"Phenochilus Tanzania"- the Star Sapphire Cichlid
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Hohonu Volume 5 (PDF)
HOHONU 2007 VOLUME 5 A JOURNAL OF ACADEMIC WRITING This publication is available in alternate format upon request. TheUniversity of Hawai‘i is an Equal Opportunity Affirmative Action Institution. VOLUME 5 Hohonu 2 0 0 7 Academic Journal University of Hawai‘i at Hilo • Hawai‘i Community College Hohonu is publication funded by University of Hawai‘i at Hilo and Hawai‘i Community College student fees. All production and printing costs are administered by: University of Hawai‘i at Hilo/Hawai‘i Community College Board of Student Publications 200 W. Kawili Street Hilo, Hawai‘i 96720-4091 Phone: (808) 933-8823 Web: www.uhh.hawaii.edu/campuscenter/bosp All rights revert to the witers upon publication. All requests for reproduction and other propositions should be directed to writers. ii d d d d d d d d d d d d d d d d d d d d d d Table of Contents 1............................ A Fish in the Hand is Worth Two on the Net: Don’t Make me Think…different, by Piper Seldon 4..............................................................................................Abortion: Murder-Or Removal of Tissue?, by Dane Inouye 9...............................An Etymology of Four English Words, with Reference to both Grimm’s Law and Verner’s Law by Piper Seldon 11................................Artifacts and Native Burial Rights: Where do We Draw the Line?, by Jacqueline Van Blarcon 14..........................................................................................Ayahuasca: Earth’s Wisdom Revealed, by Jennifer Francisco 16......................................Beak of the Fish: What Cichlid Flocks Reveal About Speciation Processes, by Holly Jessop 26................................................................................. Climatic Effects of the 1815 Eruption of Tambora, by Jacob Smith 33...........................Columnar Joints: An Examination of Features, Formation and Cooling Models, by Mary Mathis 36.................... -
Parte I 70 Genomic Organization and Comparative Chromosome Mapping
!"#$%&'& ()& Genomic organization and comparative chromosome mapping of U1 snRNA gene in cichlid fish, with emphasis in Oreochromis niloticus* D.C. Cabral-de-Mello1,*, G.T. Valente2, R.T. Nakajima2 and C. Martins2 1UNESP – Univ Estadual Paulista, Instituto de Biociências/IB, Departamento de Biologia, Rio Claro, São Paulo, Brazil 2UNESP – Univ Estadual Paulista, Instituto de Biociências/IB, Departamento de Morfologia, Botucatu, São Paulo, Brazil Short running title: Genomic organization and mapping of U1 snRNA in cichlid fish * Corresponding author: UNESP - Univ Estadual Paulista, Instituto de Biociências/IB, Departamento de Biologia, CEP 18618-000 Botucatu, SP, Brazil Phone/Fax: 55 14 38116264. e-mail: [email protected] *Cabral-de-Mello DC, Valente GT, Nakajima RT, Martins C (2012) Genomic organization and comparative chromosome mapping of the U1 snRNA gene in cichlid fish, with an emphasis in Oreochromis niloticus. Chromosome Research 20(2): 279-292. !"#$%&'& (*& Abstract To address the knowledge of genomic and chromosomal organization, and evolutionary patterns of U1 snRNA gene in cichlid fish this gene was cytogenetically mapped and comparatively analyzed in 19 species belonging to several clades of the group. Moreover, the genomic organization of U1 snRNA was analyzed using as reference the Oreochromis niloticus genome. The results indicated a high conservation of one chromosomal cluster of U1 snRNA in the African and Asian species with some level of variation mostly in the South American species. The genomic analysis of U1 revealed a distinct scenario of that observed under the cytogenetic mapping. It was observed just an enrichment of U1 gene in the linkage group (LG) 14, that do not correspond to the same chromosome that harbors the U1 cluster identified under the cytogenetic mapping. -
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CICHLIFORMES: Cichlidae (part 5) · 1 The ETYFish Project © Christopher Scharpf and Kenneth J. Lazara COMMENTS: v. 10.0 - 11 May 2021 Order CICHLIFORMES (part 5 of 8) Family CICHLIDAE Cichlids (part 5 of 7) Subfamily Pseudocrenilabrinae African Cichlids (Palaeoplex through Yssichromis) Palaeoplex Schedel, Kupriyanov, Katongo & Schliewen 2020 palaeoplex, a key concept in geoecodynamics representing the total genomic variation of a given species in a given landscape, the analysis of which theoretically allows for the reconstruction of that species’ history; since the distribution of P. palimpsest is tied to an ancient landscape (upper Congo River drainage, Zambia), the name refers to its potential to elucidate the complex landscape evolution of that region via its palaeoplex Palaeoplex palimpsest Schedel, Kupriyanov, Katongo & Schliewen 2020 named for how its palaeoplex (see genus) is like a palimpsest (a parchment manuscript page, common in medieval times that has been overwritten after layers of old handwritten letters had been scraped off, in which the old letters are often still visible), revealing how changes in its landscape and/or ecological conditions affected gene flow and left genetic signatures by overwriting the genome several times, whereas remnants of more ancient genomic signatures still persist in the background; this has led to contrasting hypotheses regarding this cichlid’s phylogenetic position Pallidochromis Turner 1994 pallidus, pale, referring to pale coloration of all specimens observed at the time; chromis, a name -
Checklist of the Cichlid Fishes of Lake Malawi (Lake Nyasa)
Checklist of the Cichlid Fishes of Lake Malawi (Lake Nyasa/Niassa) by M.K. Oliver, Ph.D. ––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––– Checklist of the Cichlid Fishes of Lake Malawi (Lake Nyasa/Niassa) by Michael K. Oliver, Ph.D. Peabody Museum of Natural History, Yale University Updated 24 June 2020 First posted June 1999 The cichlids of Lake Malawi constitute the largest vertebrate species flock and largest lacustrine fish fauna on earth. This list includes all cichlid species, and the few subspecies, that have been formally described and named. Many–several hundred–additional endemic cichlid species are known but still undescribed, and this fact must be considered in assessing the biodiversity of the lake. Recent estimates of the total size of the lake’s cichlid fauna, counting both described and known but undescribed species, range from 700–843 species (Turner et al., 2001; Snoeks, 2001; Konings, 2007) or even 1000 species (Konings 2016). Additional undescribed species are still frequently being discovered, particularly in previously unexplored isolated locations and in deep water. The entire Lake Malawi cichlid metaflock is composed of two, possibly separate, endemic assemblages, the “Hap” group and the Mbuna group. Neither has been convincingly shown to be monophyletic. Membership in one or the other, or nonendemic status, is indicated in the checklist below for each genus, as is the type species of each endemic genus. The classification and synonymies are primarily based on the Catalog of Fishes with a few deviations. All synonymized genera and species should now be listed under their senior synonym. Nearly all species are endemic to L. Malawi, in some cases extending also into the upper Shiré River including Lake Malombe and even into the middle Shiré. -
NAME Ad Konings BOOK Back to Nature Malawi 2Nd Edition $75.8 Ad Konings BOOK Tanganjika Cichlids 3Rd Edition NEW !! $174.9 Ad Ko
NAME Ad Konings BOOK Back to Nature Malawi 2nd Edition $75.8 Ad Konings BOOK Tanganjika Cichlids 3rd Edition NEW !! $174.9 Ad Konings BOOK The Cichlids of Lake Malawi National Park NEW $105.1 Ad Konings BOOK Tropheus in their natural habitat $92.3 Aristochromis christyi 12 - 13 cm $56.5 Aristochromis christyi 13 - 17 cm NICE $75.8 Aristochromis christyi 4 - 5 cm $17.9 Aristochromis christyi 7 - 8 cm $23.0 Aulonocara baenschi Benga 5 - 6 cm $19.3 Aulonocara baenschi Benga 8 - 10 cm $40.4 Aulonocara chitande Nkatha Bay yellow head 8 - 10 cm $44.6 Aulonocara ethelwynnae 7 - 10 cm RARE $40.4 Aulonocara gertrudae Nkanda 7 - 10 cm RARE $34.9 Aulonocara hansbaenschi Chiloelo 8 - 11 cm $40.4 Aulonocara hansbaenschi red flash 4 - 5 cm $17.1 Aulonocara hansbaenschi red flash 8 - 11 cm $40.9 Aulonocara hueseri 3 - 4 cm $17.5 Aulonocara hueseri 8 - 10 cm $40.4 Aulonocara jacobfreibergi Cape Maclear 8 - 10 cm $40.4 Aulonocara jacobfreibergi Otter Point 7 - 10 cm F1 ! $40.4 Aulonocara jacobfreibergi Tsano Rock 4 - 5 cm F1 ! $21.1 Aulonocara kandeensis blue orchid 6 - 7 cm $25.3 Aulonocara korneliae 6 - 7 cm $25.3 Aulonocara maleri Chipoka 8 - 10 cm $40.9 Aulonocara maleri maleri 8 - 11 cm $40.9 Aulonocara maylandi 4 - 5 cm $17.0 Aulonocara maylandi 6 - 7 cm $25.3 Aulonocara maylandi 8 - 10 cm $40.4 Aulonocara nyassae Mazinzi 3 - 5 cm F1! VERY RARE $24.8 Aulonocara rostratum 4 - 6 cm RARE $20.5 Aulonocara rostratum 7 - 9 cm RARE $34.9 Aulonocara rostratum dwarf 7 - 9 cm NEW $34.9 Aulonocara rostratum dwarf 9 - 12 cm NEW $40.4 Aulonocara saulosi 4 - 5 cm $18.4 Aulonocara spec. -
Cichlid Stock List
Cichlid Stock List African Tanyankina Cichlids Scientific Name Common/Variation Name Altolamprologus calvus Black Kasanga Altolamprologus calvus Altolamprologus compressiceps Gombe Altolamprologus compressiceps Kasanga Goldhead F1 Altolamprologus heliantus F1 Cyphotilapia frontosa Cyprichromis leptosoma Neon Cyprichromis leptosoma Utinta Bay Fluro Cyprichromis leptosoma Mboka Cyprichromis leptosoma Moba Trio Julidochromis dickfeldi Julidochromis marlieri Julidochromis ornatus Blue Fin L Julidochromis transcriptus Kalemie Julidochromis transcriptus Gombi Lamprologus brevis Lamprologus daffodil F1 Lamprologus heliantus F1 Julidochromis ornatus Yellow Zaire Julidochromis ornatus Blue Fin S Julidochromis regani Kipilli Lamprologus ocellatus Gold/Orange Lamprologus speciosus Lamprologus tretocephalus Neolamprologus cylindricus Gold Head Neolamprologus brevis Neolamprologus brevis Congo F1 Neolamprologus cylinricus Neolamprologus leleupi Neolamprologus leleupi Orange Neolamprologus sexfasciatus Neolamprologus similis Neolamprologus tretocephalus Five bar Cichlid Paracyprichromis nigripinnis Blue Neon Chinta Tropheus duboisi Tropheus moorii African Malawi Cichlids Scientific Name Common/Variation Name Astatotilapia aeneocolor Aulonocara baenschi Yellow Peacock F1 Aulonocara eureka Aulonocara handsbaenschi Aulonocara jacobfreibergi Cape macler F1 Aulonocara maulana Aulonocara maylandi Aulonocara steveni Blue Neon/Hongi F1 Aulonocara stuartgranti Aulonocara stuartgranti Ngara F1 Aulonocara sp. Marmelade Peacock Aulonocara Steveni Hongi Aulonocara -
Whole-Genome Sequences of Malawi Cichlids Reveal Multiple Radiations Interconnected by Gene Flow
ARTICLES https://doi.org/10.1038/s41559-018-0717-x Whole-genome sequences of Malawi cichlids reveal multiple radiations interconnected by gene flow Milan Malinsky 1,2,10*, Hannes Svardal 1,3,4,5,10, Alexandra M. Tyers6,9, Eric A. Miska 1,3,7, Martin J. Genner8, George F. Turner6 and Richard Durbin 1,3* The hundreds of cichlid fish species in Lake Malawi constitute the most extensive recent vertebrate adaptive radiation. Here we characterize its genomic diversity by sequencing 134 individuals covering 73 species across all major lineages. The aver- age sequence divergence between species pairs is only 0.1–0.25%. These divergence values overlap diversity within species, with 82% of heterozygosity shared between species. Phylogenetic analyses suggest that diversification initially proceeded by serial branching from a generalist Astatotilapia-like ancestor. However, no single species tree adequately represents all species relationships, with evidence for substantial gene flow at multiple times. Common signatures of selection on visual and oxygen transport genes shared by distantly related deep-water species point to both adaptive introgression and independent selec- tion. These findings enhance our understanding of genomic processes underlying rapid species diversification, and provide a platform for future genetic analysis of the Malawi radiation. he formation of every lake or island represents a fresh oppor- The species that comprise the radiation can be divided into seven tunity for colonization, proliferation and diversification of groups with differing ecology and morphology (see Supplementary Tliving forms. In some cases, the ecological opportunities pre- Note): (1) the rock-dwelling ‘mbuna’; (2) Rhamphochromis—typi- sented by underutilized habitats facilitate adaptive radiation—rapid cally midwater pelagic piscivores; (3) Diplotaxodon—typically deep- and extensive diversification of the descendants of the colonizing water pelagic zooplanktivores and piscivores; (4) deep-water and lineages1–3. -
Replicated Divergence in Cichlid Radiations Mirrors a Major
Downloaded from http://rspb.royalsocietypublishing.org/ on January 27, 2016 Replicated divergence in cichlid radiations rspb.royalsocietypublishing.org mirrors a major vertebrate innovation Matthew D. McGee1, Brant C. Faircloth2, Samuel R. Borstein3, Jimmy Zheng4, C. Darrin Hulsey5, Peter C. Wainwright1 and Michael E. Alfaro4 Research 1Department of Evolution and Ecology, University of California, Davis, CA 95616, USA 2Department of Biological Sciences and Museum of Natural Science, Louisiana State University, Baton Rouge, Cite this article: McGee MD, Faircloth BC, LA 70803, USA 3 Borstein SR, Zheng J, Darrin Hulsey C, Department of Ecology and Evolutionary Biology, University of Tennessee, Knoxville, TN 37996, USA 4Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA 90095, USA Wainwright PC, Alfaro ME. 2016 Replicated 5Department of Biology, University of Konstanz, Konstanz, Germany divergence in cichlid radiations mirrors a major vertebrate innovation. Proc. R. Soc. B Decoupling of the upper jaw bones—jaw kinesis—is a distinctive feature of the 283: 20151413. ray-finned fishes, but it is not clear how the innovation is related to the extra- http://dx.doi.org/10.1098/rspb.2015.1413 ordinary diversity of feeding behaviours and feeding ecology in this group. We address this issue in a lineage of ray-finned fishes that is well known for its ecological and functional diversity—African rift lake cichlids. We sequenced ultraconserved elements to generate a phylogenomic tree of the Received: 11 June 2015 Lake Tanganyika and Lake Malawi cichlid radiations. We filmed a diverse array of over 50 cichlid species capturing live prey and quantified the extent Accepted: 30 November 2015 of jaw kinesis in the premaxillary and maxillary bones. -
Did Hypertrophied Lips Evolve Once Or Repeatedly in Lake Malawi Cichlid Fishes? C
Darrin Hulsey et al. BMC Evolutionary Biology (2018) 18:179 https://doi.org/10.1186/s12862-018-1296-9 RESEARCH ARTICLE Open Access Phylogenomics of a putatively convergent novelty: did hypertrophied lips evolve once or repeatedly in Lake Malawi cichlid fishes? C. Darrin Hulsey1* , Jimmy Zheng2, Roi Holzman3, Michael E. Alfaro2, Melisa Olave1 and Axel Meyer1 Abstract Background: Phylogenies provide critical information about convergence during adaptive radiation. To test whether there have been multiple origins of a distinctive trophic phenotype in one of the most rapidly radiating groups known, we used ultra-conserved elements (UCEs) to examine the evolutionary affinities of Lake Malawi cichlids lineages exhibiting greatly hypertrophied lips. Results: The hypertrophied lip cichlids Cheilochromis euchilus, Eclectochromis ornatus, Placidochromis “Mbenji fatlip”, and Placidochromis milomo areallnestedwithinthenon-mbunacladeofMalawi cichlids based on both concatenated sequence and single nucleotide polymorphism (SNP) inferred phylogenies. Lichnochromis acuticeps that exhibits slightly hypertrophied lips also appears to have evolutionary affinities to this group. However, Chilotilapia rhoadesii that lacks hypertrophied lips was recovered as nested within the species Cheilochromis euchilus. Species tree reconstructions and analyses of introgression provided largely ambiguous patterns of Malawi cichlid evolution. Conclusions: Contrary to mitochondrial DNA phylogenies, bifurcating trees based on our 1024 UCE loci supported close affinities of Lake Malawi lineages with hypertrophied lips. However, incomplete lineage sorting in Malawi tends to render these inferences more tenuous. Phylogenomic analyses will continue to provide powerful inferences about whether phenotypic novelties arose once or multiple times during adaptive radiation. Keywords: Adaptive radiation, East African Rift Lakes, Fatlips, Phylogenomics Background these adaptively radiating groups exceptionally difficult Phylogenies are critical to testing convergence. -
Doctoral Thesis
Doctoral Thesis Studies on mouth brooding cichlids of Lake Malawi: genetic, ecological and morphological differences (Summary) Shaharior Hashem Department of Bioresource Science Graduate School of Biosphere Science Hiroshima University March 2020 Summary of the Dissertation In most recent couple of decades, East African cichlids have been studied as a classic example of fast vertebrate evolution and biological diversification. A big number of cichlid species have been identified from three great lakes of East Africa: Lakes Malawi, Tanganyika, and Victoria. Malawian haplochromine cichlids are endemic, suggesting that most of this diversification has taken place within the temporal and spatial boundaries set by the lake shores. Examination of the genetic structure of recently divergent populations or species is relevant to our understanding of the process of speciation in general. Species richness and their divergence in morphology and trophic adaptations make cichlids premier of rapid speciation. Hybridization between species or genera is considered to have rapidly boosted genetic variation, which may enable speciation and adaptive radiation. Haplochromines are divided into 2 large groups. One is called ‘mbuna’, living on rocky shores and feeding mainly on attached algae, and another is ‘non-mbuna’, living in sandy shores or the ‘pelagic zone’ and feeding on a variety of items. Cichlid fishes have evolved incredible morphological and behavioral diversity. Within Lake Malawi, the phenomena of hybridization and retention of ancestral polymorphism explain allele sharing across species. Egg-spots, particularly on male fins, are considered to have a vital role in the courtship and spawning behavior of haplochromines. These spots contain a transparent outer ring and a bright colored yellow, orange or reddish center. -
African Cichlid Livestock List
African Cichlid Livestock List Animal Welfare Regulations Licence Number: LN/000015406 Please Note: Livestock lists are correct at time of publishing and availability is subject to change Updated: 01-10-2021 Common Scientific Name Size Price Stock Status Tanganyika Cichlid Aurora Cichlid Maylandia aurora £7.95 each Available Black Calvus Altolamprologus calvus £12.95 each Available Cylindricus Cichlid Neolamprologus cylindricus £9.95 each Available Gold Head Compressiceps Altolamprologus compressiceps £14.95 each Available Rostratus Cichlid Fossorochromis rostratus £8.95 each Available Sardine Cichlid Cyprichromis leptosoma £13.95 each Available Sixbar Lamprologus Neolamprologus sexfasciatus £15.95 each Available Shell Dweller Cichlid Neolamprologus Multifasciatus £8.95 each Available (Multies) 1 / 4 Common Scientific Name Size Price Stock Status Tanganyika Cichlid White Spotted Tropheus Tropheus Duboisi £12.95 each Available Malawi Cichlid Assorted Malawi Assorted SP. £10.95 each Available Blue Victoria Mouthbrooder Astatotilapia Nubila £9.95 each Available Electric Blue Hap Sciaenochromis fryeri £9.95 each Available Fenesratus Cichlid Haplochromis fenestratus £9.95 each Available Freibergs Peacock Aulonocara jacobfreibergi £9.95 each Available Hongi Red Top Labidochromis sp Hongi £10.95 each Available Ice Blue Zebra Mbuna Maylandia greshakei £9.95 each Available Kingsisze Cichlid cynotilapia pulpican £9.95 each Available 2 / 4 Common Scientific Name Size Price Stock Status Tanganyika Cichlid Livingstoni Cichlid Nimbochromis livingstonii -
Unrestricted Species
UNRESTRICTED SPECIES Actinopterygii (Ray-finned Fishes) Atheriniformes (Silversides) Scientific Name Common Name Bedotia geayi Madagascar Rainbowfish Melanotaenia boesemani Boeseman's Rainbowfish Melanotaenia maylandi Maryland's Rainbowfish Melanotaenia splendida Eastern Rainbow Fish Beloniformes (Needlefishes) Scientific Name Common Name Dermogenys pusilla Wrestling Halfbeak Characiformes (Piranhas, Leporins, Piranhas) Scientific Name Common Name Abramites hypselonotus Highbacked Headstander Acestrorhynchus falcatus Red Tail Freshwater Barracuda Acestrorhynchus falcirostris Yellow Tail Freshwater Barracuda Anostomus anostomus Striped Headstander Anostomus spiloclistron False Three Spotted Anostomus Anostomus ternetzi Ternetz's Anostomus Anostomus varius Checkerboard Anostomus Astyanax mexicanus Blind Cave Tetra Boulengerella maculata Spotted Pike Characin Carnegiella strigata Marbled Hatchetfish Chalceus macrolepidotus Pink-Tailed Chalceus Charax condei Small-scaled Glass Tetra Charax gibbosus Glass Headstander Chilodus punctatus Spotted Headstander Distichodus notospilus Red-finned Distichodus Distichodus sexfasciatus Six-banded Distichodus Exodon paradoxus Bucktoothed Tetra Gasteropelecus sternicla Common Hatchetfish Gymnocorymbus ternetzi Black Skirt Tetra Hasemania nana Silver-tipped Tetra Hemigrammus erythrozonus Glowlight Tetra Hemigrammus ocellifer Head and Tail Light Tetra Hemigrammus pulcher Pretty Tetra Hemigrammus rhodostomus Rummy Nose Tetra *Except if listed on: IUCN Red List (Endangered, Critically Endangered, or Extinct