forestales y Ambientales, Universidad de Los Andes, Mérida, Venezuela. Abstract: We describe a new species of Mannophryne frog, coming from Trujillo State, in the Venezuelan Andes, which constitutes the first species of the genus described from that political unit. This new taxon is distinguished from its congeners by the following combination of characters: small size (SVL males 20.1-23.1 mm, females 23.3-27.5 mm); tympanum about ½ the horizontal length of eye; first finger almost equal, or slightly shorter than second; fingers with thick lateral fringes; tarsal fold conspicuous; foot-web formula: I1.0–0.5II1.0–1.0III1.5–0.5IV0.5–2.0V; toes with lateral flaps; short oblique pale inguinal band; collar moderately wide, solid, with small pale blotches; ventrolateral band absent. We provide data on coloration, in life and in preservative, of specimens of the type series, as well as a description of the larvae and ecological data for the species. Key words: Mannophryne, Amphibia, Anura, Venezuela, Andes, taxonomy, natural history, conservation. Resumen: J.Y. Vargas Galarce y E. -
Instituto De Biociências – Rio Claro Programa De Pós
UNIVERSIDADE ESTADUAL PAULISTA “JÚLIO DE MESQUITA FILHO” unesp INSTITUTO DE BIOCIÊNCIAS – RIO CLARO PROGRAMA DE PÓS-GRADUAÇÃO EM CIÊNCIAS BIOLÓGICAS (ZOOLOGIA) ANFÍBIOS DA SERRA DO MAR: DIVERSIDADE E BIOGEOGRAFIA LEO RAMOS MALAGOLI Tese apresentada ao Instituto de Biociências do Câmpus de Rio Claro, Universidade Estadual Paulista, como parte dos requisitos para obtenção do título de doutor em Ciências Biológicas (Zoologia). Agosto - 2018 Leo Ramos Malagoli ANFÍBIOS DA SERRA DO MAR: DIVERSIDADE E BIOGEOGRAFIA Tese apresentada ao Instituto de Biociências do Câmpus de Rio Claro, Universidade Estadual Paulista, como parte dos requisitos para obtenção do título de doutor em Ciências Biológicas (Zoologia). Orientador: Prof. Dr. Célio Fernando Baptista Haddad Co-orientador: Prof. Dr. Ricardo Jannini Sawaya Rio Claro 2018 574.9 Malagoli, Leo Ramos M236a Anfíbios da Serra do Mar : diversidade e biogeografia / Leo Ramos Malagoli. - Rio Claro, 2018 207 f. : il., figs., gráfs., tabs., fots., mapas Tese (doutorado) - Universidade Estadual Paulista, Instituto de Biociências de Rio Claro Orientador: Célio Fernando Baptista Haddad Coorientador: Ricardo Jannini Sawaya 1. Biogeografia. 2. Anuros. 3. Conservação. 4. Diversidade funcional. 5. Elementos bióticos. 6. Mata Atlântica. 7. Regionalização. I. Título. Ficha Catalográfica elaborada pela STATI - Biblioteca da UNESP Campus de Rio Claro/SP - Ana Paula Santulo C. de Medeiros / CRB 8/7336 “To do science is to search for repeated patterns, not simply to accumulate facts, and to do the science of geographical ecology is to search for patterns of plant and animal life that can be put on a map. The person best equipped to do this is the naturalist.” Geographical Ecology. Patterns in the Distribution of Species Robert H. -
Anura: Aromobatidae)
bioRxiv preprint doi: https://doi.org/10.1101/771287; this version posted September 16, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 Sexual dichromatism in the neotropical genus Mannophryne (Anura: Aromobatidae) 2 Mark S. Greener1*, Emily Hutton2, Christopher J. Pollock3, Annabeth Wilson2, Chun Yin Lam2, Mohsen 3 Nokhbatolfoghahai 2, Michael J. Jowers4, and J. Roger Downie2 4 1Department of Pathology, Bacteriology and Avian Diseases, Faculty of Veterinary Medicine, Ghent 5 University, B-9820 Merelbeke, Belgium. 6 2 School of Life Sciences, Graham Kerr Building, University of Glasgow, Glasgow G12 8QQ, UK. 7 3 School of Biology, Faculty of Biological sciences, University of Leeds, Leeds LS2 9JT, UK. 8 4 CIBIO/InBIO (Centro de Investigacao em Biodiversidade e Recursos Genticos), Universide do Porto , 9 Vairao 4485-661, Portugal. 10 *[email protected] 11 ABSTRACT 12 Recent reviews on sexual dichromatism in frogs included Mannophryne trinitatis as the only example 13 they could find of dynamic dichromatism (males turn black when calling) within the family 14 Aromobatidae and found no example of ontogenetic dichromatism in this group. We demonstrate 15 ontogenetic dichromatism in M. trinitatis by rearing post-metamorphic froglets to near maturity: the 16 throats of all individuals started as grey coloured; at around seven weeks, the throat became pale 17 yellow in some, and more strongly yellow as development proceeded; the throats of adults are grey 18 in males and variably bright yellow in females, backed by a dark collar. -
'Extinct' Frog Is Last Survivor of Its Lineage : Nature News & Comment
'Extinct' frog is last survivor of its lineage The rediscovered Hula painted frog is alive and well in Israel. Ed Yong 04 June 2013 Frank Glaw The newly renamed Latonia nigriventer, which lives in an Israeli nature reserve, may be the only surviving species in its genus. In 1996, after four decades of failed searches, the Hula painted frog became the first amphibian to be declared extinct by an international body — a portent of the crisis that now threatens the entire class. But it seems that reports of the creature’s death had been greatly exaggerated. In October 2011, a living individual was found in Israel’s Hula Nature Reserve, and a number of others have since been spotted. “I hope it will be a conservation success story,” says Sarig Gafny at the Ruppin Academic Center in Michmoret, Israel, who led a study of the rediscovered animal. “We don’t know anything about their natural history and we have to study them. The more we know, the more we can protect them.” Gafny's team has not only rediscovered the frog, but also reclassified it. It turns out that the Hula painted frog is the last survivor of an otherwise extinct genus, whose other members are known only through fossils. The work appears today in Nature Communications1. “It’s an inspiring example of the resilience of nature, if given a chance,” says Robin Moore, who works for the Amphibian Specialist Group of the the International Union for Conservation of Nature in Arlington, Virginia, and has accompanied Gafny on frog-finding trips.