DNA Stands for Deoxyribose Nucleic Acid

Total Page:16

File Type:pdf, Size:1020Kb

DNA Stands for Deoxyribose Nucleic Acid DNA and Protein Synthesis DNA • DNA stands for deoxyribose nucleic acid. • This chemical substance is found in the nucleus of all cells in all living organisms • DNA controls all the chemical changes which take place in cells • The kind of cell which is formed, (muscle, blood, nerve etc) is controlled by DNA Ribose is a sugar, like glucose, but with only five carbon atoms in its molecule. Deoxyribose is almost the same but lacks one oxygen atom. The nitrogen bases are: o ADENINE (A) o THYMINE (T) o CYTOSINE (C) o GUANINE (G) Nucleotides • A molecule of DNA is formed by millions of nucleotides joined together in a long chain. • DNA is a very large molecule made up of a long chain of sub-units. • The sub-units are called nucleotides. • Each nucleotide is made up of a sugar called deoxyribose, a phosphate group -PO4 and an organic (Nitrogen) base: A, T, C, G BASE PAIRING RULE amount of C= amount of G AND amount of A= amount of T • Adenine always pairs with thymine, and guanine always pairs with cytosine. DNA STRUCTURE • The nucleotide bases will point to the inside of the DNA molecule while the outside (backbone) of the DNA molecule will be made of the sugar and phosphate molecules. • When complete the DNA molecule forms a double helix (two spiral sides wrapped together). • The paired strands are coiled into a spiral called A DOUBLE HELIX. Genes • Each chromosome contains hundreds of genes. • Most of your characteristics: hair color, height, how things taste to a person, are determined by the kinds of proteins cells make (gene). • Proteins are made of chains of hundreds or thousands of amino acids. • The instructions for making a specific protein are found in a gene which is a section of DNA on a chromosome. • The gene determines the order of amino acids in a protein. • Changing the order of the amino acids makes a different protein. • REMEMBER: One gene makes one protein! DNA REPLICATION • Why do we replicate DNA? • When chromosomes are duplicated before mitosis or meiosis, the amount of DNA in the nucleus is doubled. STEPS OF DNA REPLICATION 1. DNA replicates (duplicates) itself in the nucleus when prepare to divide during mitosis 2. DNA molecule separates into two strands (unzips) 3. Each new strand will match up with free nucleotides present in the nucleus until two new IDENTICAL strands of DNA are formed 4. Each new DNA molecules carries the same base code as the original strand PROTEIN SYNTHESIS • It is the process by which GENOTYPE (genetic makeup) is translated into PHENOTYPE (physical traits) • Process by which DNA code is translated into proteins. • Genes are found in the nucleus, but proteins are made on ribosomes in cytoplasm. • The codes for making proteins are carried from the nucleus to the ribosomes by another type of nucleic acid called ribonucleic acid, or RNA. • COMPARING DNA AND RNA RNA DNA *Single stranded *Double stranded *Base pairs: *Base pairs: C-G, A-U C-G, A-T *Ribose sugar *Deoxyribose sugar • The three main kinds of RNA made from DNA in a cell’s nucleus are messenger RNA (mRNA), ribosomal (rRNA), and transfer RNA (tRNA). Part 1: TRANSCRIPTION Protein production begins when mRNA moves into the cytoplasm. Step 1: An enzyme “unzips” a section of DNA Step 2: messenger RNA (mRna) Step 3: RNA bases match up to their complimentary base on the DNA strand. The bases continue to match- up until it reaches a stop code. At the END of TRANSCRIPTION: We get a mRNA strand ready for translation– each triplet code on the MRNA strand is called a CODON. TRANSCRIPTION PART 2:TRANSLATION Step 1:mRNA made in transcription attaches to a ribosome Step 2: tRNA creates a complementary strand to the codon. A tRNA carries a set of 3 bases called an ANTICODON the tRNA carries a specific amino acid that matches the anti-codon CODON- 3 base section on the mRNA Step 3: The tRNA matches up with a 3 base section (codon) on the mRNA. For Example: CODON- UGG (mRNA) ANTICODON-ACC (tRNA) Step 4:As each anticodon matches up with it complimentary codon it leaves behind its amino acid creating a chain. How do genes know when to “turn on” or “turn off” protein making? Some codons code for START and others for STOP. What did we get from TRANSLATION? Genetic information from the mRNA is translated into a PROTEIN! Complete the example on the following example using the Genetic Code chart. DNA STRAND: ATT CCG GTA CTG ATT GUG CGT TGA CCA MRNA –CODON: _____ ______ ______ _______ ______ ________ _______ _______ _______ TRNA-ANTICODON: _____ ______ ______ _____________ ________ _______ _______ _______ RRNA-(AA) _____-_______-______-______- _______-_______-_______-______- _______ TRANSLATION Mutations • If DNA is not copied exactly, the proteins made from the instructions might not be made correctly. • These mistakes, called mutations, are any permanent change in the DNA sequence of a gene or chromosome of a cell. • Outside factors such as X rays, sunlight, and some chemicals have been known to cause mutations. • All mutations are not bad! • Most mutations have little or no effect on the organism’s function. • Mutations are a source of variation in a population (crossover) • Only mutations found in sex cells can be inherited by the offspring in sexually reproducing organisms. Mutagen- a factor in the environment that can cause DNA mutations. Ex: radiation, nuclear chemicals Carcinogen- an agent that causes or tends to cause cancer. Ex: tar in cigarettes, certain viruses, certain drugs, UV rays Impact of the Environment • Although genes determine many of your traits, you might be able to influence their expression by the decisions you make. • For instance, if some people at risk for skin cancer limit their exposure to the Sun and take care of their skin, they might never develop cancer. • Every organism has a specific number of chromosomes. • However, mistakes in the process of meiosis can result in a new organism with more or fewer chromosomes than normal. • If three copies of chromosome 21 are produced in the fertilized human egg, Down’s syndrome results. MUTATION TYPE: ADDITION Genetic Engineering • Through genetic engineering, scientists are experimenting with biological and chemical methods to change the arrangement of DNA that makes up a gene. • Genetic engineering already is used to help produce large volumes of medicine. Recombinant DNA • Recombinant DNA is made by inserting a useful segment of DNA from one organism into a bacterium. • Recombinant DNA is made by inserting a useful segment of DNA from one organism into a bacterium. • This method is used to produce human insulin, human growth hormone, and other chemicals by bacteria. Genetically Engineered Plants • Genetic engineering can produce improvements in crop plants, such as corn, wheat, and rice. • One type of genetic engineering involves finding the genes that produce desired traits in one plant and then inserting those genes into a different plant. .
Recommended publications
  • 1. Nucleotides A. Pentose Sugars – 5-Carbon Sugar 1) Deoxyribose – in DNA 2) Ribose – in RNA B. Phosphate Group C. Nitroge
    1. Nucleotides a. Pentose sugars – 5-Carbon sugar 1) Deoxyribose – in DNA 2) Ribose – in RNA b. Phosphate group c. Nitrogenous bases 1) Purines a) Adenine b) Guanine 2) Pyrimidines a) Cytosine b) Thymine 2. Types of Nucleic Acids a. DNA 1) Locations 2) Functions b. RNA 1) Locations 2) Functions E. High Energy Biomolecules 1. Adenosine triphosphate a. Uses 1) Active transport 2) Movement 3) Biosynthesis reactions b. Regeneration 1) ADP + Pi + Energy → ATP 4. Classes of proteins a. Structural – ex. Collagen, keratin b. Transport – Hemoglobin, many β-globulins c. Contractile – Actin and Myosin of muscle tissue d. Regulatory - Hormones e. Immunologic - Antibodies f. Clotting – Thrombin and Fibrin g. Osmotic - Albumin h. Catalytic – Enzymes 1) Characteristics of enzymes • Proteins (most); ribonucleoproteins (few/ribozymes) • Act as organic catalysts • Lower the activation energy of reactions • Not changed by the reaction • Bind to their substrates o Lock-and-key model of enzyme activity o Induced-fit model • Highly specific • Named by adding -ase to substrate name; e.g., maltose/maltase • May require cofactors which may be: o Nonprotein metal ions such as copper, manganese, potassium, sodium o Small organic molecules known as coenzymes. The B vitamins like thiamine (B1) riboflavin (B2) and nicotinamide are precursors of coenzymes. • May require activation; e.g., pepsinogen pepsin in stomach chief cells 4. Factors Affecting Enzyme Action • pH o pepsin (stomach) @ pH = 2; trypsin (small int.) @ pH = 8 • Temperature o Denatured by high temp’s. • Enzyme inhibitors o Competitive inhibitors o Noncompetitive inhibitors • Effect of substrate concentration and reversible reactions and the Law of Mass D.
    [Show full text]
  • Multi-Enzymatic Cascades in the Synthesis of Modified Nucleosides
    biomolecules Article Multi-Enzymatic Cascades in the Synthesis of Modified Nucleosides: Comparison of the Thermophilic and Mesophilic Pathways Ilja V. Fateev , Maria A. Kostromina, Yuliya A. Abramchik, Barbara Z. Eletskaya , Olga O. Mikheeva, Dmitry D. Lukoshin, Evgeniy A. Zayats , Maria Ya. Berzina, Elena V. Dorofeeva, Alexander S. Paramonov , Alexey L. Kayushin, Irina D. Konstantinova * and Roman S. Esipov Shemyakin and Ovchinnikov Institute of Bioorganic Chemistry RAS, Miklukho-Maklaya 16/10, 117997 GSP, B-437 Moscow, Russia; [email protected] (I.V.F.); [email protected] (M.A.K.); [email protected] (Y.A.A.); [email protected] (B.Z.E.); [email protected] (O.O.M.); [email protected] (D.D.L.); [email protected] (E.A.Z.); [email protected] (M.Y.B.); [email protected] (E.V.D.); [email protected] (A.S.P.); [email protected] (A.L.K.); [email protected] (R.S.E.) * Correspondence: [email protected]; Tel.: +7-905-791-1719 ! Abstract: A comparative study of the possibilities of using ribokinase phosphopentomutase ! nucleoside phosphorylase cascades in the synthesis of modified nucleosides was carried out. Citation: Fateev, I.V.; Kostromina, Recombinant phosphopentomutase from Thermus thermophilus HB27 was obtained for the first time: M.A.; Abramchik, Y.A.; Eletskaya, a strain producing a soluble form of the enzyme was created, and a method for its isolation and B.Z.; Mikheeva, O.O.; Lukoshin, D.D.; chromatographic purification was developed. It was shown that cascade syntheses of modified nu- Zayats, E.A.; Berzina, M.Y..; cleosides can be carried out both by the mesophilic and thermophilic routes from D-pentoses: ribose, Dorofeeva, E.V.; Paramonov, A.S.; 2-deoxyribose, arabinose, xylose, and 2-deoxy-2-fluoroarabinose.
    [Show full text]
  • (12) United States Patent (10) Patent No.: US 8,604,000 B2 De Kort Et Al
    USOO8604000B2 (12) United States Patent (10) Patent No.: US 8,604,000 B2 de Kort et al. (45) Date of Patent: Dec. 10, 2013 (54) PALATABLE NUTRITIONAL COMPOSITION 2011/0027391 A1 2/2011 De Kort et al. COMPRISING ANUCLEOTDE AND/ORA 2013, OO12469 A1 1/2013 De Kort et al. NUCLEOSDE AND A TASTE MASKING 2013, OO18012 A1 1/2013 Hageman et al. AGENT FOREIGN PATENT DOCUMENTS (75) Inventors: Esther Jacqueline de Kort, Wageningen EP O 175468 A2 3, 1986 (NL); Martine Groenendijk, EP 1216 041 B1 6, 2002 EP 1282 365 B1 2, 2003 Barendrecht (NL); Patrick Joseph EP 1656 839 A1 5, 2006 Gerardus Hendrikus Kamphuis, EP 1666 092 A2 6, 2006 Utrecht (NL) EP 18OO 675 A1 6, 2007 JP 64-080250 A 3, 1989 (73) Assignee: N.V. Nutricia, Zoetermeer (NL) JP 06-237734. A 8, 1994 JP 10-004918 A 1, 1998 JP 10-136937 A 5, 1998 (*) Notice: Subject to any disclaimer, the term of this JP 11-071274. A 3, 1999 patent is extended or adjusted under 35 WO WO-0038829 A1 T 2000 U.S.C. 154(b) by 213 days. WO WO-01 (32034 A1 5, 2001 WO WO-02/088159 A1 11, 2002 WO WO-02/096464 A1 12/2002 (21) Appl. No.: 12/809,431 WO WO-03 (013276 A1 2, 2003 WO WO-03/041701 A2 5, 2003 (22) PCT Filed: Dec. 22, 2008 WO WO-2005/039597 A2 5, 2005 WO WO-2006/031683 A2 3, 2006 (86). PCT No.: PCT/NL2O08/050843 WO WO-2006,118665 A2 11/2006 WO WO-2006, 127620 A2 11/2006 S371 (c)(1), WO WO-2007/001883 A2 1, 2007 (2), (4) Date: Dec.
    [Show full text]
  • Nucleosides & Nucleotides
    Nucleosides & Nucleotides Biochemistry Fundamentals > Genetic Information > Genetic Information NUCLEOSIDE AND NUCLEOTIDES SUMMARY NUCLEOSIDES  • Comprise a sugar and a base NUCLEOTIDES  • Phosphorylated nucleosides (at least one phosphorus group) • Link in chains to form polymers called nucleic acids (i.e. DNA and RNA) N-BETA-GLYCOSIDIC BOND  • Links nitrogenous base to sugar in nucleotides and nucleosides • Purines: C1 of sugar bonds with N9 of base • Pyrimidines: C1 of sugar bonds with N1 of base PHOSPHOESTER BOND • Links C3 or C5 hydroxyl group of sugar to phosphate NITROGENOUS BASES  • Adenine • Guanine • Cytosine • Thymine (DNA) 1 / 8 • Uracil (RNA) NUCLEOSIDES • =sugar + base • Adenosine • Guanosine • Cytidine • Thymidine • Uridine NUCLEOTIDE MONOPHOSPHATES – ADD SUFFIX 'SYLATE' • = nucleoside + 1 phosphate group • Adenylate • Guanylate • Cytidylate • Thymidylate • Uridylate Add prefix 'deoxy' when the ribose is a deoxyribose: lacks a hydroxyl group at C2. • Thymine only exists in DNA (deoxy prefix unnecessary for this reason) • Uracil only exists in RNA NUCLEIC ACIDS (DNA AND RNA)  • Phosphodiester bonds: a phosphate group attached to C5 of one sugar bonds with - OH group on C3 of next sugar • Nucleotide monomers of nucleic acids exist as triphosphates • Nucleotide polymers (i.e. nucleic acids) are monophosphates • 5' end is free phosphate group attached to C5 • 3' end is free -OH group attached to C3 2 / 8 FULL-LENGTH TEXT • Here we will learn about learn about nucleoside and nucleotide structure, and how they create the backbones of nucleic acids (DNA and RNA). • Start a table, so we can address key features of nucleosides and nucleotides. • Denote that nucleosides comprise a sugar and a base.
    [Show full text]
  • Part 1 in Our Series of Carbohydrate Lectures. in This Section, You Will Learn About Monosaccharide Structure
    Welcome to Part 1 in our series of Carbohydrate lectures. In this section, you will learn about monosaccharide structure. The building blocks of larger carbohydrate polymers. 1 First, let’s review why learning about carbohydrates is important. Carbohydrates are used by biological systems as fuels and energy resources. Carbohydrates typically provide quick energy and are one of the primary energy storage forms in animals. Carbohydrates also provide the precursors to other major macromolecules within the body, including the deoxyribose and ribose required for nucleic acid biosynthesis. Carbohydrates can also provide structural support and cushioning/shock absorption, as well as cell‐cell communication, identification, and signaling. 2 Carbohydrates, as their name implies, are water hydrates of carbon, and they all have the same basic core formula (CH2O)n and are always found in the ratio of 1 carbon to 2 hydrogens to 1 oxygen (1:2:1) making them easy to identify from their molecular formula. 3 Carbohydrates can be divided into subcategories based on their complexity. The simplest carbohydrates are the monosaccharides which are the simple sugars required for the biosynthesis of all the other carbohydrate types. Disaccharides consist of two monosaccharides that have been joined together by a covalent bond called the glycosidic bond. Oligosaccharides are polymers that consist of a few monosaccharides covalently linked together, and Polysaccharides are large polymers that contain hundreds to thousands of monosaccharide units all joined together by glycosidic bonds. The remainder of this lecture will focus on monosaccharides 4 Monosaccharides all have alcohol functional groups associated with them. In addition they also have one additional functional group, either an aldehyde or a ketone.
    [Show full text]
  • 8| Nucleotides and Nucleic Acids
    8| Nucleotides and Nucleic Acids © 2013 W. H. Freeman and Company CHAPTER 8 Nucleotides and Nucleic Acids Key topics: – Biological function of nucleotides and nucleic acids – Structures of common nucleotides – Structure of double‐stranded DNA – Structures of ribonucleic acids – Denaturation and annealing of DNA – Chemistry of nucleic acids; mutagenesis Functions of Nucleotides and Nucleic Acids • Nucleotide Functions: – Energy for metabolism (ATP) – Enzyme cofactors (NAD+) –Signal transduction (cAMP) • Nucleic Acid Functions: – Storage of genetic info (DNA) – Transmission of genetic info (mRNA) –Processing of genetic information (ribozymes) –Protein synthesis (tRNA and rRNA) Nucleotides and Nucleosides • Nucleotide = – Nitrogeneous base –Pentose – Phosphate • Nucleoside = – Nitrogeneous base –Pentose • Nucleobase = – Nitrogeneous base Phosphate Group •Negatively charged at neutral pH • Typically attached to 5’ position – Nucleic acids are built using 5’‐triphosphates •ATP, GTP, TTP, CTP – Nucleic acids contain one phosphate moiety per nucleotide •May be attached to other positions Other Nucleotides: Monophosphate Group in Different Positions Pentose in Nucleotides • ‐D‐ribofuranose in RNA • ‐2’‐deoxy‐D‐ribofuranose in DNA •Different puckered conformations of the sugar ring are possible Nucleobases •Derivatives of pyrimidine or purine • Nitrogen‐containing heteroaromatic molecules •Planar or almost planar structures •Absorb UV light around 250–270 nm Pyrimidine Bases • Cytosine is found in both DNA and RNA •Thymineis found only in DNA
    [Show full text]
  • Nucleotides and Nucleic Acids
    CHAPTER 8 Nucleotides and Nucleic Acids Functions of Nucleotides and Nucleic Acids • Nucleotide Functions: – Energy for metabolism (ATP) – Enzyme cofactors (NAD+) – Signal transduction (cAMP) • Nucleic Acid Functions: – Storage of genetic info (DNA) – Transmission of genetic info (mRNA) – Processing of genetic information (ribozymes) – Protein synthesis (tRNA and rRNA) Nucleotides and Nucleosides • Nucleotide = – Nitrogeneous base – Pentose – Phosphate • Nucleoside = – Nitrogeneous base – Pentose • Nucleobase = – Nitrogeneous base Phosphate Group • Negatively charged at neutral pH • Typically attached to 5’ position – Nucleic acids are built using 5’- triphosphates • ATP, GTP, TTP, CTP – Nucleic acids contain one phosphate moiety per nucleotide • May be attached to other positions Other Nucleotides: Monophosphate Group in Different Positions Pentose in Nucleotides • -D-ribofuranose in RNA • -2’-deoxy-D-ribofuranose in DNA • Different puckered conformations of the sugar ring are possible Purine Bases • Adenine and guanine are found in both RNA and DNA • Also good H-bond donors and acceptors • Adenine pKa at N1 is 3.8 • Guanine pKa at N7 is 2.4 • Neutral molecules at pH 7 • Derivatives of pyrimidine or purine • Nitrogen-containing heteroaromatic molecules • Planar or almost planar structures • Absorb UV light around 250–270 nm Pyrimidine Bases • Cytosine is found in both DNA and RNA • Thymine is found only in DNA • Uracil is found only in RNA • All are good H-bond donors and acceptors • Cytosine pKa at N3 is 4.5 • Thymine pKa at N3 is 9.5
    [Show full text]
  • Deoxyribose and Deoxysugar Derivatives from Photoprocessed Astrophysical Ice Analogues and Comparison to Meteorites
    ARTICLE https://doi.org/10.1038/s41467-018-07693-x OPEN Deoxyribose and deoxysugar derivatives from photoprocessed astrophysical ice analogues and comparison to meteorites Michel Nuevo 1,2, George Cooper3 & Scott A. Sandford 1 Sugars and their derivatives are essential to all terrestrial life. Their presence in meteorites, together with amino acids, nucleobases, amphiphiles, and other compounds of biological 1234567890():,; importance, may have contributed to the inventory of organics that played a role in the emergence of life on Earth. Sugars, including ribose (the sugar of RNA), and other sugar derivatives have been identified in laboratory experiments simulating photoprocessing of ices under astrophysical conditions. In this work, we report the detection of 2-deoxyribose (the sugar of DNA) and several deoxysugar derivatives in residues produced from the ultraviolet irradiation of ice mixtures consisting of H2O and CH3OH. The detection of deoxysugar derivatives adds to the inventory of compounds of biological interest that can form under astrophysical conditions and puts constraints on their abiotic formation pathway. Finally, we report that some of the deoxysugar derivatives found in our residues are also newly identified in carbonaceous meteorites. 1 NASA Ames Research Center, MS 245-6, Moffett Field, CA 94035, USA. 2 BAER Institute, NASA Research Park, MS 18-4, Moffett Field, CA 94035, USA. 3 NASA Ames Research Center, MS 239-4, Moffett Field, CA 94035, USA. Correspondence and requests for materials should be addressed to M.N. (email: [email protected]) NATURE COMMUNICATIONS | (2018) 9:5276 | https://doi.org/10.1038/s41467-018-07693-x | www.nature.com/naturecommunications 1 ARTICLE NATURE COMMUNICATIONS | https://doi.org/10.1038/s41467-018-07693-x ugars (monosaccharides) and their derivatives are ubiqui- contamination.
    [Show full text]
  • Studies on the Prebiotic Origin of 2-Deoxy-D-Ribose
    Studies on the Prebiotic Origin of 2-Deoxy-D-ribose Andrew Mark Steer Doctor of Philosophy University of York Chemistry August 2017 Abstract DNA is an important biological structure necessary for cell proliferation. The origins of cell- like structures and the building blocks of DNA are therefore also of great concern. As of yet the prebiotic origin of 2-deoxy-D-ribose, the sugar of DNA, has no satisfactory explanation. This research attempts to provide a possible explanation to the chemical origin of 2-deoxy- D-ribose via an aldol reaction between acetaldehyde 1 and D-glyceraldehyde D-2 (Error! Reference source not found.). The sugar mixture is trapped with N,N-diphenylhydrazine 3 for ease of purification and characterisation. The reaction is promoted by amino acids, amino esters and amino nitriles consistently giving selectivities in favour of 2-deoxy-D- ribose. This is the first example of an amino nitrile promoted reaction. Potential prebiotic synthesis of 2-deoxy-D-ribose and subsequent trapping with N,N-diphenyl hydrazine 3. The research is developed further by exploring the formation of 2-deoxy-D-ribose in a “protocell” environment – a primitive cell. Here we suggest that primitive cells may have been simple hydrogel systems. A discussion of the characterisation and catalytic ability of small peptide-based supramolecular structures is included. ii Contents Abstract ............................................................................................................................ ii Contents .........................................................................................................................
    [Show full text]
  • Deoxyribose-5-Phosphate Aldolase As a Synthetic Catalyst'
    J. Am. Chem. SOC.1990, 112, 2013-2014 2013 chemical shift for the iminosilaacyl carbon at 6 299.07.3a3b Ad- Deoxyribose-5-phosphateAldolase as a Synthetic dition of 1 equiv of CN(XyI) to a benzene solution of 4, or reaction Catalyst' of 1 with 2 equiv of CN(Xyl), results in formation of a blue complex 5. The combustion analysis of isolated 5 is consistent Carlos F. Barbas, 111, Yi-Fong Wang, and Chi-Huey Wong* with a 1:2 adduct of 1 with isocyanide, Cp,Sc(CN(Xyl)),Si- (SiMe3)3. However, 'H NMR data for 5 indicate a complex Department of Chemistry structure and the presence of three inequivalent SiMe3 groups in The Research Institute of Scripps Clinic a 1 :1: 1 ratioss Formation of X-ray-quality, blue crystals from La Jolla, California 92037 diethvl ether allowed comdete characterization of this comwund. Received November 29, 1989 Tie crystal structure7'(Figure 1) shows that 5 is the pioduct of an isocyanide-coupling reaction that results in further rear- Enzyme-catalyzed stereocontrolled aldol condensations are rangements. The structure drawn in Scheme I reflects the ob- valuable in organic synthesis, particularly in the synthesis of served structural parameters. The chelate ring of 5 is derived from carbohydrates and related s~bstances?~~We report here an initial the two isoc anide groups and contains a Sc( 1)-N( 1) single bond study on the synthetic utility of a bacterial 2-deoxyribose-5- (2.133 (7) i),a longer (dative) Sc(l)-N(2) bond (2.324 (8) A), phosphate aldolase (DERA, EC 4.1.2.4) overexpressed in Es- and a C=C double bond (C(l)-C(2) = 1.375 (12) A).
    [Show full text]
  • Carbohydrates Hydrates of Carbon: General Formula Cn(H2O)N Plants
    Chapter 25: Carbohydrates hydrates of carbon: general formula Cn(H2O)n Plants: photosynthesis hν 6 CO2 + H2O C6H12O6 + 6 O2 Polymers: large molecules made up of repeating smaller units (monomer) Biopolymers: Monomer units: carbohydrates (chapter 25) monosaccharides peptides and proteins (chapter 26) amino acids nucleic acids (chapter 28) nucleotides 315 25.1 Classification of Carbohydrates: I. Number of carbohydrate units monosaccharides: one carbohydrate unit (simple carbohydrates) disaccharides: two carbohydrate units (complex carbohydrates) trisaccharides: three carbohydrate units polysaccharides: many carbohydrate units CHO H OH HO HO HO H HO HO O HO O glucose H OH HO HO OH HO H OH OH CH2OH HO HO HO O HO O HO HO O HO HO O HO HO HO O O O O O HO HO O HO HO HO O O HO HO HO galactose OH + glucose O glucose = lactose polymer = amylose or cellulose 316 160 II. Position of carbonyl group at C1, carbonyl is an aldehyde: aldose at any other carbon, carbonyl is a ketone: ketose III. Number of carbons three carbons: triose six carbons: hexose four carbons: tetrose seven carbons: heptose five carbons: pentose etc. IV. Cyclic form (chapter 25.5) CHO CHO CHO CHO CH2OH H OH HO H H OH H OH O CH2OH H OH H OH HO H HO H CH2OH H OH H OH H OH CH2OH H OH H OH CH OH 2 CH2OH glyceraldehyde threose ribose glucose fructose (triose) (tetrose) (pentose) (hexose) (hexose) 317 (aldohexose) (ketohexose) 25.2: Depicting carbohydrates stereochemistry: Fischer Projections: representation of a three-dimensional molecule as a flat structure.
    [Show full text]
  • WO 2009/082227 Al
    (12) INTERNATIONAL APPLICATION PUBLISHED UNDER THE PATENT COOPERATION TREATY (PCT) (19) World Intellectual Property Organization International Bureau (43) International Publication Date PCT (10) International Publication Number 2 July 2009 (02.07.2009) WO 2009/082227 Al (51) International Patent Classification: 1, NL-6708 SE Wageningen (NL). GROENENDIJK, A23L 1/0522 (2006.01) A61K 31/7072 (2006.01) Martine [NL/NL]; Mazurkastraat 50, NL-2992 GP A23L 1/0526 (2006.01) A61K 35/60 (2006.01) Barendrecht (NL). KAMPHUIS, Patrick Joseph Gerar- A23L 1/0528 (2006.01) A61K 47/36 (2006.01) dus Hendrikus [NL/NL]; Adriaen van Ostadelaan 118, A23L 1/053 (2006.01) A61K 47/38 (2006.01) NL-3583 AM Utrecht (NL). A23L 1/0532 (2006.01) A23L 1/22 (2006.01) A23L 1/0534 (2006.01) A61P 25/28 (2006.01) (74) Agent: KETELAARS, Maarten; Nederlandsch Oc- A23L 1/30 (2006.01) A61K 9/00 (2006.01) trooibureau, J.W. Frisolaan 13, NL-2517 JS The Hague A61K 31/7052 (2006.01) (NL). (21) International Application Number: (81) Designated States (unless otherwise indicated, for every PCT/NL2008/050843 kind of national protection available): AE, AG, AL, AM, AO, AT,AU, AZ, BA, BB, BG, BH, BR, BW, BY, BZ, CA, CH, CN, CO, CR, CU, CZ, DE, DK, DM, DO, DZ, EC, EE, (22) International Filing Date: EG, ES, FI, GB, GD, GE, GH, GM, GT, HN, HR, HU, ID, 22 December 2008 (22.12.2008) IL, IN, IS, JP, KE, KG, KM, KN, KP, KR, KZ, LA, LC, LK, LR, LS, LT, LU, LY, MA, MD, ME, MG, MK, MN, MW, (25) Filing Language: English MX, MY, MZ, NA, NG, NI, NO, NZ, OM, PG, PH, PL, PT, RO, RS, RU, SC, SD, SE, SG, SK, SL, SM, ST, SV, SY, TJ, (26) Publication Language: English TM, TN, TR, TT, TZ, UA, UG, US, UZ, VC, VN, ZA, ZM, ZW (30) Priority Data: 0712381 1.7 20 December 2007 (20.12.2007) EP (84) Designated States (unless otherwise indicated, for every PCT/NL2008/050124 kind of regional protection available): ARIPO (BW, GH, 4 March 2008 (04.03.2008) NL GM, KE, LS, MW, MZ, NA, SD, SL, SZ, TZ, UG, ZM, ZW), Eurasian (AM, AZ, BY, KG, KZ, MD, RU, TJ, TM), (71) Applicant (for all designated States except US): N.V.
    [Show full text]