Extrolites of Aspergillus Fumigatus and Other Pathogenic Species in Aspergillus Section Fumigati

Total Page:16

File Type:pdf, Size:1020Kb

Extrolites of Aspergillus Fumigatus and Other Pathogenic Species in Aspergillus Section Fumigati Downloaded from orbit.dtu.dk on: Sep 28, 2021 Extrolites of Aspergillus fumigatus and Other Pathogenic Species in Aspergillus Section Fumigati Frisvad, Jens Christian; Larsen, Thomas Ostenfeld Published in: Frontiers in Microbiology Link to article, DOI: 10.3389/fmicb.2015.01485 Publication date: 2016 Document Version Publisher's PDF, also known as Version of record Link back to DTU Orbit Citation (APA): Frisvad, J. C., & Larsen, T. O. (2016). Extrolites of Aspergillus fumigatus and Other Pathogenic Species in Aspergillus Section Fumigati. Frontiers in Microbiology, 6, [1485]. https://doi.org/10.3389/fmicb.2015.01485 General rights Copyright and moral rights for the publications made accessible in the public portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. Users may download and print one copy of any publication from the public portal for the purpose of private study or research. You may not further distribute the material or use it for any profit-making activity or commercial gain You may freely distribute the URL identifying the publication in the public portal If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. MINI REVIEW published: 07 January 2016 doi: 10.3389/fmicb.2015.01485 Extrolites of Aspergillus fumigatus and Other Pathogenic Species in Aspergillus Section Fumigati Jens C. Frisvad * and Thomas O. Larsen Section of Eukaryotic Biotechnology, Department of Systems Biology, Technical University of Denmark, Kongens Lyngby, Denmark Aspergillus fumigatus is an important opportunistic human pathogen known for its production of a large array of extrolites. Up to 63 species have been described in Aspergillus section Fumigati, some of which have also been reliably reported to be pathogenic, including A. felis, A. fischeri, A. fumigatiaffinis, A. fumisynnematus, A. hiratsukae, A. laciniosus, A. lentulus, A. novofumigatus, A. parafelis, A. pseudofelis, A. pseudoviridinutans, A. spinosus, A. thermomutatus, and A. udagawae. These species share the production of hydrophobins, melanins, and siderophores and ability to grow ◦ Edited by: well at 37 C, but they only share some small molecule extrolites, that could be important Frederic Lamoth, factors in pathogenicity. According to the literature gliotoxin and other exometabolites Lausanne University Hospital, Switzerland can be contributing factors to pathogenicity, but these exometabolites are apparently Reviewed by: not produced by all pathogenic species. It is our hypothesis that species unable to Vito Valiante, produce some of these metabolites can produce proxy-exometabolites that may serve Leibniz-Institute for Natural Product Research and Infection Biology - Hans the same function. We tabulate all exometabolites reported from species in Aspergillus Knöll Institute, Germany section Fumigati and by comparing the profile of those extrolites, suggest that those William Charles Nierman, producing many different kinds of exometabolites are potential opportunistic pathogens. J. Craig Venter Institute, USA Miroslav Kolarik Kolarik, The exometabolite data also suggest that the profile of exometabolites are highly specific Institute of Microbiology, and can be used for identification of these closely related species. Czech Republic *Correspondence: Keywords: Aspergillus, gliotoxin, fumagillin, extrolites, proxy-exometabolites Jens C. Frisvad [email protected] INTRODUCTION Specialty section: This article was submitted to The genus Aspergillus comprises 344 species (Samson et al., 2014), and some of these can cause Fungi and Their Interactions, human diseases. A. fumigatus is the most important species (Latgé, 1999), but several other species a section of the journal in Aspergillus section Fumigati have been shown to be pathogenic in humans and animals with Frontiers in Microbiology an inefficient immune system, including A. lentulus (Balajee et al., 2005a; Alhambra et al., 2008; Received: 05 August 2015 Alcazar-Fuoli et al., 2014; Howard, 2014), A. fumisynnematus (Alcazar-Fuoli et al., 2014),. A Accepted: 09 December 2015 fumigatiaffinis (Alcazar-Fuoli et al., 2014), A. novofumigatus (Peláez et al., 2013), A. felis (Barrs Published: 07 January 2016 et al., 2013), A. fischeri (Kano et al., 2015), A. viridinutans (Vinh et al., 2009a; Coelho et al., 2011; Citation: Alcazar-Fuoli et al., 2014), A. pseudofelis, A. pseudoviridinutans, and A. parafelis (Sugui et al., 2014), Frisvad JC and Larsen TO (2016) A. thermomutatus (Toskova et al., 2013; Alcazar-Fuoli et al., 2014; Howard, 2014; Khare et al., Extrolites of Aspergillus fumigatus and Other Pathogenic Species in 2014), A. laciniosus (Malejczyk et al., 2013), A. hiratzukae (Guarro et al., 2002; Alcazar-Fuoli et al., Aspergillus Section Fumigati. 2014), A. spinosus (Sutton et al., 2002); and A. udagawae (Kano et al., 2008; Vinh et al., 2009b; Front. Microbiol. 6:1485. Sugui et al., 2010; Posteraro et al., 2011; Gyotoku et al., 2012; Kano et al., 2013). The taxonomy doi: 10.3389/fmicb.2015.01485 and identification of the causing Aspergilli is not always clear-cut and some isolates have been Frontiers in Microbiology | www.frontiersin.org 1 January 2016 | Volume 6 | Article 1485 Frisvad and Larsen Aspergillus Section Fumigati Extrolites misidentified (Balajee et al., 2005a,b, 2006; Álvarez-Pérez et al., differences (Sugui et al., 2014). The 63 species listed in Table 1 2014; Howard, 2014). For example pathogenic isolates identified are all those that have been described in Aspergillus section as A. viridinutans (Varga et al., 2000; Vinh et al., 2009a; Fumigati and Neosartorya, but some of them are not yet available Kano et al., 2013) proved to be A. felis, A. pseudoviridinutans, for the scientific community, so their identity and probably A. parafelis, or A. pseudofelis (Barrs et al., 2013; Novaková synonymy with other species is unknown. Samson et al. (2007) et al., 2014; Sugui et al., 2014). Aspergillus species in subgenus indicated that several species were synonyms of already known Circumdati have also been reported as pathogenic including species in Aspergillus section Fumigati and Neosartorya. Thus Aspergillus terreus in section Terrei, A. flavus in section Flavi and the total number of species in Fumigati may be less than 63. A. tubingensis in section Nigri, A. persii, and A. tanneri in section Circumdati, A. nidulans in section Nidulantes, (Sugui et al., 2012, 2015; Howard, 2014; Visagie et al., 2014) and Aspergillus CHEMOTAXONOMY OF ASPERGILLUS section Phialosimplex [Ph. caninus = Aspergillus caninus and Ph. SUBGENUS FUMIGATI salinarum = Aspergillus salinarus (Sigler et al., 2010; Greiner et al., 2014)]. Small molecule extrolites (secondary metabolites) Species in subgenus Fumigati can produce many different have been shown to be involved in the infection process (Kamei extrolites (Frisvad and Samson, 1990; Samson et al., 2007; Stack and Watanabe, 2005; Abad et al., 2010), so it might be expected et al., 2007; Varga et al., 2007; Frisvad et al., 2009; Sanchez that the pathogenic Aspergilli produce the same extrolites. In this et al., 2012; Kang et al., 2013; Frisvad and Larsen, 2015) review we examine whether the closely related pathogenic species of which some are specific to section Fumigati, while others in Aspergillus section Fumigati produce the same extrolites. are shared with the closely related section Clavati and the Dichotomomyces clade. Aspergillus cejpii in the Dichotomomyces ASPERGILLUS TAXONOMY clade produces gliotoxin, acetylgliotoxin, acetylgliotoxin G, bis(dethio)bis(methylthio)gliotoxin, fiscalin B, xanthocillin X Since 2011, all ascomycetous species can only have one name monomethylether, tryptoquivalones, emindole SB, emindole SB (Hawksworth et al., 2011; Hawksworth, 2012; McNeill et al., β-mannoside, and 27-O-methylasporyzin (Varga et al., 2007; 2012). All species formerly included in Dichotomomyces, Harms et al., 2014; Rodrigues et al., 2015) possibly in addition Cristaspora, Phialosimplex, Polypaecilum, in addition to to asporyzin A-C, emeniveol, JBIR-03, and asporyergosterol and Penicillium inflatum, have been formally combined into other sterols (Qiao et al., 2010a,b). The producing strain of the Aspergillus (Houbraken et al., 2014; Samson et al., 2014). latter exometabolites was probably misidentified as A. oryzae, Furthermore, all species of Eurotium, Emericella, Chaetosartorya, since none of these exometabolites have ever been found in Fennellia, Neocarpenteles, Neopetromyces, Neosartorya, A. oryzae (Rank et al., 2012). Apart from some few other Petromyces, Saitoa, and Stilbothamnium have also been shared extrolites with Aspergillus species in other sections, most transferred to Aspergillus (Samson et al., 2014). Ascoma extrolites are unique to section Fumigati. producing species in section Fumigati were originally described Aspergillus section Clavati contains species mostly associated under the name Neosartorya (Samson et al., 2006, 2007), but to dung, and have not been reported to cause infections of have now all been transferred to Aspergillus (Samson et al., vertebrate lungs (Varga et al., 2007). Species in Aspergillus section 2014). Several of the species originally thought to produce only Clavati produce several bioactive extrolites, but few of these the asexual state have later been shown to be able to produce are found in Aspergillus section Fumigati.
Recommended publications
  • Succession and Persistence of Microbial Communities and Antimicrobial Resistance Genes Associated with International Space Stati
    Singh et al. Microbiome (2018) 6:204 https://doi.org/10.1186/s40168-018-0585-2 RESEARCH Open Access Succession and persistence of microbial communities and antimicrobial resistance genes associated with International Space Station environmental surfaces Nitin Kumar Singh1, Jason M. Wood1, Fathi Karouia2,3 and Kasthuri Venkateswaran1* Abstract Background: The International Space Station (ISS) is an ideal test bed for studying the effects of microbial persistence and succession on a closed system during long space flight. Culture-based analyses, targeted gene-based amplicon sequencing (bacteriome, mycobiome, and resistome), and shotgun metagenomics approaches have previously been performed on ISS environmental sample sets using whole genome amplification (WGA). However, this is the first study reporting on the metagenomes sampled from ISS environmental surfaces without the use of WGA. Metagenome sequences generated from eight defined ISS environmental locations in three consecutive flights were analyzed to assess the succession and persistence of microbial communities, their antimicrobial resistance (AMR) profiles, and virulence properties. Metagenomic sequences were produced from the samples treated with propidium monoazide (PMA) to measure intact microorganisms. Results: The intact microbial communities detected in Flight 1 and Flight 2 samples were significantly more similar to each other than to Flight 3 samples. Among 318 microbial species detected, 46 species constituting 18 genera were common in all flight samples. Risk group or biosafety level 2 microorganisms that persisted among all three flights were Acinetobacter baumannii, Haemophilus influenzae, Klebsiella pneumoniae, Salmonella enterica, Shigella sonnei, Staphylococcus aureus, Yersinia frederiksenii,andAspergillus lentulus.EventhoughRhodotorula and Pantoea dominated the ISS microbiome, Pantoea exhibited succession and persistence. K. pneumoniae persisted in one location (US Node 1) of all three flights and might have spread to six out of the eight locations sampled on Flight 3.
    [Show full text]
  • Characterization of Aspergillus Flavus Soil and Corn Kernel Populations from Eight Mississippi River States Jorge A
    Louisiana State University LSU Digital Commons LSU Master's Theses Graduate School 11-13-2017 Characterization of Aspergillus Flavus Soil and Corn Kernel Populations From Eight Mississippi River States Jorge A. Reyes Pineda Louisiana State University and Agricultural and Mechanical College, [email protected] Follow this and additional works at: https://digitalcommons.lsu.edu/gradschool_theses Part of the Agricultural Science Commons, Agriculture Commons, and the Plant Pathology Commons Recommended Citation Reyes Pineda, Jorge A., "Characterization of Aspergillus Flavus Soil and Corn Kernel Populations From Eight Mississippi River States" (2017). LSU Master's Theses. 4350. https://digitalcommons.lsu.edu/gradschool_theses/4350 This Thesis is brought to you for free and open access by the Graduate School at LSU Digital Commons. It has been accepted for inclusion in LSU Master's Theses by an authorized graduate school editor of LSU Digital Commons. For more information, please contact [email protected]. CHARACTERIZATION OF ASPERGILLUS FLAVUS SOIL AND CORN KERNEL POPULATIONS FROM EIGHT MISSISSIPPI RIVER STATES A Thesis Submitted to the Graduate Faculty of the Louisiana State University Agricultural and Mechanical College in partial fulfillment of the requirements for the degree of Master of Science in The Department of Plant Pathology and Crop Physiology by Jorge A. Reyes Pineda B.S., Universidad Nacional de Agricultura-Honduras 2011 December 2017 ACKNOWLEDGEMENTS I first thank God who gave me the strength and perseverance to complete the requirements for this degree, and second, I thank my family. Without their unconditional support and encouragement, I would have never been able to achieve this endeavor. I would like to thank my advisory committee, Drs.
    [Show full text]
  • Molecular Identification of Aspergillus Species Collected for The
    JOURNAL OF CLINICAL MICROBIOLOGY, Oct. 2009, p. 3138–3141 Vol. 47, No. 10 0095-1137/09/$08.00ϩ0 doi:10.1128/JCM.01070-09 Copyright © 2009, American Society for Microbiology. All Rights Reserved. Molecular Identification of Aspergillus Species Collected for the Transplant-Associated Infection Surveillance Networkᰔ S. Arunmozhi Balajee,1* Rui Kano,1 John W. Baddley,2,11 Stephen A. Moser,3 Kieren A. Marr,4,5 Barbara D. Alexander,6 David Andes,7 Dimitrios P. Kontoyiannis,8 Giancarlo Perrone,9 Stephen Peterson,10 Mary E. Brandt,1 Peter G. Pappas,2 and Tom Chiller1 Mycotic Diseases Branch, Centers for Disease Control and Prevention, Atlanta, Georgia1; Department of Medicine2 and Department of Pathology,3 University of Alabama at Birmingham, and Department of Medicine, Birmingham Veterans Affairs Medical Center,11 Birmingham, Alabama; Fred Hutchinson Cancer Research Center, Seattle, Washington4; Johns Hopkins University, Baltimore, Maryland5; Duke University, Durham, North Carolina6; University of Wisconsin, Madison, Wisconsin7; M. D. Anderson Cancer Center, Houston, Texas8; Institute of Sciences of Food Production, Downloaded from National Research Council, Bari, Italy9; and National Center for Agricultural Utilization Research, U.S. Department of Agriculture, Peoria, Illinois10 Received 2 June 2009/Returned for modification 29 July 2009/Accepted 3 August 2009 jcm.asm.org from transplant patients with proven (218 ؍ A large aggregate collection of clinical isolates of aspergilli (n or probable invasive aspergillosis was available from the Transplant-Associated Infection Surveillance Net- work, a 6-year prospective surveillance study. To determine the Aspergillus species distribution in this collec- tion, isolates were subjected to comparative sequence analyses by use of the internal transcribed spacer and ␤-tubulin regions.
    [Show full text]
  • Polyphasic Taxonomy of Aspergillus Section Fumigati and Its Teleomorph Neosartorya
    available online at www.studiesinmycology.org STUDIE S IN MYCOLOGY 59: 147–203. 2007. doi:10.3114/sim.2007.59.14 Polyphasic taxonomy of Aspergillus section Fumigati and its teleomorph Neosartorya R.A. Samson1*, S. Hong2, S.W. Peterson3, J.C. Frisvad4 and J. Varga1,5 1CBS Fungal Biodiversity Centre, Uppsalalaan 8, NL-3584 CT Utrecht, The Netherlands; 2Korean Agricultural Culture Collection, NIAB, Suwon, 441-707, Korea; 3Microbial Genomics and Bioprocessing Research Unit, National Center for Agricultural Utilization Research, 1815 N. University Street, Peoria, IL 61604, U.S.A.; 4BioCentrum-DTU, Building 221, Technical University of Denmark, DK-2800 Kgs. Lyngby, Denmark; 5University of Szeged, Faculty of Science and Informatics, Department of Microbiology, P.O. Box 533, H-6701 Szeged, Hungary *Correspondence: Robert A. Samson, [email protected] Abstract: The taxonomy of Aspergillus section Fumigati with its teleomorph genus Neosartorya is revised. The species concept is based on phenotypic (morphology and extrolite profiles) and molecular (β-tubulin and calmodulin gene sequences) characters in a polyphasic approach. Four new taxa are proposed: N. australensis N. ferenczii, N. papuaensis and N. warcupii. All newly described and accepted species are illustrated. The section consists of 33 taxa: 10 strictly anamorphic Aspergillus species and 23 Neosartorya species. Four other Neosartorya species described previously were not available for this monograph, and consequently are relegated to the category of doubtful species. Taxonomic novelties: Neosartorya australensis, N. ferenczii, N. papuaensis, N. warcupii. Key words: Aspergillus section Fumigati, extrolite profiles, Neosartorya, phylogenetics, polyphasic taxonomy. INTRODUCTION can be used for the complete enzymatic recovery of ferulic acid from corn residues (Shin et al.
    [Show full text]
  • Livro-Inpp.Pdf
    GOVERNMENT OF BRAZIL President of Republic Michel Miguel Elias Temer Lulia Minister for Science, Technology, Innovation and Communications Gilberto Kassab MUSEU PARAENSE EMÍLIO GOELDI Director Nilson Gabas Júnior Research and Postgraduate Coordinator Ana Vilacy Moreira Galucio Communication and Extension Coordinator Maria Emilia Cruz Sales Coordinator of the National Research Institute of the Pantanal Maria de Lourdes Pinheiro Ruivo EDITORIAL BOARD Adriano Costa Quaresma (Instituto Nacional de Pesquisas da Amazônia) Carlos Ernesto G.Reynaud Schaefer (Universidade Federal de Viçosa) Fernando Zagury Vaz-de-Mello (Universidade Federal de Mato Grosso) Gilvan Ferreira da Silva (Embrapa Amazônia Ocidental) Spartaco Astolfi Filho (Universidade Federal do Amazonas) Victor Hugo Pereira Moutinho (Universidade Federal do Oeste Paraense) Wolfgang Johannes Junk (Max Planck Institutes) Coleção Adolpho Ducke Museu Paraense Emílio Goeldi Natural resources in wetlands: from Pantanal to Amazonia Marcos Antônio Soares Mário Augusto Gonçalves Jardim Editors Belém 2017 Editorial Project Iraneide Silva Editorial Production Iraneide Silva Angela Botelho Graphic Design and Electronic Publishing Andréa Pinheiro Photos Marcos Antônio Soares Review Iraneide Silva Marcos Antônio Soares Mário Augusto G.Jardim Print Graphic Santa Marta Dados Internacionais de Catalogação na Publicação (CIP) Natural resources in wetlands: from Pantanal to Amazonia / Marcos Antonio Soares, Mário Augusto Gonçalves Jardim. organizers. Belém : MPEG, 2017. 288 p.: il. (Coleção Adolpho Ducke) ISBN 978-85-61377-93-9 1. Natural resources – Brazil - Pantanal. 2. Amazonia. I. Soares, Marcos Antonio. II. Jardim, Mário Augusto Gonçalves. CDD 333.72098115 © Copyright por/by Museu Paraense Emílio Goeldi, 2017. Todos os direitos reservados. A reprodução não autorizada desta publicação, no todo ou em parte, constitui violação dos direitos autorais (Lei nº 9.610).
    [Show full text]
  • The Evolution of Secondary Metabolism Regulation and Pathways in the Aspergillus Genus
    THE EVOLUTION OF SECONDARY METABOLISM REGULATION AND PATHWAYS IN THE ASPERGILLUS GENUS By Abigail Lind Dissertation Submitted to the Faculty of the Graduate School of Vanderbilt University in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY in Biomedical Informatics August 11, 2017 Nashville, Tennessee Approved: Antonis Rokas, Ph.D. Tony Capra, Ph.D. Patrick Abbot, Ph.D. Louise Rollins-Smith, Ph.D. Qi Liu, Ph.D. ACKNOWLEDGEMENTS Many people helped and encouraged me during my years working towards this dissertation. First, I want to thank my advisor, Antonis Rokas, for his support for the past five years. His consistent optimism encouraged me to overcome obstacles, and his scientific insight helped me place my work in a broader scientific context. My committee members, Patrick Abbot, Tony Capra, Louise Rollins-Smith, and Qi Liu have also provided support and encouragement. I have been lucky to work with great people in the Rokas lab who helped me develop ideas, suggested new approaches to problems, and provided constant support. In particular, I want to thank Jen Wisecaver for her mentorship, brilliant suggestions on how to visualize and present my work, and for always being available to talk about science. I also want to thank Xiaofan Zhou for always providing a new perspective on solving a problem. Much of my research at Vanderbilt was only possible with the help of great collaborators. I have had the privilege of working with many great labs, and I want to thank Ana Calvo, Nancy Keller, Gustavo Goldman, Fernando Rodrigues, and members of all of their labs for making the research in my dissertation possible.
    [Show full text]
  • Taxonomy and Evolution of Aspergillus, Penicillium and Talaromyces in the Omics Era – Past, Present and Future
    Computational and Structural Biotechnology Journal 16 (2018) 197–210 Contents lists available at ScienceDirect journal homepage: www.elsevier.com/locate/csbj Taxonomy and evolution of Aspergillus, Penicillium and Talaromyces in the omics era – Past, present and future Chi-Ching Tsang a, James Y.M. Tang a, Susanna K.P. Lau a,b,c,d,e,⁎, Patrick C.Y. Woo a,b,c,d,e,⁎ a Department of Microbiology, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Hong Kong b Research Centre of Infection and Immunology, The University of Hong Kong, Hong Kong c State Key Laboratory of Emerging Infectious Diseases, The University of Hong Kong, Hong Kong d Carol Yu Centre for Infection, The University of Hong Kong, Hong Kong e Collaborative Innovation Centre for Diagnosis and Treatment of Infectious Diseases, The University of Hong Kong, Hong Kong article info abstract Article history: Aspergillus, Penicillium and Talaromyces are diverse, phenotypically polythetic genera encompassing species im- Received 25 October 2017 portant to the environment, economy, biotechnology and medicine, causing significant social impacts. Taxo- Received in revised form 12 March 2018 nomic studies on these fungi are essential since they could provide invaluable information on their Accepted 23 May 2018 evolutionary relationships and define criteria for species recognition. With the advancement of various biological, Available online 31 May 2018 biochemical and computational technologies, different approaches have been adopted for the taxonomy of Asper- gillus, Penicillium and Talaromyces; for example, from traditional morphotyping, phenotyping to chemotyping Keywords: Aspergillus (e.g. lipotyping, proteotypingand metabolotyping) and then mitogenotyping and/or phylotyping. Since different Penicillium taxonomic approaches focus on different sets of characters of the organisms, various classification and identifica- Talaromyces tion schemes would result.
    [Show full text]
  • Challenges in Management of Aflatoxins and Ochratoxin a in Contaminated Raw Materials Esther García Cela
    Nom/Logotip de la Universitat on s’ha llegit la tesi Challenges in management of aflatoxins and ochratoxin A in contaminated raw materials Esther García Cela Dipòsit Legal: L.145-2015 http://hdl.handle.net/10803/285374 ADVERTIMENT. L'accés als continguts d'aquesta tesi doctoral i la seva utilització ha de respectar els drets de la persona autora. Pot ser utilitzada per a consulta o estudi personal, així com en activitats o materials d'investigació i docència en els termes establerts a l'art. 32 del Text Refós de la Llei de Propietat Intel·lectual (RDL 1/1996). Per altres utilitzacions es requereix l'autorització prèvia i expressa de la persona autora. En qualsevol cas, en la utilització dels seus continguts caldrà indicar de forma clara el nom i cognoms de la persona autora i el títol de la tesi doctoral. No s'autoritza la seva reproducció o altres formes d'explotació efectuades amb finalitats de lucre ni la seva comunicació pública des d'un lloc aliè al servei TDX. Tampoc s'autoritza la presentació del seu contingut en una finestra o marc aliè a TDX (framing). Aquesta reserva de drets afecta tant als continguts de la tesi com als seus resums i índexs. ADVERTENCIA. El acceso a los contenidos de esta tesis doctoral y su utilización debe respetar los derechos de la persona autora. Puede ser utilizada para consulta o estudio personal, así como en actividades o materiales de investigación y docencia en los términos establecidos en el art. 32 del Texto Refundido de la Ley de Propiedad Intelectual (RDL 1/1996).
    [Show full text]
  • AR TICLE a Plant Pathology Perspective of Fungal Genome Sequencing
    IMA FUNGUS · 8(1): 1–15 (2017) doi:10.5598/imafungus.2017.08.01.01 A plant pathology perspective of fungal genome sequencing ARTICLE Janneke Aylward1, Emma T. Steenkamp2, Léanne L. Dreyer1, Francois Roets3, Brenda D. Wingfield4, and Michael J. Wingfield2 1Department of Botany and Zoology, Stellenbosch University, Private Bag X1, Matieland 7602, South Africa; corresponding author e-mail: [email protected] 2Department of Microbiology and Plant Pathology, University of Pretoria, Pretoria 0002, South Africa 3Department of Conservation Ecology and Entomology, Stellenbosch University, Private Bag X1, Matieland 7602, South Africa 4Department of Genetics, University of Pretoria, Pretoria 0002, South Africa Abstract: The majority of plant pathogens are fungi and many of these adversely affect food security. This mini- Key words: review aims to provide an analysis of the plant pathogenic fungi for which genome sequences are publically genome size available, to assess their general genome characteristics, and to consider how genomics has impacted plant pathogen evolution pathology. A list of sequenced fungal species was assembled, the taxonomy of all species verified, and the potential pathogen lifestyle reason for sequencing each of the species considered. The genomes of 1090 fungal species are currently (October plant pathology 2016) in the public domain and this number is rapidly rising. Pathogenic species comprised the largest category FORTHCOMING MEETINGS FORTHCOMING (35.5 %) and, amongst these, plant pathogens are predominant. Of the 191 plant pathogenic fungal species with available genomes, 61.3 % cause diseases on food crops, more than half of which are staple crops. The genomes of plant pathogens are slightly larger than those of other fungal species sequenced to date and they contain fewer coding sequences in relation to their genome size.
    [Show full text]
  • Fungal Pathogenesis in Humans the Growing Threat
    Fungal Pathogenesis in Humans The Growing Threat Edited by Fernando Leal Printed Edition of the Special Issue Published in Genes www.mdpi.com/journal/genes Fungal Pathogenesis in Humans Fungal Pathogenesis in Humans The Growing Threat Special Issue Editor Fernando Leal MDPI • Basel • Beijing • Wuhan • Barcelona • Belgrade Special Issue Editor Fernando Leal Instituto de Biolog´ıa Funcional y Genomica/Universidad´ de Salamanca Spain Editorial Office MDPI St. Alban-Anlage 66 4052 Basel, Switzerland This is a reprint of articles from the Special Issue published online in the open access journal Genes (ISSN 2073-4425) from 2018 to 2019 (available at: https://www.mdpi.com/journal/genes/special issues/Fungal Pathogenesis Humans Growing Threat). For citation purposes, cite each article independently as indicated on the article page online and as indicated below: LastName, A.A.; LastName, B.B.; LastName, C.C. Article Title. Journal Name Year, Article Number, Page Range. ISBN 978-3-03897-900-5 (Pbk) ISBN 978-3-03897-901-2 (PDF) Cover image courtesy of Fernando Leal. c 2019 by the authors. Articles in this book are Open Access and distributed under the Creative Commons Attribution (CC BY) license, which allows users to download, copy and build upon published articles, as long as the author and publisher are properly credited, which ensures maximum dissemination and a wider impact of our publications. The book as a whole is distributed by MDPI under the terms and conditions of the Creative Commons license CC BY-NC-ND. Contents About the Special Issue Editor ...................................... vii Fernando Leal Special Issue: Fungal Pathogenesis in Humans: The Growing Threat Reprinted from: Genes 2019, 10, 136, doi:10.3390/genes10020136 ..................
    [Show full text]
  • Discovery of a Sexual Cycle in Aspergillus Lentulus, a Close Relative of A
    Discovery of a Sexual Cycle in Aspergillus lentulus, a Close Relative of A. fumigatus Sameira S. Swilaiman,a Céline M. O’Gorman,a S. Arunmozhi Balajee,b Paul S. Dyera School of Biology, University of Nottingham, University Park, Nottingham, United Kingdoma; Center for Global Health, Centers for Disease Control and Prevention, Atlanta, Georgia, USAb Aspergillus lentulus was described in 2005 as a new species within the A. fumigatus sensu lato complex. It is an opportunistic human pathogen causing invasive aspergillosis with high mortality rates, and it has been isolated from clinical and environmen- tal sources. The species is morphologically nearly identical to A. fumigatus sensu stricto, and this similarity has resulted in their frequent misidentification. Comparative studies show that A. lentulus has some distinguishing growth features and decreased in vitro susceptibility to several antifungal agents, including amphotericin B and caspofungin. Similar to the once-presumed-asex- ual A. fumigatus, it has only been known to reproduce mitotically. However, we now show that A. lentulus has a heterothallic sexual breeding system. A PCR-based mating-type diagnostic detected isolates of either the MAT1-1 or MAT1-2 genotype, and examination of 26 worldwide clinical and environmental isolates revealed similar ratios of the two mating types (38% versus 62%, respectively). MAT1-1 and MAT1-2 idiomorph regions were analyzed, revealing the presence of characteristic alpha and high-mobility-group (HMG) domain genes, together with other more unusual features such as a MAT1-2-4 gene. We then dem- onstrated that A. lentulus possesses a functional sexual cycle with mature cleistothecia, containing heat-resistant ascospores, being produced after 3 weeks of incubation.
    [Show full text]
  • Identification of Culture-Negative Fungi in Blood and Respiratory Samples
    IDENTIFICATION OF CULTURE-NEGATIVE FUNGI IN BLOOD AND RESPIRATORY SAMPLES Farida P. Sidiq A Dissertation Submitted to the Graduate College of Bowling Green State University in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY May 2014 Committee: Scott O. Rogers, Advisor W. Robert Midden Graduate Faculty Representative George Bullerjahn Raymond Larsen Vipaporn Phuntumart © 2014 Farida P. Sidiq All Rights Reserved iii ABSTRACT Scott O. Rogers, Advisor Fungi were identified as early as the 1800’s as potential human pathogens, and have since been shown as being capable of causing disease in both immunocompetent and immunocompromised people. Clinical diagnosis of fungal infections has largely relied upon traditional microbiological culture techniques and examination of positive cultures and histopathological specimens utilizing microscopy. The first has been shown to be highly insensitive and prone to result in frequent false negatives. This is complicated by atypical phenotypes and organisms that are morphologically indistinguishable in tissues. Delays in diagnosis of fungal infections and inaccurate identification of infectious organisms contribute to increased morbidity and mortality in immunocompromised patients who exhibit increased vulnerability to opportunistic infection by normally nonpathogenic fungi. In this study we have retrospectively examined one-hundred culture negative whole blood samples and one-hundred culture negative respiratory samples obtained from the clinical microbiology lab at the University of Michigan Hospital in Ann Arbor, MI. Samples were obtained from randomized, heterogeneous patient populations collected between 2005 and 2006. Specimens were tested utilizing cetyltrimethylammonium bromide (CTAB) DNA extraction and polymerase chain reaction amplification of internal transcribed spacer (ITS) regions of ribosomal DNA utilizing panfungal ITS primers.
    [Show full text]