Frat Oncoproteins Act at the Crossroad of Canonical and Noncanonical Wnt-Signaling Pathways

Total Page:16

File Type:pdf, Size:1020Kb

Frat Oncoproteins Act at the Crossroad of Canonical and Noncanonical Wnt-Signaling Pathways Oncogene (2010) 29, 93–104 & 2010 Macmillan Publishers Limited All rights reserved 0950-9232/10 $32.00 www.nature.com/onc ORIGINAL ARTICLE Frat oncoproteins act at the crossroad of canonical and noncanonical Wnt-signaling pathways R van Amerongen1,2,5, MC Nawijn1,2,6, J-P Lambooij1,2, N Proost1,2, J Jonkers3 and A Berns1,2,4 1Division of Molecular Genetics, Netherlands Cancer Institute, Amsterdam, The Netherlands; 2Centre of Biomedical Genetics, Amsterdam, The Netherlands; 3Division of Molecular Biology, Amsterdam, The Netherlands and 4Academic Medical Center, Amsterdam, The Netherlands Wnt-signal transduction is critical for development and out the animal kingdom. Although Wnt proteins can tissue homeostasis in a wide range of animal species and is elicit multiple intracellular responses, activation of the frequently deregulated in human cancers. Members of the so-called ‘canonical’ or ‘Wnt/b-catenin’ pathway is Frat/GBP family of glycogen synthase kinase 3b (Gsk3b)- currently best understood. In the absence of extra- binding oncoproteins are recognized as potent activators of cellular Wnt, free cytoplasmic b-catenin is sequeste- the Wnt/b-catenin pathway in vertebrates. Here, we reveal red by a multiprotein complex containing APC, Axin1, a novel, Gsk3b-independent function of Frat converging casein kinase I, and glycogen synthase kinase 3b on the activation of JNK and AP-1. Both these have (Gsk3b). Sequential phosphorylation of b-catenin by been used as readouts for the noncanonical Frizzled/PCP the latter two kinases ensures its rapid degradation by pathway, which controls polarized cell movements and the the proteasome (Figure 1a). Binding of Wnt to the establishment of tissue polarity. We find that Frat Frizzled/LRP transmembrane receptor complex results synergizes with Diversin, the mammalian homolog of the in inhibition of Axin and Gsk3b, allowing the accumu- Drosophila PCP protein diego, in the activation of JNK/ lation of transcriptionally active b-catenin/TCF com- AP-1 signaling. Importantly, Frat mutants deficient for plexes (Figure 1b). The initiation of Wnt/b-catenin binding to Gsk3b retain oncogenic activity in vivo, signaling remains an area of intense study, and although suggesting that Wnt/b-catenin-independent events contri- some of the initiating events at the cell membrane have bute to Frat-induced malignant transformation. The been revealed (Bilic et al., 2007; Zeng et al., 2008), the observed activities of Frat are reminiscent of the dual precise mechanism behind Gsk3b inhibition remains to function of Dishevelled in the Wnt/b-catenin and Frizzled/ be resolved. PCP pathways and suggest that Frat may also function to In vertebrates, members of the Frat/GBP family of bridge canonical and noncanonical Wnt pathways. Gsk3b-binding proteins have been shown to compete Oncogene (2010) 29, 93–104; doi:10.1038/onc.2009.310; with Axin for binding to Gsk3b (Yost et al., 1998; Li published online 5 October 2009 et al., 1999a; Ferkey and Kimelman, 2002; Fraser et al., 2002), thereby disrupting the destruction complex and Keywords: Frat; Gsk3-binding protein; lymphoma- causing the accumulation of b-catenin (Figure 1c). genesis; Diversin; Wnt-signal transduction; planar cell Whereas the amphibian Frat ortholog GBP is critically polarity required for axis formation in Xenopus as part of the maternal Wnt pathway (Yost et al., 1998), Frat triple- knockout mice are viable without any overt phenotypic aberrations, indicating that Frat is not essential for Introduction Wnt/b-catenin signaling in mammals (van Amerongen et al., 2005). However, in support of a function for Frat Wnt-signaling controls a variety of biological processes, in canonical Wnt-signal transduction, the endogenous including cell proliferation, cell-fate decisions, and Frat-expression pattern shows remarkable overlap with polarized cell movements. As such, it is crucial for known anatomical sites of active Wnt/b-catenin signal- development and tissue homeostasis in species through- ing (Maretto et al., 2003; van Amerongen et al., 2005). This, together with the fact that Frat remains one of the most potent activators of b-catenin/TCF signaling Correspondence: Dr A Berns, Department of Molecular Genetics, identified to date, suggests that Frat acts as a modifier Netherlands Cancer Institute, Plesmanlaan 121, 1066 CX Amsterdam, to amplify canonical Wnt-pathway activity only under The Netherlands. E-mail: [email protected] specific circumstances. 5Current address: Department of Developmental Biology, Stanford The founding member of the Frat/GBP family, Frat1, University, Stanford, CA 94305, USA. was originally identified as a proto-oncogene in 6Current address: Laboratory Allergology and Pulmonary Diseases, advanced murine T-cell lymphomas (Jonkers et al., Section Pathology and Medical Biology, Groningen University Medical Centre, 9713 GZ, Groningen, The Netherlands. 1997). FRAT overexpression has been observed in a Received 25 March 2009; revised 3 August 2009; accepted 30 limited number of human malignancies (Saitoh and August 2009; published online 5 October 2009 Katoh, 2001; Wang et al., 2006c). FRAT1 was recently Frat activates JNK/AP-1 independent from GSK3 R van Amerongen et al 94 Wnt Frizzled/LRP Frizzled/LRP Frizzled/LRP Frizzled Frat/GBP Dvl Dvl Axin/APC/Gsk3 Axin/APC/Gsk3 Axin/APC/Gsk3 JNK Axin/APC/Gsk3 β-catenin β-catenin β -catenin β-catenin β-catenin β-catenin β-catenin β-catenin/TCF β-catenin/TCF β -catenin AP-1 TCF TCF target genes TCF target genes target genes Wnt/β-catenin OFF Wnt/β-catenin ON Frat/GBP mediated activation Dishevelled functions at the crossroad of of the Wnt/β-catenin pathway Wnt/β-catenin and Frizzled/PCP signaling through inhibition of Gsk3b TOPFLASH luciferase reporter AP-1 luciferase reporter 40 9 8 C Δ myc 7 30 Frat1 Frat1 Frat2 Δ 6 Dvl2 Frat1Frat1 C Frat2 myc 5 20 4 3 10 2 Fold activity relative to vector 1 0 0 vector Dvl2 Frat1 Frat1ΔC Frat2 vector Dvl2 Frat1 Frat1ΔC Frat2 Figure 1 The function of Frat and Dishevelled in Wnt-pathway activation. (a) In the absence of extracellular Wnt, the levels of cytoplasmic b-catenin are controlled by a multiprotein complex containing Axin, APC, and Gsk3b. (b) Binding of Wnt proteins to the Frizzled/LRP receptor complex causes the inhibition of Axin and Gsk3b, allowing b-catenin to accumulate and interact with transcription factors of the TCF/LEF family. (c) Vertebrate Frat/GBP proteins, whereas not critically required for Wnt/b-catenin signaling, are potent inhibitors of Gsk3b and cause an increase in b-catenin/TCF-dependent transcription. (d) Dishevelled functions at the crossroad of Wnt/b-catenin and Frizzled/PCP pathways. It promotes signaling through b-catenin/TCF, but has also been shown to induce the activity of JNK and AP-1. (e) Increasing amounts (25, 50, and 100 ng of DNA transfected) of Dvl2, Frat1, and Frat2 are all able to induce Wnt/b-catenin signaling in 293T cells, as evidenced by the concentration-dependent activation of the b-catenin/TCF- responsive TOPFLASH luciferase reporter. Frat2 is the least potent in this assay. Inset is a western blot depicting the expression levels of Frat1, Frat1DC and Frat2 after detection with an antibody directed against the myc-tag. (f) Increasing amounts (50, 100, and 300 ng of DNA transfected) of Frat2 and Dvl2, but not Frat1, induce a dose-dependent response of an AP-1 luciferase reporter containing seven multimerized AP-1 consensus sites. This effect is not merely because of a difference in protein stability between Frat1 and Frat2, as Frat1DC, which accumulates to higher levels than Frat1 (van Amerongen et al., 2004), is also unable to activate AP-1-dependent transcription. Data are represented as mean±s.e. Inset is a western blot depicting the expression levels of Frat1, Frat1DC, and Frat2 after detection with an antibody directed against the myc-tag. reported to be overexpressed in esophageal squamous is also required for the establishment of tissue polarity cell carcinomas, in which its expression levels were (Figure 1d; Wallingford et al., 2000; Hamblet et al., shown to correlate with the accumulation of b-catenin 2002; Wang et al., 2006a; Etheridge et al., 2008). Here, it (Wang et al., 2008). However, we have been unable functions as a critical component of a ‘noncanonical’ to find direct evidence for increased signaling through Wnt pathway, hereafter referred to as Frizzled/PCP b-catenin/TCF in murine T-cell lymphomas with signaling, mediated through JNK and AP-1 (reviewed in an activated Frat1 allele (our unpublished results), Fanto and McNeill, 2004; Klein and Mlodzik, 2005; indicating that Frat might act on a divergent pathway Jones and Chen, 2007; Wang and Nathans, 2007). in this context. We hypothesized that Frat might also have a dual Frat/GBP has earlier also been shown to interact with function. Our data show that Frat activates JNK and Dishevelled (Yost et al., 1998; Li et al., 1999a; Fraser AP-1 in a Gsk3b-independent manner and to a similar et al., 2002). This observation has thus far been degree as Dvl. Of note, the Gsk3b-binding domain of explained by a model in which Frat bridges signaling Frat is dispensable for its oncogenic activity. We further from Dvl to Gsk3b in activation of the Wnt/b-catenin find that Frat synergizes with Diversin, the mammalian pathway. However, Dishevelled has a dual function, and homolog of the Drosophila PCP protein diego,inthe in addition to activating the Wnt/b-catenin pathway, it activation of both b-catenin/TCF and JNK/AP-1 signaling. Oncogene Frat activates JNK/AP-1 independent from GSK3 R van Amerongen et al 95 As we also observe endogenous expression of Frat2 at phospho-specific antibody directed against the JNK anatomical sites displaying Frizzled/PCP-pathway activity, target residue, Ser63. In agreement with the observed we propose that Frat proteins function at the crossroad increase in JNK kinase activity, we detected elevated of Wnt/b-catenin and Frizzled/PCP-signaling pathways.
Recommended publications
  • Posters A.Pdf
    INVESTIGATING THE COUPLING MECHANISM IN THE E. COLI MULTIDRUG TRANSPORTER, MdfA, BY FLUORESCENCE SPECTROSCOPY N. Fluman, D. Cohen-Karni, E. Bibi Department of Biological Chemistry, Weizmann Institute of Science, Rehovot, Israel In bacteria, multidrug transporters couple the energetically favored import of protons to export of chemically-dissimilar drugs (substrates) from the cell. By this function, they render bacteria resistant against multiple drugs. In this work, fluorescence spectroscopy of purified protein is used to unravel the mechanism of coupling between protons and substrates in MdfA, an E. coli multidrug transporter. Intrinsic fluorescence of MdfA revealed that binding of an MdfA substrate, tetraphenylphosphonium (TPP), induced a conformational change in this transporter. The measured affinity of MdfA-TPP was increased in basic pH, raising a possibility that TPP might bind tighter to the deprotonated state of MdfA. Similar increases in affinity of TPP also occurred (1) in the presence of the substrate chloramphenicol, or (2) when MdfA is covalently labeled by the fluorophore monobromobimane at a putative chloramphenicol interacting site. We favor a mechanism by which basic pH, chloramphenicol binding, or labeling with monobromobimane, all induce a conformational change in MdfA, which results in deprotonation of the transporter and increase in the affinity of TPP. PHENOTYPE CHARACTERIZATION OF AZOSPIRILLUM BRASILENSE Sp7 ABC TRANSPORTER (wzm) MUTANT A. Lerner1,2, S. Burdman1, Y. Okon1,2 1Department of Plant Pathology and Microbiology, Faculty of Agricultural, Food and Environmental Quality Sciences, Hebrew University of Jerusalem, Rehovot, Israel, 2The Otto Warburg Center for Agricultural Biotechnology, Faculty of Agricultural, Food and Environmental Quality Sciences, Hebrew University of Jerusalem, Rehovot, Israel Azospirillum, a free-living nitrogen fixer, belongs to the plant growth promoting rhizobacteria (PGPR), living in close association with plant roots.
    [Show full text]
  • Analysis of the Indacaterol-Regulated Transcriptome in Human Airway
    Supplemental material to this article can be found at: http://jpet.aspetjournals.org/content/suppl/2018/04/13/jpet.118.249292.DC1 1521-0103/366/1/220–236$35.00 https://doi.org/10.1124/jpet.118.249292 THE JOURNAL OF PHARMACOLOGY AND EXPERIMENTAL THERAPEUTICS J Pharmacol Exp Ther 366:220–236, July 2018 Copyright ª 2018 by The American Society for Pharmacology and Experimental Therapeutics Analysis of the Indacaterol-Regulated Transcriptome in Human Airway Epithelial Cells Implicates Gene Expression Changes in the s Adverse and Therapeutic Effects of b2-Adrenoceptor Agonists Dong Yan, Omar Hamed, Taruna Joshi,1 Mahmoud M. Mostafa, Kyla C. Jamieson, Radhika Joshi, Robert Newton, and Mark A. Giembycz Departments of Physiology and Pharmacology (D.Y., O.H., T.J., K.C.J., R.J., M.A.G.) and Cell Biology and Anatomy (M.M.M., R.N.), Snyder Institute for Chronic Diseases, Cumming School of Medicine, University of Calgary, Calgary, Alberta, Canada Received March 22, 2018; accepted April 11, 2018 Downloaded from ABSTRACT The contribution of gene expression changes to the adverse and activity, and positive regulation of neutrophil chemotaxis. The therapeutic effects of b2-adrenoceptor agonists in asthma was general enriched GO term extracellular space was also associ- investigated using human airway epithelial cells as a therapeu- ated with indacaterol-induced genes, and many of those, in- tically relevant target. Operational model-fitting established that cluding CRISPLD2, DMBT1, GAS1, and SOCS3, have putative jpet.aspetjournals.org the long-acting b2-adrenoceptor agonists (LABA) indacaterol, anti-inflammatory, antibacterial, and/or antiviral activity. Numer- salmeterol, formoterol, and picumeterol were full agonists on ous indacaterol-regulated genes were also induced or repressed BEAS-2B cells transfected with a cAMP-response element in BEAS-2B cells and human primary bronchial epithelial cells by reporter but differed in efficacy (indacaterol $ formoterol .
    [Show full text]
  • The Database of Chromosome Imbalance Regions and Genes
    Lo et al. BMC Cancer 2012, 12:235 http://www.biomedcentral.com/1471-2407/12/235 RESEARCH ARTICLE Open Access The database of chromosome imbalance regions and genes resided in lung cancer from Asian and Caucasian identified by array-comparative genomic hybridization Fang-Yi Lo1, Jer-Wei Chang1, I-Shou Chang2, Yann-Jang Chen3, Han-Shui Hsu4, Shiu-Feng Kathy Huang5, Fang-Yu Tsai2, Shih Sheng Jiang2, Rajani Kanteti6, Suvobroto Nandi6, Ravi Salgia6 and Yi-Ching Wang1* Abstract Background: Cancer-related genes show racial differences. Therefore, identification and characterization of DNA copy number alteration regions in different racial groups helps to dissect the mechanism of tumorigenesis. Methods: Array-comparative genomic hybridization (array-CGH) was analyzed for DNA copy number profile in 40 Asian and 20 Caucasian lung cancer patients. Three methods including MetaCore analysis for disease and pathway correlations, concordance analysis between array-CGH database and the expression array database, and literature search for copy number variation genes were performed to select novel lung cancer candidate genes. Four candidate oncogenes were validated for DNA copy number and mRNA and protein expression by quantitative polymerase chain reaction (qPCR), chromogenic in situ hybridization (CISH), reverse transcriptase-qPCR (RT-qPCR), and immunohistochemistry (IHC) in more patients. Results: We identified 20 chromosomal imbalance regions harboring 459 genes for Caucasian and 17 regions containing 476 genes for Asian lung cancer patients. Seven common chromosomal imbalance regions harboring 117 genes, included gain on 3p13-14, 6p22.1, 9q21.13, 13q14.1, and 17p13.3; and loss on 3p22.2-22.3 and 13q13.3 were found both in Asian and Caucasian patients.
    [Show full text]
  • GSK-3) in Dictyostelium Discoideum and the Role of GSK-3 Binding Partners in Dictyostelium Discoideum and Mammalian Cells
    Investigation into the role of Glycogen Synthase Kinase 3 (GSK-3) in Dictyostelium discoideum and the role of GSK-3 binding partners in Dictyostelium discoideum and mammalian cells Josephine E. Forde School of Biosciences Cardiff University PhD Thesis Submitted: November 2009 UMI Number: U585B60 All rights reserved INFORMATION TO ALL USERS The quality of this reproduction is dependent upon the quality of the copy submitted. In the unlikely event that the author did not send a complete manuscript and there are missing pages, these will be noted. Also, if material had to be removed, a note will indicate the deletion. Dissertation Publishing UMI U585B60 Published by ProQuest LLC 2013. Copyright in the Dissertation held by the Author. Microform Edition © ProQuest LLC. All rights reserved. This work is protected against unauthorized copying under Title 17, United States Code. ProQuest LLC 789 East Eisenhower Parkway P.O. Box 1346 Ann Arbor, Ml 48106-1346 Ca r d if f UNIVERSITY PRIFYSGOL DECLARATION C a e RD yi §> This work has not previously been accepted in substance for any degree and is not concurrently submitted in candidature for any degree. Signed ........... d & c k . - . ...................... (candidate) Date ... ! H | Q s | a o \ p .......... STATEMENT 1 This thesis is being submitted in partial fulfillment of the requirements for the degree of .................... (insert MCh, MD, MPhil, PhD etc, as appropriate) Signed .......d & 0 ( L : ...................... (candidate) Date ........... STATEMENT 2 This thesis is the result of my own independent work/investigation, except where otherwise stated. Other sources are acknowledged by explicit references. Signed d 6 < L - . ............................ (candidate) Date .
    [Show full text]
  • Rewirable Gene Regulatory Networks in the Preimplantation Embryonic Development of Three Mammalian Species
    Downloaded from genome.cshlp.org on September 26, 2021 - Published by Cold Spring Harbor Laboratory Press Research Rewirable gene regulatory networks in the preimplantation embryonic development of three mammalian species Dan Xie,1,9 Chieh-Chun Chen,1,9 Leon M. Ptaszek,2,3,4,9 Shu Xiao,1 Xiaoyi Cao,5 Fang Fang,6 Huck H. Ng,6 Harris A. Lewin,7 Chad Cowan,3,4 and Sheng Zhong1,7,8,10 1Department of Bioengineering, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA; 2Cardiology Division, Massachusetts General Hospital and Harvard Medical School, Boston, Massachusetts 02114, USA; 3Harvard Stem Cell Institute, Harvard University, Cambridge, Massachusetts 02138, USA; 4Cardiovascular Research Center, Massachusetts General Hospital and Harvard Medical School, Boston, Massachusetts 02114, USA; 5Center for Biophysics and Computational Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA; 6Gene Regulation Laboratory, Genome Institute of Singapore, 138672 Singapore, Singapore; 7Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA; 8Department of Statistics, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA Mammalian preimplantation embryonic development (PED) is thought to be governed by highly conserved processes. While it had been suggested that some plasticity of conserved signaling networks exists among different mammalian species, it was not known to what extent modulation of the genomes and the regulatory proteins could ‘‘rewire’’ the gene regulatory networks (GRN) that control PED. We therefore generated global transcriptional profiles from three mam- malian species (human, mouse, and bovine) at representative stages of PED, including: zygote, two-cell, four-cell, eight-cell, 16-cell, morula and blastocyst.
    [Show full text]
  • Peptidomic Discovery of Short Open Reading Frame-Encoded Peptides in Human Cells
    Peptidomic discovery of short open reading frame-encoded peptides in human cells The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citation Slavoff, Sarah A., Andrew J. Mitchell, Adam G. Schwaid, Moran N. Cabili, Jiao Ma, Joshua Z. Levin, Amir D. Karger, Bogdan A. Budnik, John L. Rinn, and Alan Saghatelian. 2013. “Peptidomic discovery of short open reading frame-encoded peptides in human cells.” Nature chemical biology 9 (1): 59-64. doi:10.1038/nchembio.1120. http:// dx.doi.org/10.1038/nchembio.1120. Published Version doi:10.1038/nchembio.1120 Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:11717493 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Other Posted Material, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#LAA NIH Public Access Author Manuscript Nat Chem Biol. Author manuscript; available in PMC 2013 July 01. NIH-PA Author ManuscriptPublished NIH-PA Author Manuscript in final edited NIH-PA Author Manuscript form as: Nat Chem Biol. 2013 January ; 9(1): 59–64. doi:10.1038/nchembio.1120. Peptidomic discovery of short open reading frame-encoded peptides in human cells Sarah A. Slavoff1, Andrew J. Mitchell2,*, Adam G. Schwaid1,*, Moran N. Cabili3,4,5, Jiao Ma1, Joshua Z. Levin6, Amir D. Karger7, Bogdan A. Budnik8, John L. Rinn3,5, and Alan Saghatelian1,† 1Department of Chemistry and Chemical Biology, Harvard University,
    [Show full text]
  • Insulin-Like Growth Factor 1 Is a Direct HOXA9 Target Important for Hematopoietic Transformation
    Leukemia (2015) 29, 901–908 © 2015 Macmillan Publishers Limited All rights reserved 0887-6924/15 www.nature.com/leu ORIGINAL ARTICLE Insulin-like growth factor 1 is a direct HOXA9 target important for hematopoietic transformation J Steger, E Füller, M-P Garcia-Cuellar, K Hetzner and RK Slany HOX homeobox proteins are key oncogenic drivers in hematopoietic malignancies. Here we demonstrate that HOXA1, HOXA6 and predominantly HOXA9 are able to induce the production of insulin-like growth factor 1 (Igf1). In chromatin immunoprecipitations, HOXA9 bound directly to the putative promoter and a DNase-hypersensitive region in the first intron of the Igf1 gene. Transcription rates of the Igf1 gene paralleled HOXA9 activity. Primary cells transformed by HOXA9 expressed functional Igf1 receptors and activated the protein kinase Akt in response to Igf1 stimulation, suggesting the existence of an autocrine signaling loop. Genomic deletion of the Igf1 gene by Cre-mediated recombination increased sensitivity toward apoptosis after serum starvation. In addition, the leukemogenic potential of Igf1-negative, HOXA9-transformed cells was impaired, leading to a significant delay in disease development on transplantation into recipient animals. Leukemia (2015) 29, 901–908; doi:10.1038/leu.2014.287 INTRODUCTION factor FGF2 (fibroblast growth factor) are regulated by HOX 14,15 HOX homeobox genes are increasingly acknowledged as impor- proteins. Apart from these examples and despite the tant drivers of malignant transformation in the hematopoietic discovery of numerous HOXA9-binding sites across the genome 16 system. In line with their major regulatory role in hematopoietic by chromatin immunoprecipitation-sequencing ChIP-Seq, func- stem and precursor cell populations, HOX transcription needs to tionally characterized HOX targets are scarce.
    [Show full text]
  • De Novo Transcriptome Assembly and Functional Annotation in Five Species of Bats Received: 2 October 2018 Diana D
    www.nature.com/scientificreports OPEN De Novo Transcriptome Assembly and Functional Annotation in Five Species of Bats Received: 2 October 2018 Diana D. Moreno-Santillán1, Carlos Machain-Williams2, Georgina Hernández-Montes3 & Accepted: 1 April 2019 Jorge Ortega1 Published: xx xx xxxx High-throughput RNA sequencing is a powerful tool that allows us to perform gene prediction and analyze tissue-specifc overexpression of genes, but also at species level comparisons can be performed, although in a more restricted manner. In the present study complete liver transcriptomes of fve tropical bat species were De novo assembled and annotated. Highly expressed genes in the fve species were involved in glycolysis and lipid metabolism pathways. Cross-species diferential expression analysis was conducted using single copy orthologues shared across the fve species. Between 22 and 29 orthologs were upregulated for each species. We detected upregulated expression in Artibeus jamaicensis genes related to fructose metabolism pathway. Such fndings can be correlated with A. jamaicensis dietary habits, as it was the unique frugivorous species included. This is the frst report of transcriptome assembly by RNA-seq in these species, except for A. jamaicensis and as far as our knowledge is the frst cross-species comparisons of transcriptomes and gene expression in tropical bats. Te order Chiroptera is the second largest order of mammals and is divided into: two suborders: Yinpterochiroptera and Yangochiroptera1. Its diversity includes and estimated ~1,331 species distributed throughout the world, except for the polar regions and isolated islands. Bats present a wide diversity of feeding habits and may be carnivorous, frugivorous, hematophagous, insectivorous or nectarivorous2; as a consequence, chiropters play a crucial roles in the maintenance of the ecosystem balance by providing important ecological services; two-thirds of bats species are insec- tivorous and as such are considered biological pests controls of agricultural importance2.
    [Show full text]
  • 393LN V 393P 344SQ V 393P Probe Set Entrez Gene
    393LN v 393P 344SQ v 393P Entrez fold fold probe set Gene Gene Symbol Gene cluster Gene Title p-value change p-value change chemokine (C-C motif) ligand 21b /// chemokine (C-C motif) ligand 21a /// chemokine (C-C motif) ligand 21c 1419426_s_at 18829 /// Ccl21b /// Ccl2 1 - up 393 LN only (leucine) 0.0047 9.199837 0.45212 6.847887 nuclear factor of activated T-cells, cytoplasmic, calcineurin- 1447085_s_at 18018 Nfatc1 1 - up 393 LN only dependent 1 0.009048 12.065 0.13718 4.81 RIKEN cDNA 1453647_at 78668 9530059J11Rik1 - up 393 LN only 9530059J11 gene 0.002208 5.482897 0.27642 3.45171 transient receptor potential cation channel, subfamily 1457164_at 277328 Trpa1 1 - up 393 LN only A, member 1 0.000111 9.180344 0.01771 3.048114 regulating synaptic membrane 1422809_at 116838 Rims2 1 - up 393 LN only exocytosis 2 0.001891 8.560424 0.13159 2.980501 glial cell line derived neurotrophic factor family receptor alpha 1433716_x_at 14586 Gfra2 1 - up 393 LN only 2 0.006868 30.88736 0.01066 2.811211 1446936_at --- --- 1 - up 393 LN only --- 0.007695 6.373955 0.11733 2.480287 zinc finger protein 1438742_at 320683 Zfp629 1 - up 393 LN only 629 0.002644 5.231855 0.38124 2.377016 phospholipase A2, 1426019_at 18786 Plaa 1 - up 393 LN only activating protein 0.008657 6.2364 0.12336 2.262117 1445314_at 14009 Etv1 1 - up 393 LN only ets variant gene 1 0.007224 3.643646 0.36434 2.01989 ciliary rootlet coiled- 1427338_at 230872 Crocc 1 - up 393 LN only coil, rootletin 0.002482 7.783242 0.49977 1.794171 expressed sequence 1436585_at 99463 BB182297 1 - up 393
    [Show full text]
  • Catenin Signalling Van Der Wal, T.; Lambooij, J.-P.; Van Amerongen, R
    UvA-DARE (Digital Academic Repository) TMEM98 is a negative regulator of FRAT mediated Wnt/ß-catenin signalling van der Wal, T.; Lambooij, J.-P.; van Amerongen, R. DOI 10.1371/journal.pone.0227435 Publication date 2020 Document Version Final published version Published in PLoS ONE License CC BY Link to publication Citation for published version (APA): van der Wal, T., Lambooij, J-P., & van Amerongen, R. (2020). TMEM98 is a negative regulator of FRAT mediated Wnt/ß-catenin signalling. PLoS ONE, 15(1), [e0227435]. https://doi.org/10.1371/journal.pone.0227435 General rights It is not permitted to download or to forward/distribute the text or part of it without the consent of the author(s) and/or copyright holder(s), other than for strictly personal, individual use, unless the work is under an open content license (like Creative Commons). Disclaimer/Complaints regulations If you believe that digital publication of certain material infringes any of your rights or (privacy) interests, please let the Library know, stating your reasons. In case of a legitimate complaint, the Library will make the material inaccessible and/or remove it from the website. Please Ask the Library: https://uba.uva.nl/en/contact, or a letter to: Library of the University of Amsterdam, Secretariat, Singel 425, 1012 WP Amsterdam, The Netherlands. You will be contacted as soon as possible. UvA-DARE is a service provided by the library of the University of Amsterdam (https://dare.uva.nl) Download date:02 Oct 2021 RESEARCH ARTICLE TMEM98 is a negative regulator of FRAT mediated
    [Show full text]
  • Determining Multifunctional Genes and Diseases in Human Using Gene Ontology
    Determining Multifunctional Genes and Diseases in Human Using Gene Ontology Hisham Al-Mubaid1, Sasikanth Potu1, and M. Shenify2 1Dept. of Computer Science. University of Houston - Clear Lake, Houston, TX 77058, USA 2University of Baha, Baha, KSA 1Email: [email protected] Abstract diseases in human. A great body of research has been The study of human genes and diseases is very rewarding conducted in the past two decades addressing the similarity and can lead to improvements in healthcare, disease between genes using various sources and most commonly diagnostics and drug discovery. In this paper, we further using the Gene Ontology (GO) [5, 6]. GO has been our previous study on gene–disease relationship extensively used to compute the similarity between genes specifically with the multifunctional genes. We investigate (details in section 3) [19, 20]. In this work, we use the the multifunctional gene–disease relationship based on the functional annotations of a gene from the Gene Ontology published molecular function annotations of genes from Annotation (GOA) databases to compute the shortest the Gene Ontology which is the most comprehensive distance (path length) between the Molecular Function source on gene functions. We present a computational (mf) GO terms annotating the gene. In the GO, molecular approach based on path length between molecular function function (mf) terms are organized as nodes in a tree-like annotations as our main metric for estimating the semantics directed acyclic graph (DAG). For example, Figure 1 of gene functions and multifunctionality in connection with exhibits 7 nodes representing 7 molecular function terms in gene–disease association. We utilized functional genomics GO [5, 6].
    [Show full text]
  • Beryllium Is a Potent and Unique GSK-3Β Inhibitor with Potential to Differentially Regulate Glycogen Synthase and Β-Catenin
    UNLV Theses, Dissertations, Professional Papers, and Capstones 5-1-2015 Beryllium is a potent and unique GSK-3β inhibitor with potential to differentially regulate glycogen synthase and β-catenin Ata Ur Rahman Mohammed Abdul University of Nevada, Las Vegas Follow this and additional works at: https://digitalscholarship.unlv.edu/thesesdissertations Part of the Biochemistry Commons, and the Chemistry Commons Repository Citation Mohammed Abdul, Ata Ur Rahman, "Beryllium is a potent and unique GSK-3β inhibitor with potential to differentially regulate glycogen synthase and β-catenin" (2015). UNLV Theses, Dissertations, Professional Papers, and Capstones. 2391. http://dx.doi.org/10.34917/7645977 This Dissertation is protected by copyright and/or related rights. It has been brought to you by Digital Scholarship@UNLV with permission from the rights-holder(s). You are free to use this Dissertation in any way that is permitted by the copyright and related rights legislation that applies to your use. For other uses you need to obtain permission from the rights-holder(s) directly, unless additional rights are indicated by a Creative Commons license in the record and/or on the work itself. This Dissertation has been accepted for inclusion in UNLV Theses, Dissertations, Professional Papers, and Capstones by an authorized administrator of Digital Scholarship@UNLV. For more information, please contact [email protected]. BERYLLIUM IS A POTENT AND UNIQUE GSK-3β INHIBITOR WITH POTENTIAL TO DIFFERENTIALLY REGULATE GLYCOGEN SYNTHASE AND β-CATENIN
    [Show full text]